Wall clock time and date at job start Tue Mar 31 2020 06:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47386 * 2 1 4 4 C 1.46500 * 120.00026 * 270.00162 * 3 2 1 5 5 C 1.50696 * 109.47024 * 269.99928 * 4 3 2 6 6 H 1.08001 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99870 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99589 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99919 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47475 * 90.00306 * 9 7 5 11 11 H 1.48499 * 109.47009 * 210.00269 * 9 7 5 12 12 H 1.48504 * 109.47143 * 329.99940 * 9 7 5 13 13 C 1.34771 * 120.00183 * 89.99410 * 3 2 1 14 14 O 1.21285 * 120.00174 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00063 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47309 * 179.97438 * 15 13 3 17 17 C 1.46904 * 111.00127 * 169.99899 * 16 15 13 18 18 C 1.50704 * 109.46887 * 288.34097 * 17 16 15 19 19 O 1.20823 * 119.99961 * 354.33474 * 18 17 16 20 20 O 1.34227 * 119.99670 * 174.33309 * 18 17 16 21 21 C 1.46894 * 111.00275 * 293.95472 * 16 15 13 22 22 C 1.52998 * 117.50053 * 242.68897 * 21 16 15 23 23 C 1.53007 * 60.00232 * 252.50974 * 22 21 16 24 24 H 1.08995 * 109.47398 * 60.00482 * 1 2 3 25 25 H 1.09007 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46924 * 299.99522 * 1 2 3 27 27 H 1.08999 * 109.47179 * 239.99551 * 2 1 3 28 28 H 1.09005 * 109.46960 * 119.99876 * 2 1 3 29 29 H 1.09005 * 109.47213 * 29.99908 * 4 3 2 30 30 H 1.09001 * 109.47560 * 149.99238 * 4 3 2 31 31 H 0.97007 * 119.99284 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47271 * 59.99688 * 15 13 3 33 33 H 1.08993 * 109.46906 * 299.99620 * 15 13 3 34 34 H 1.08996 * 109.47204 * 168.33945 * 17 16 15 35 35 H 1.09001 * 109.46818 * 48.33579 * 17 16 15 36 36 H 0.96702 * 117.00351 * 179.97438 * 20 18 17 37 37 H 1.09004 * 115.55040 * 28.39869 * 21 16 15 38 38 H 1.08997 * 117.49643 * 359.97438 * 22 21 16 39 39 H 1.08995 * 117.50161 * 145.02298 * 22 21 16 40 40 H 1.08999 * 117.49705 * 252.51139 * 23 22 21 41 41 H 1.08994 * 117.52096 * 107.47663 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1841 -3.2569 9 14 3.0131 3.4360 -3.9287 10 1 3.1157 4.8561 -3.5069 11 1 3.4067 3.3137 -5.3553 12 1 1.6135 2.9692 -3.7596 13 6 2.2429 2.0165 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2059 3.5888 17 6 1.8585 1.6399 4.8668 18 6 0.3542 1.6975 4.9373 19 8 -0.2706 2.2537 4.0654 20 8 -0.2915 1.1308 5.9686 21 6 3.7475 2.5096 3.6267 22 6 4.5319 2.0619 4.8617 23 6 4.2239 3.5453 4.6473 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 5.7179 2.5752 -4.0825 32 1 2.6226 0.4187 2.5300 33 1 0.9443 1.0116 2.5302 34 1 2.2831 2.2151 5.6895 35 1 2.1862 0.6030 4.9411 36 1 -1.2565 1.1938 5.9705 37 1 4.2603 2.4775 2.6654 38 1 3.9817 1.5423 5.6462 39 1 5.5609 1.7350 4.7131 40 1 5.0505 4.1941 4.3576 41 1 3.4713 4.0014 5.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829692504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:21 Heat of formation + Delta-G solvation = -72.979081 kcal Electronic energy + Delta-G solvation = -23492.432258 eV Core-core repulsion = 19988.455865 eV Total energy + Delta-G solvation = -3503.976393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.61632 -39.37060 -38.08434 -36.22668 -35.28565 -33.83563 -32.66258 -30.36075 -29.50259 -27.74809 -25.58453 -22.94002 -22.57475 -22.17382 -22.06515 -19.92464 -18.46597 -18.22491 -17.11968 -16.92280 -16.71778 -16.17609 -15.68061 -15.22964 -15.11164 -14.45596 -13.98918 -13.81505 -13.43884 -13.41028 -13.02583 -12.65318 -12.51475 -12.38033 -12.13990 -12.02191 -11.69978 -11.52676 -11.49018 -11.30441 -10.98232 -10.92584 -10.65795 -10.46302 -10.41400 -10.28856 -10.11023 -9.51438 -8.93498 -8.56236 -8.16455 -7.65402 -6.06822 -4.04967 2.08255 2.63742 3.31838 3.37651 3.40569 3.42818 3.48150 3.89878 4.11827 4.42516 4.69983 4.78735 4.92696 4.98097 5.02127 5.13337 5.19680 5.26702 5.30359 5.41530 5.47782 5.60404 5.61653 5.77534 5.92420 5.97172 6.02480 6.14389 6.18158 6.32785 6.44489 6.69811 6.83482 6.91115 7.03157 7.41628 7.64634 7.78190 8.31822 8.49895 8.95301 9.07556 9.54416 11.06545 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.005007 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.922274 B = 5591.039373 C = 6433.868689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.266 1.266 13 C 0.513 3.487 14 O -0.518 6.518 15 C 0.037 3.963 16 N -0.477 5.477 17 C 0.059 3.941 18 C 0.471 3.529 19 O -0.487 6.487 20 O -0.523 6.523 21 C 0.041 3.959 22 C -0.229 4.229 23 C -0.167 4.167 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.410 0.590 37 H 0.135 0.865 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.870 -6.177 17.873 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.017 4.017 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.299 3.701 14 O -0.394 6.394 15 C -0.094 4.094 16 N -0.199 5.199 17 C -0.070 4.070 18 C 0.311 3.689 19 O -0.372 6.372 20 O -0.335 6.335 21 C -0.067 4.067 22 C -0.268 4.268 23 C -0.204 4.204 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.269 0.731 37 H 0.153 0.847 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.547 -4.939 17.355 19.966 hybrid contribution -0.735 -0.209 -0.516 0.922 sum -9.283 -5.149 16.839 19.906 Atomic orbital electron populations 1.22246 0.96795 1.01451 1.02451 1.21426 0.93425 0.83996 1.02884 1.47910 1.64665 1.13310 1.06930 1.19626 0.97175 0.93459 0.80033 1.21328 0.95340 1.32755 1.07060 0.90847 1.24845 0.94974 0.95794 0.97355 1.69900 1.15135 1.45098 1.23620 0.86855 0.81525 0.81677 0.79679 1.19890 1.21138 1.19070 1.19935 0.78660 0.87054 0.84476 1.90684 1.44488 1.17484 1.86707 1.22165 1.02686 0.93971 0.90578 1.61010 1.15153 1.43577 1.00204 1.21661 0.88163 1.01646 0.95530 1.23412 0.91744 0.75009 0.78719 1.90784 1.68600 1.39341 1.38438 1.84499 1.27478 1.73511 1.48052 1.22692 0.85415 1.03038 0.95585 1.23701 1.02394 0.98766 1.01927 1.23018 1.03120 0.91690 1.02610 0.92134 0.92090 0.92880 0.89684 0.91764 0.95342 0.94556 0.92618 0.91895 0.88064 0.86020 0.90128 0.73111 0.84701 0.88622 0.88439 0.88123 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.70 5.93 -4.04 -0.02 1.67 16 3 N -0.60 -12.45 2.46 -175.06 -0.43 -12.88 16 4 C 0.22 5.42 4.23 -5.20 -0.02 5.39 16 5 C -0.53 -15.13 9.94 -34.44 -0.34 -15.48 16 6 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 9 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 10 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.51 10.75 7.18 -10.99 -0.08 10.67 16 14 O -0.52 -13.01 14.42 5.55 0.08 -12.93 16 15 C 0.04 0.57 3.64 -4.98 -0.02 0.55 16 16 N -0.48 -7.08 4.05 -229.52 -0.93 -8.01 16 17 C 0.06 0.62 4.21 -4.97 -0.02 0.60 16 18 C 0.47 5.36 7.84 36.01 0.28 5.64 16 19 O -0.49 -7.57 15.93 -18.75 -0.30 -7.87 16 20 O -0.52 -4.15 13.42 -39.25 -0.53 -4.68 16 21 C 0.04 0.61 5.21 -67.71 -0.35 0.25 16 22 C -0.23 -2.45 9.53 -26.73 -0.25 -2.70 16 23 C -0.17 -2.06 9.96 -26.72 -0.27 -2.32 16 24 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.05 0.72 7.22 -51.93 -0.38 0.35 16 27 H 0.08 1.39 8.07 -51.93 -0.42 0.98 16 28 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 29 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.04 0.98 6.85 -51.93 -0.36 0.62 16 31 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 32 H 0.06 0.85 7.38 -51.93 -0.38 0.46 16 33 H 0.10 1.49 5.56 -51.93 -0.29 1.20 16 34 H 0.12 1.08 5.84 -51.93 -0.30 0.78 16 35 H 0.08 0.67 7.88 -51.93 -0.41 0.27 16 36 H 0.41 1.66 9.10 45.56 0.41 2.07 16 37 H 0.14 2.45 6.70 -51.93 -0.35 2.10 16 38 H 0.10 0.82 5.93 -51.93 -0.31 0.51 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -36.71 336.55 -6.90 -43.61 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.16 Total: 3.07 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.81 Total: 4.38 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.59 Total: -47.89 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.75 Total: -25.47 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.71 -6.90 -43.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.369 kcal (2) G-P(sol) polarization free energy of solvation -36.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds