Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47386 * 2 1 4 4 C 1.46500 * 120.00026 * 270.00162 * 3 2 1 5 5 C 1.50696 * 109.47024 * 269.99928 * 4 3 2 6 6 H 1.08001 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99870 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99589 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99919 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47475 * 90.00306 * 9 7 5 11 11 H 1.48499 * 109.47009 * 210.00269 * 9 7 5 12 12 H 1.48504 * 109.47143 * 329.99940 * 9 7 5 13 13 C 1.34771 * 120.00183 * 89.99410 * 3 2 1 14 14 O 1.21285 * 120.00174 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00063 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47309 * 179.97438 * 15 13 3 17 17 C 1.46904 * 111.00127 * 169.99899 * 16 15 13 18 18 C 1.50704 * 109.46887 * 288.34097 * 17 16 15 19 19 O 1.20823 * 119.99961 * 354.33474 * 18 17 16 20 20 O 1.34227 * 119.99670 * 174.33309 * 18 17 16 21 21 C 1.46894 * 111.00275 * 293.95472 * 16 15 13 22 22 C 1.52998 * 117.50053 * 242.68897 * 21 16 15 23 23 C 1.53007 * 60.00232 * 252.50974 * 22 21 16 24 24 H 1.08995 * 109.47398 * 60.00482 * 1 2 3 25 25 H 1.09007 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46924 * 299.99522 * 1 2 3 27 27 H 1.08999 * 109.47179 * 239.99551 * 2 1 3 28 28 H 1.09005 * 109.46960 * 119.99876 * 2 1 3 29 29 H 1.09005 * 109.47213 * 29.99908 * 4 3 2 30 30 H 1.09001 * 109.47560 * 149.99238 * 4 3 2 31 31 H 0.97007 * 119.99284 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47271 * 59.99688 * 15 13 3 33 33 H 1.08993 * 109.46906 * 299.99620 * 15 13 3 34 34 H 1.08996 * 109.47204 * 168.33945 * 17 16 15 35 35 H 1.09001 * 109.46818 * 48.33579 * 17 16 15 36 36 H 0.96702 * 117.00351 * 179.97438 * 20 18 17 37 37 H 1.09004 * 115.55040 * 28.39869 * 21 16 15 38 38 H 1.08997 * 117.49643 * 359.97438 * 22 21 16 39 39 H 1.08995 * 117.50161 * 145.02298 * 22 21 16 40 40 H 1.08999 * 117.49705 * 252.51139 * 23 22 21 41 41 H 1.08994 * 117.52096 * 107.47663 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1841 -3.2569 9 14 3.0131 3.4360 -3.9287 10 1 3.1157 4.8561 -3.5069 11 1 3.4067 3.3137 -5.3553 12 1 1.6135 2.9692 -3.7596 13 6 2.2429 2.0165 1.1671 14 8 2.6477 3.1599 1.1671 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2059 3.5888 17 6 1.8585 1.6399 4.8668 18 6 0.3542 1.6975 4.9373 19 8 -0.2706 2.2537 4.0654 20 8 -0.2915 1.1308 5.9686 21 6 3.7475 2.5096 3.6267 22 6 4.5319 2.0619 4.8617 23 6 4.2239 3.5453 4.6473 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1385 31 1 5.7179 2.5752 -4.0825 32 1 2.6226 0.4187 2.5300 33 1 0.9443 1.0116 2.5302 34 1 2.2831 2.2151 5.6895 35 1 2.1862 0.6030 4.9411 36 1 -1.2565 1.1938 5.9705 37 1 4.2603 2.4775 2.6654 38 1 3.9817 1.5423 5.6462 39 1 5.5609 1.7350 4.7131 40 1 5.0505 4.1941 4.3576 41 1 3.4713 4.0014 5.2903 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829692504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -101.493691 kcal Electronic energy + Delta-G solvation = -23493.668745 eV Core-core repulsion = 19988.455865 eV Total energy + Delta-G solvation = -3505.212879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.59134 -40.69225 -39.25005 -37.02591 -36.92588 -35.05415 -34.66853 -31.96715 -30.67545 -29.34594 -26.92371 -24.44685 -23.89120 -23.44278 -22.99054 -21.01690 -19.83722 -19.13416 -19.10793 -18.16446 -18.04638 -17.34506 -16.82397 -16.69392 -16.19873 -16.06796 -15.53672 -15.05185 -14.74290 -14.63574 -14.46631 -14.07470 -13.81377 -13.72203 -13.42959 -13.27055 -13.21328 -12.89924 -12.56902 -12.43668 -12.37808 -12.34191 -12.09603 -12.00552 -11.79058 -11.74465 -11.39815 -11.28648 -10.83778 -10.58295 -9.39421 -9.17689 -8.34993 -6.38969 1.25786 1.30647 1.34988 1.43090 1.82965 1.84155 2.23726 2.29831 2.76378 2.99494 3.05352 3.55752 3.89978 3.94768 4.04161 4.07119 4.11094 4.24802 4.28430 4.37361 4.41594 4.44661 4.61205 4.75851 4.77019 4.85397 4.92090 4.96579 4.98326 5.03773 5.24059 5.34987 5.46112 5.64722 5.67482 5.80569 5.88649 6.24767 6.61378 6.73312 7.07978 7.22018 7.47396 8.81786 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.019070 B = 0.005007 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.922274 B = 5591.039373 C = 6433.868689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.943 5.943 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.242 1.242 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.053 3.947 16 N -0.500 5.500 17 C 0.056 3.944 18 C 0.481 3.519 19 O -0.537 6.537 20 O -0.508 6.508 21 C 0.010 3.990 22 C -0.189 4.189 23 C -0.171 4.171 24 H 0.045 0.955 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.013 0.987 31 H 0.268 0.732 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.429 0.571 37 H 0.086 0.914 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.793 -7.708 19.892 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.767 3.233 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.165 1.165 13 C 0.289 3.711 14 O -0.452 6.452 15 C -0.077 4.077 16 N -0.224 5.224 17 C -0.072 4.072 18 C 0.323 3.677 19 O -0.426 6.426 20 O -0.322 6.322 21 C -0.099 4.099 22 C -0.228 4.228 23 C -0.208 4.208 24 H 0.065 0.935 25 H 0.116 0.884 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.132 0.868 36 H 0.290 0.710 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.506 -6.539 19.423 23.030 hybrid contribution -0.076 0.213 -1.037 1.062 sum -10.582 -6.326 18.385 22.136 Atomic orbital electron populations 1.22156 0.94412 1.03579 1.01705 1.21759 0.95301 0.81243 1.04015 1.48051 1.64661 1.15188 1.05740 1.19250 0.94939 0.92775 0.82538 1.21522 0.96850 1.31970 1.06626 0.95036 1.25774 0.96617 0.97097 0.98884 1.70039 1.17228 1.46573 1.24529 0.85775 0.80475 0.79061 0.78011 1.20429 1.19724 1.16549 1.20999 0.77189 0.86761 0.86164 1.90641 1.46780 1.20088 1.87676 1.22008 1.03762 0.93952 0.87974 1.60877 1.15234 1.44520 1.01731 1.21846 0.87849 1.03668 0.93824 1.23507 0.92014 0.73851 0.78319 1.90783 1.69616 1.41743 1.40459 1.84452 1.29162 1.72313 1.46285 1.22394 0.85937 1.06593 0.94927 1.23767 1.02213 0.97163 0.99644 1.23085 1.03084 0.92808 1.01868 0.93539 0.88441 0.92949 0.90529 0.88718 0.93656 0.96940 0.92272 0.89514 0.86731 0.83891 0.86826 0.70956 0.89572 0.85236 0.88019 0.88973 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 10.24 71.98 0.74 -3.20 16 2 C 0.10 3.02 5.93 86.38 0.51 3.53 16 3 N -0.60 -25.69 2.46 -826.16 -2.03 -27.71 16 4 C 0.23 11.59 4.23 85.63 0.36 11.95 16 5 C -0.53 -31.84 9.94 25.60 0.25 -31.59 16 6 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 7 C 0.01 0.87 5.47 84.66 0.46 1.33 16 8 N -0.94 -60.23 13.96 21.45 0.30 -59.93 16 9 Si 0.94 45.84 27.47 68.60 1.88 47.73 16 10 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.24 -10.73 6.54 99.48 0.65 -10.08 16 13 C 0.50 21.55 7.18 87.66 0.63 22.18 16 14 O -0.57 -30.40 14.42 -3.04 -0.04 -30.45 16 15 C 0.05 1.61 3.64 85.56 0.31 1.92 16 16 N -0.50 -14.32 4.05 -880.06 -3.56 -17.88 16 17 C 0.06 0.99 4.21 85.56 0.36 1.35 16 18 C 0.48 9.55 7.84 71.24 0.56 10.11 16 19 O -0.54 -15.92 15.93 21.97 0.35 -15.57 16 20 O -0.51 -6.16 13.42 -51.38 -0.69 -6.84 16 21 C 0.01 0.30 5.21 44.92 0.23 0.53 16 22 C -0.19 -3.57 9.53 30.60 0.29 -3.28 16 23 C -0.17 -4.09 9.96 30.60 0.30 -3.78 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.05 1.31 7.22 -2.39 -0.02 1.29 16 27 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 28 H 0.09 2.29 6.44 -2.38 -0.02 2.27 16 29 H 0.05 2.14 7.13 -2.38 -0.02 2.13 16 30 H 0.01 0.70 6.85 -2.39 -0.02 0.68 16 31 H 0.27 15.92 8.31 -92.70 -0.77 15.15 16 32 H 0.09 2.15 7.38 -2.39 -0.02 2.14 16 33 H 0.11 3.15 5.56 -2.39 -0.01 3.14 16 34 H 0.14 1.93 5.84 -2.39 -0.01 1.92 16 35 H 0.11 1.31 7.88 -2.39 -0.02 1.29 16 36 H 0.43 2.00 9.10 -74.06 -0.67 1.33 16 37 H 0.09 3.37 6.70 -2.39 -0.02 3.36 16 38 H 0.13 1.57 5.93 -2.39 -0.01 1.55 16 39 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.11 2.26 7.69 -2.39 -0.02 2.24 16 Total: -1.00 -86.06 336.55 1.55 -84.51 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.32 Total: 15.10 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.02 Total: 11.05 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -5.29 Total: -105.53 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: -0.38 Total: -52.86 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.73 kcal Total: -86.06 1.55 -84.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829692504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.984 kcal (2) G-P(sol) polarization free energy of solvation -86.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds