Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00369 * 2 1 4 4 H 1.48505 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47200 * 300.00168 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99988 * 3 2 1 7 7 C 1.37881 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00199 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.27607 * 302.09330 * 9 7 2 11 11 C 1.54600 * 110.30704 * 64.28251 * 9 7 2 12 12 C 1.54939 * 102.92251 * 140.87339 * 11 9 7 13 13 N 1.48540 * 103.22505 * 322.59005 * 12 11 9 14 14 C 1.46901 * 110.99748 * 159.72034 * 13 12 11 15 15 C 1.52996 * 109.47379 * 52.60001 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 14 18 18 C 1.47091 * 125.55874 * 89.99673 * 17 16 15 19 19 C 1.54090 * 103.77508 * 179.97438 * 18 17 16 20 20 O 1.45694 * 104.00986 * 0.02562 * 19 18 17 21 21 C 1.33773 * 109.47715 * 359.74910 * 20 19 18 22 22 O 1.21513 * 123.07403 * 180.24346 * 21 20 19 23 23 C 1.47902 * 105.81995 * 39.20642 * 13 12 11 24 24 H 0.97004 * 119.99123 * 0.02562 * 1 2 3 25 25 H 0.96698 * 114.00497 * 57.91000 * 10 9 7 26 26 H 1.08996 * 110.72743 * 259.23353 * 11 9 7 27 27 H 1.08999 * 110.72383 * 22.34204 * 11 9 7 28 28 H 1.08996 * 110.67185 * 204.15278 * 12 11 9 29 29 H 1.09001 * 110.66388 * 81.01885 * 12 11 9 30 30 H 1.09001 * 109.46874 * 292.60148 * 14 13 12 31 31 H 1.09004 * 109.46970 * 172.60281 * 14 13 12 32 32 H 1.09001 * 109.46997 * 60.00222 * 15 14 13 33 33 H 1.08996 * 109.47452 * 299.99795 * 15 14 13 34 34 H 1.09001 * 109.47289 * 60.00050 * 16 15 14 35 35 H 1.09004 * 109.47261 * 300.00306 * 16 15 14 36 36 H 1.09001 * 110.56963 * 298.55595 * 18 17 16 37 37 H 1.09008 * 110.56269 * 61.41274 * 18 17 16 38 38 H 1.09005 * 110.51913 * 118.63510 * 19 18 17 39 39 H 1.08999 * 110.52098 * 241.23155 * 19 18 17 40 40 H 1.09000 * 109.91746 * 94.02093 * 23 13 12 41 41 H 1.09002 * 109.91349 * 215.31921 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.3870 -2.5711 1.1377 11 6 0.4373 -2.6501 -1.3042 12 6 0.6019 -4.1529 -1.6432 13 7 2.0053 -4.4385 -1.2493 14 6 2.2113 -5.8781 -1.0415 15 6 1.7288 -6.6454 -2.2741 16 6 1.9439 -8.1447 -2.0579 17 7 1.4825 -8.8795 -3.2384 18 6 2.3052 -9.2212 -4.4088 19 6 1.3329 -9.9812 -5.3315 20 8 0.0774 -9.9874 -4.5924 21 6 0.2435 -9.3544 -3.4257 22 8 -0.6485 -9.2193 -2.6116 23 6 2.2343 -3.6842 0.0021 24 1 -0.4849 0.8402 -0.0004 25 1 -0.2547 -1.8497 1.1902 26 1 -0.6114 -2.4053 -1.1358 27 1 0.8557 -2.0258 -2.0937 28 1 0.4592 -4.3246 -2.7101 29 1 -0.0921 -4.7573 -1.0591 30 1 1.6472 -6.2033 -0.1673 31 1 3.2718 -6.0743 -0.8834 32 1 2.2928 -6.3202 -3.1483 33 1 0.6684 -6.4493 -2.4322 34 1 1.3802 -8.4703 -1.1836 35 1 3.0045 -8.3406 -1.9000 36 1 2.6698 -8.3177 -4.8976 37 1 3.1372 -9.8627 -4.1179 38 1 1.2155 -9.4553 -6.2791 39 1 1.6841 -10.9989 -5.5015 40 1 2.0427 -4.3254 0.8625 41 1 3.2597 -3.3157 0.0312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829975616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -112.383791 kcal Electronic energy + Delta-G solvation = -22842.982462 eV Core-core repulsion = 19337.297353 eV Total energy + Delta-G solvation = -3505.685110 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.72697 -38.54183 -37.35987 -36.36543 -34.95026 -32.44267 -32.04250 -30.13595 -28.84953 -27.97907 -25.68791 -24.10832 -23.79135 -22.25309 -20.99173 -19.89192 -19.29846 -17.62084 -17.41124 -17.08159 -17.02625 -15.57329 -15.26213 -14.91816 -14.70456 -14.38602 -14.35283 -14.11645 -13.91822 -13.68756 -13.19034 -12.75614 -12.60829 -12.14124 -11.99663 -11.80373 -11.72349 -11.26100 -11.00205 -10.96736 -10.84029 -10.75570 -10.58200 -10.49301 -10.40714 -10.25120 -9.90556 -9.21453 -9.09301 -8.56397 -8.06456 -7.77518 -6.17290 -4.23419 2.20456 2.56771 3.20564 3.24216 3.32655 3.37182 3.80631 4.26988 4.33964 4.37204 4.53101 4.82592 4.88542 5.04968 5.08975 5.14032 5.23263 5.28500 5.42390 5.64065 5.75552 5.82481 5.99506 6.10061 6.15405 6.22538 6.29640 6.35105 6.47455 6.53582 6.95985 7.09530 7.12442 7.31314 7.55467 7.67718 7.73732 7.84785 7.88128 8.19137 8.78384 9.43797 9.56590 10.90394 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036139 B = 0.003119 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.610291 B = 8974.676666 C = 9084.639084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.066 3.934 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.242 3.758 10 O -0.595 6.595 11 C -0.119 4.119 12 C 0.032 3.968 13 N -0.514 5.514 14 C 0.050 3.950 15 C -0.137 4.137 16 C 0.148 3.852 17 N -0.629 5.629 18 C 0.064 3.936 19 C 0.041 3.959 20 O -0.331 6.331 21 C 0.640 3.360 22 O -0.518 6.518 23 C 0.054 3.946 24 H 0.266 0.734 25 H 0.384 0.616 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -17.514 -10.060 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.081 0.919 9 C 0.202 3.798 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.096 4.096 13 N -0.239 5.239 14 C -0.079 4.079 15 C -0.176 4.176 16 C 0.027 3.973 17 N -0.377 5.377 18 C -0.060 4.060 19 C -0.034 4.034 20 O -0.241 6.241 21 C 0.394 3.606 22 O -0.402 6.402 23 C -0.073 4.073 24 H 0.076 0.924 25 H 0.235 0.765 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.055 0.945 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.244 -17.816 -9.995 21.361 hybrid contribution -0.238 1.214 0.310 1.275 sum 6.007 -16.602 -9.685 20.137 Atomic orbital electron populations 1.69639 1.05949 1.27267 1.51150 1.25031 0.95006 0.99488 0.93961 0.86401 0.80133 0.83053 0.77576 1.19675 1.20932 1.20942 1.21744 0.93549 0.90624 1.50623 0.91935 1.19359 0.86263 0.91573 0.82580 1.86082 1.52026 1.53971 1.48435 1.22980 1.00788 0.91565 1.00418 1.23285 0.88480 0.98862 0.98967 1.64857 1.23448 1.05220 1.30325 1.22160 1.00599 0.89528 0.95657 1.22047 1.02892 0.93064 0.99586 1.21377 1.00171 0.90880 0.84886 1.48113 1.10475 1.58375 1.20752 1.22819 0.95175 1.01246 0.86718 1.24277 0.80547 1.02925 0.95671 1.87286 1.34711 1.71961 1.30172 1.18529 0.83448 0.77242 0.81387 1.91074 1.44120 1.61588 1.43461 1.22876 1.00496 0.95131 0.88839 0.92414 0.76490 0.91779 0.91476 0.91870 0.94745 0.94808 0.91055 0.90885 0.91074 0.89377 0.89585 0.88793 0.89020 0.87611 0.87708 0.94544 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 10.88 55.43 0.60 -23.80 16 2 C 0.07 1.78 5.26 -17.82 -0.09 1.69 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.33 8.10 -34.44 -0.28 -14.61 16 8 H 0.06 1.69 7.34 -52.49 -0.39 1.31 16 9 C 0.24 6.15 0.99 -90.42 -0.09 6.06 16 10 O -0.60 -15.95 12.93 -35.23 -0.46 -16.41 16 11 C -0.12 -2.83 5.50 -24.87 -0.14 -2.97 16 12 C 0.03 0.64 5.10 -1.89 -0.01 0.63 16 13 N -0.51 -9.91 5.40 -230.45 -1.24 -11.15 16 14 C 0.05 0.75 5.03 -3.83 -0.02 0.73 16 15 C -0.14 -1.75 5.20 -26.73 -0.14 -1.89 16 16 C 0.15 1.51 6.02 -4.04 -0.02 1.49 16 17 N -0.63 -6.42 2.96 -178.84 -0.53 -6.95 16 18 C 0.06 0.35 7.70 -3.15 -0.02 0.32 16 19 C 0.04 0.21 8.23 37.73 0.31 0.52 16 20 O -0.33 -3.76 11.09 -37.84 -0.42 -4.18 16 21 C 0.64 8.77 8.85 53.71 0.48 9.25 16 22 O -0.52 -9.47 17.54 -19.12 -0.34 -9.81 16 23 C 0.05 1.19 6.17 -2.76 -0.02 1.18 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.38 10.45 7.05 45.56 0.32 10.77 16 26 H 0.06 1.59 8.06 -51.93 -0.42 1.18 16 27 H 0.07 1.68 7.85 -51.93 -0.41 1.27 16 28 H 0.06 1.17 7.66 -51.93 -0.40 0.77 16 29 H 0.03 0.71 8.00 -51.93 -0.42 0.29 16 30 H 0.03 0.53 7.81 -51.93 -0.41 0.13 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.09 6.79 -51.93 -0.35 0.73 16 34 H 0.09 1.01 7.92 -51.93 -0.41 0.60 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.04 0.80 7.39 -51.93 -0.38 0.41 16 41 H 0.08 1.72 7.39 -51.93 -0.38 1.34 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -32.82 332.37 -8.17 -40.99 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.73 Total: 8.03 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.05 Total: 2.40 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -1.17 Total: -41.91 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.21 Total: -30.40 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.82 -8.17 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.391 kcal (2) G-P(sol) polarization free energy of solvation -32.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds