Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00369 * 2 1 4 4 H 1.48505 * 109.46906 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47200 * 300.00168 * 3 2 1 6 6 H 1.48503 * 109.47081 * 59.99988 * 3 2 1 7 7 C 1.37881 * 119.99626 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00108 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00199 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.27607 * 302.09330 * 9 7 2 11 11 C 1.54600 * 110.30704 * 64.28251 * 9 7 2 12 12 C 1.54939 * 102.92251 * 140.87339 * 11 9 7 13 13 N 1.48540 * 103.22505 * 322.59005 * 12 11 9 14 14 C 1.46901 * 110.99748 * 159.72034 * 13 12 11 15 15 C 1.52996 * 109.47379 * 52.60001 * 14 13 12 16 16 C 1.52997 * 109.47131 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47289 * 180.02562 * 16 15 14 18 18 C 1.47091 * 125.55874 * 89.99673 * 17 16 15 19 19 C 1.54090 * 103.77508 * 179.97438 * 18 17 16 20 20 O 1.45694 * 104.00986 * 0.02562 * 19 18 17 21 21 C 1.33773 * 109.47715 * 359.74910 * 20 19 18 22 22 O 1.21513 * 123.07403 * 180.24346 * 21 20 19 23 23 C 1.47902 * 105.81995 * 39.20642 * 13 12 11 24 24 H 0.97004 * 119.99123 * 0.02562 * 1 2 3 25 25 H 0.96698 * 114.00497 * 57.91000 * 10 9 7 26 26 H 1.08996 * 110.72743 * 259.23353 * 11 9 7 27 27 H 1.08999 * 110.72383 * 22.34204 * 11 9 7 28 28 H 1.08996 * 110.67185 * 204.15278 * 12 11 9 29 29 H 1.09001 * 110.66388 * 81.01885 * 12 11 9 30 30 H 1.09001 * 109.46874 * 292.60148 * 14 13 12 31 31 H 1.09004 * 109.46970 * 172.60281 * 14 13 12 32 32 H 1.09001 * 109.46997 * 60.00222 * 15 14 13 33 33 H 1.08996 * 109.47452 * 299.99795 * 15 14 13 34 34 H 1.09001 * 109.47289 * 60.00050 * 16 15 14 35 35 H 1.09004 * 109.47261 * 300.00306 * 16 15 14 36 36 H 1.09001 * 110.56963 * 298.55595 * 18 17 16 37 37 H 1.09008 * 110.56269 * 61.41274 * 18 17 16 38 38 H 1.09005 * 110.51913 * 118.63510 * 19 18 17 39 39 H 1.08999 * 110.52098 * 241.23155 * 19 18 17 40 40 H 1.09000 * 109.91746 * 94.02093 * 23 13 12 41 41 H 1.09002 * 109.91349 * 215.31921 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3462 0.0006 5 1 1.8906 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0017 10 8 0.3870 -2.5711 1.1377 11 6 0.4373 -2.6501 -1.3042 12 6 0.6019 -4.1529 -1.6432 13 7 2.0053 -4.4385 -1.2493 14 6 2.2113 -5.8781 -1.0415 15 6 1.7288 -6.6454 -2.2741 16 6 1.9439 -8.1447 -2.0579 17 7 1.4825 -8.8795 -3.2384 18 6 2.3052 -9.2212 -4.4088 19 6 1.3329 -9.9812 -5.3315 20 8 0.0774 -9.9874 -4.5924 21 6 0.2435 -9.3544 -3.4257 22 8 -0.6485 -9.2193 -2.6116 23 6 2.2343 -3.6842 0.0021 24 1 -0.4849 0.8402 -0.0004 25 1 -0.2547 -1.8497 1.1902 26 1 -0.6114 -2.4053 -1.1358 27 1 0.8557 -2.0258 -2.0937 28 1 0.4592 -4.3246 -2.7101 29 1 -0.0921 -4.7573 -1.0591 30 1 1.6472 -6.2033 -0.1673 31 1 3.2718 -6.0743 -0.8834 32 1 2.2928 -6.3202 -3.1483 33 1 0.6684 -6.4493 -2.4322 34 1 1.3802 -8.4703 -1.1836 35 1 3.0045 -8.3406 -1.9000 36 1 2.6698 -8.3177 -4.8976 37 1 3.1372 -9.8627 -4.1179 38 1 1.2155 -9.4553 -6.2791 39 1 1.6841 -10.9989 -5.5015 40 1 2.0427 -4.3254 0.8625 41 1 3.2597 -3.3157 0.0312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829975616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -138.406303 kcal Electronic energy + Delta-G solvation = -22844.110883 eV Core-core repulsion = 19337.297353 eV Total energy + Delta-G solvation = -3506.813530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.51894 -40.22619 -38.37435 -37.53122 -36.45764 -34.13351 -33.67766 -31.16692 -30.13639 -29.70783 -27.14185 -25.61008 -24.48254 -23.58779 -21.96560 -21.39040 -21.13794 -19.12456 -18.42385 -18.16818 -17.80863 -16.96890 -16.85852 -16.61258 -16.05948 -15.77460 -15.52138 -15.06432 -14.99279 -14.82728 -14.40618 -14.09054 -13.99023 -13.55001 -13.32368 -13.21322 -13.01923 -12.89374 -12.75288 -12.53179 -12.28185 -12.11867 -12.06539 -11.97354 -11.81496 -11.67295 -11.56224 -11.09149 -10.61590 -10.11398 -9.93484 -9.36294 -8.21297 -6.35523 1.40465 1.42901 1.43328 1.54630 1.60332 2.39787 2.61675 2.98163 3.13405 3.39447 3.68420 3.84399 3.97927 4.02722 4.13572 4.18823 4.31405 4.33349 4.46261 4.49750 4.55004 4.57584 4.67578 4.72216 4.80672 4.81452 4.82948 5.06680 5.15274 5.17344 5.23590 5.40066 5.42106 5.58427 5.76785 5.94230 6.14458 6.23043 6.33227 6.69755 6.90768 7.34502 7.43419 8.85063 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036139 B = 0.003119 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.610291 B = 8974.676666 C = 9084.639084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.223 3.777 10 O -0.604 6.604 11 C -0.112 4.112 12 C 0.045 3.955 13 N -0.513 5.513 14 C 0.049 3.951 15 C -0.125 4.125 16 C 0.151 3.849 17 N -0.624 5.624 18 C 0.061 3.939 19 C 0.034 3.966 20 O -0.352 6.352 21 C 0.633 3.367 22 O -0.582 6.582 23 C 0.061 3.939 24 H 0.268 0.732 25 H 0.377 0.623 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.026 0.974 30 H 0.024 0.976 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.034 0.966 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.919 -18.478 -11.595 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.590 4.590 8 H 0.076 0.924 9 C 0.184 3.816 10 O -0.414 6.414 11 C -0.151 4.151 12 C -0.082 4.082 13 N -0.237 5.237 14 C -0.080 4.080 15 C -0.164 4.164 16 C 0.030 3.970 17 N -0.371 5.371 18 C -0.060 4.060 19 C -0.040 4.040 20 O -0.262 6.262 21 C 0.387 3.613 22 O -0.471 6.471 23 C -0.067 4.067 24 H 0.078 0.922 25 H 0.228 0.772 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.053 0.947 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.871 -18.808 -11.575 23.799 hybrid contribution -1.001 1.477 0.717 1.923 sum 7.870 -17.330 -10.859 21.913 Atomic orbital electron populations 1.69730 1.06989 1.28075 1.51054 1.25770 0.95858 1.02545 0.93469 0.85416 0.78989 0.79047 0.77589 1.19249 1.20443 1.20627 1.21997 0.93547 0.91919 1.51493 0.92380 1.19678 0.86787 0.92628 0.82545 1.86077 1.52144 1.53677 1.49459 1.22780 0.99067 0.93912 0.99353 1.23129 0.89170 0.95949 0.99997 1.64854 1.22281 1.07835 1.28734 1.22302 1.02375 0.86831 0.96465 1.21909 1.00933 0.94638 0.98888 1.21349 1.02160 0.88973 0.84490 1.48195 1.09981 1.57034 1.21883 1.23226 0.95202 1.02739 0.84868 1.24806 0.78171 1.05298 0.95683 1.87239 1.37991 1.71374 1.29617 1.18797 0.83802 0.77225 0.81445 1.91009 1.46286 1.64084 1.45766 1.22725 0.99505 0.94301 0.90120 0.92216 0.77227 0.93821 0.93135 0.89907 0.95519 0.95752 0.88116 0.89544 0.94149 0.91241 0.85432 0.87030 0.85766 0.85542 0.84705 0.94737 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.53 10.88 21.45 0.23 -50.30 16 2 C 0.02 1.24 5.26 84.66 0.45 1.69 16 3 Si 0.96 42.82 29.54 68.60 2.03 44.85 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.55 -30.27 8.10 25.60 0.21 -30.06 16 8 H 0.06 3.16 7.34 -2.91 -0.02 3.13 16 9 C 0.22 11.51 0.99 -10.66 -0.01 11.50 16 10 O -0.60 -33.23 12.93 -148.98 -1.93 -35.16 16 11 C -0.11 -5.47 5.50 31.80 0.17 -5.29 16 12 C 0.05 1.83 5.10 86.65 0.44 2.27 16 13 N -0.51 -19.17 5.40 -883.00 -4.76 -23.94 16 14 C 0.05 1.37 5.03 86.30 0.43 1.80 16 15 C -0.12 -2.93 5.20 30.59 0.16 -2.77 16 16 C 0.15 2.74 6.02 86.38 0.52 3.26 16 17 N -0.62 -11.35 2.96 -951.43 -2.82 -14.17 16 18 C 0.06 0.41 7.70 86.64 0.67 1.08 16 19 C 0.03 0.24 8.23 72.35 0.60 0.83 16 20 O -0.35 -7.65 11.09 -47.33 -0.52 -8.17 16 21 C 0.63 17.20 8.85 129.91 1.15 18.35 16 22 O -0.58 -22.25 17.54 19.64 0.34 -21.91 16 23 C 0.06 2.69 6.17 86.44 0.53 3.23 16 24 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 25 H 0.38 21.28 7.05 -74.06 -0.52 20.75 16 26 H 0.04 2.25 8.06 -2.39 -0.02 2.23 16 27 H 0.05 2.58 7.85 -2.39 -0.02 2.56 16 28 H 0.08 3.01 7.66 -2.39 -0.02 2.99 16 29 H 0.03 1.11 8.00 -2.39 -0.02 1.09 16 30 H 0.02 0.74 7.81 -2.39 -0.02 0.72 16 31 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.04 1.21 6.79 -2.39 -0.02 1.19 16 34 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 35 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 36 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 38 H 0.13 0.36 8.14 -2.38 -0.02 0.35 16 39 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 40 H 0.03 1.50 7.39 -2.39 -0.02 1.49 16 41 H 0.08 3.44 7.39 -2.39 -0.02 3.43 16 Total: -1.00 -74.55 332.37 -1.61 -76.15 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.51 Total: 26.77 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.32 Total: 5.87 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -7.35 Total: -88.40 kcal Atomic # 8 Polarization: -63.13 SS G_CDS: -2.11 Total: -65.24 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -74.55 -1.61 -76.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.252 kcal (2) G-P(sol) polarization free energy of solvation -74.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds