Wall clock time and date at job start Tue Mar 31 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 110.27426 * 57.91020 * 9 7 2 11 11 C 1.54597 * 110.30708 * 295.71637 * 9 7 2 12 12 C 1.54937 * 102.92462 * 219.12443 * 11 9 7 13 13 N 1.48539 * 103.22274 * 37.41216 * 12 11 9 14 14 C 1.46900 * 110.99941 * 200.27849 * 13 12 11 15 15 C 1.53003 * 109.47089 * 287.39589 * 14 13 12 16 16 C 1.53001 * 109.46667 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46648 * 180.02562 * 16 15 14 18 18 C 1.47094 * 125.56187 * 90.00581 * 17 16 15 19 19 C 1.54093 * 103.77880 * 179.97438 * 18 17 16 20 20 O 1.45705 * 104.00535 * 0.02562 * 19 18 17 21 21 C 1.33769 * 109.47713 * 359.75224 * 20 19 18 22 22 O 1.21509 * 123.07108 * 180.24496 * 21 20 19 23 23 C 1.47901 * 105.82046 * 320.79537 * 13 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 0.96703 * 114.00355 * 300.70114 * 10 9 7 26 26 H 1.09004 * 110.72659 * 337.48631 * 11 9 7 27 27 H 1.09005 * 110.72577 * 100.77084 * 11 9 7 28 28 H 1.09000 * 110.66656 * 278.98674 * 12 11 9 29 29 H 1.08998 * 110.81602 * 155.91435 * 12 11 9 30 30 H 1.08996 * 109.47167 * 47.40308 * 14 13 12 31 31 H 1.09002 * 109.46931 * 167.39937 * 14 13 12 32 32 H 1.08990 * 109.47315 * 300.00183 * 15 14 13 33 33 H 1.08997 * 109.46543 * 60.00599 * 15 14 13 34 34 H 1.08998 * 109.47459 * 299.99827 * 16 15 14 35 35 H 1.09002 * 109.47131 * 60.00484 * 16 15 14 36 36 H 1.09001 * 110.56005 * 298.54675 * 18 17 16 37 37 H 1.08997 * 110.56676 * 61.40013 * 18 17 16 38 38 H 1.08998 * 110.52079 * 118.62234 * 19 18 17 39 39 H 1.08996 * 110.52222 * 241.36833 * 19 18 17 40 40 H 1.08997 * 109.91359 * 265.97067 * 23 13 12 41 41 H 1.09004 * 109.91438 * 144.67975 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3820 -2.5692 -1.1380 11 6 0.4434 -2.6525 1.3035 12 6 0.6094 -4.1559 1.6391 13 7 2.0111 -4.4407 1.2383 14 6 2.2161 -5.8799 1.0270 15 6 2.2236 -6.5978 2.3782 16 6 2.4365 -8.0968 2.1580 17 7 2.4431 -8.7842 3.4517 18 6 1.2632 -9.3425 4.1298 19 6 1.8354 -9.9395 5.4300 20 8 3.2626 -9.6574 5.3494 21 6 3.5258 -9.0114 4.2080 22 8 4.6439 -8.6598 3.8877 23 6 2.2344 -3.6842 -0.0128 24 1 -0.4849 0.8401 0.0041 25 1 -0.2737 -1.8594 -1.1750 26 1 0.8672 -2.0319 2.0930 27 1 -0.6061 -2.4074 1.1403 28 1 -0.0872 -4.7592 1.0570 29 1 0.4710 -4.3323 2.7058 30 1 1.4092 -6.2751 0.4100 31 1 3.1699 -6.0411 0.5247 32 1 3.0305 -6.2025 2.9951 33 1 1.2698 -6.4366 2.8804 34 1 1.6292 -8.4918 1.5412 35 1 3.3902 -8.2584 1.6554 36 1 0.5428 -8.5559 4.3542 37 1 0.8041 -10.1211 3.5206 38 1 1.3982 -9.4498 6.3001 39 1 1.6594 -11.0146 5.4667 40 1 2.0390 -4.3239 -0.8734 41 1 3.2597 -3.3156 -0.0459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829975618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:21 Heat of formation + Delta-G solvation = -113.165776 kcal Electronic energy + Delta-G solvation = -22736.500470 eV Core-core repulsion = 19230.781451 eV Total energy + Delta-G solvation = -3505.719019 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.72432 -38.51048 -37.36080 -36.36753 -34.94241 -32.49945 -32.05793 -30.14289 -28.82818 -28.01040 -25.69272 -24.12952 -23.83871 -22.06458 -20.94198 -20.12420 -19.35345 -17.62085 -17.41514 -17.07547 -17.02871 -15.56978 -15.13281 -14.94650 -14.69245 -14.48557 -14.35902 -14.11518 -13.93903 -13.71515 -13.12753 -12.77535 -12.59339 -12.11782 -12.02318 -11.84634 -11.71492 -11.28340 -11.03091 -10.96032 -10.92238 -10.71251 -10.65139 -10.49959 -10.37819 -10.28728 -9.92542 -9.21071 -9.10848 -8.56198 -8.10358 -7.79257 -6.18386 -4.23967 2.20719 2.57077 3.20633 3.27823 3.31697 3.35771 3.80648 4.27002 4.34019 4.37583 4.50389 4.83067 4.88432 5.06444 5.08897 5.16459 5.22309 5.29989 5.46441 5.59247 5.72536 5.81375 5.95663 6.06195 6.15870 6.20249 6.26406 6.34372 6.47069 6.50575 6.93508 7.05864 7.12663 7.29377 7.51761 7.66305 7.72572 7.84828 7.86843 8.18418 8.77346 9.42632 9.53796 10.89476 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033134 B = 0.003072 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.863320 B = 9112.541559 C = 9301.941296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.243 3.757 10 O -0.595 6.595 11 C -0.119 4.119 12 C 0.032 3.968 13 N -0.514 5.514 14 C 0.051 3.949 15 C -0.131 4.131 16 C 0.147 3.853 17 N -0.629 5.629 18 C 0.064 3.936 19 C 0.041 3.959 20 O -0.331 6.331 21 C 0.641 3.359 22 O -0.518 6.518 23 C 0.055 3.945 24 H 0.267 0.733 25 H 0.383 0.617 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.036 0.964 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -18.497 7.737 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.080 0.920 9 C 0.203 3.797 10 O -0.405 6.405 11 C -0.158 4.158 12 C -0.095 4.095 13 N -0.239 5.239 14 C -0.079 4.079 15 C -0.170 4.170 16 C 0.026 3.974 17 N -0.377 5.377 18 C -0.060 4.060 19 C -0.034 4.034 20 O -0.242 6.242 21 C 0.395 3.605 22 O -0.403 6.403 23 C -0.073 4.073 24 H 0.077 0.923 25 H 0.235 0.765 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.054 0.946 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.496 -18.632 8.005 20.334 hybrid contribution -0.784 1.146 -0.423 1.452 sum -2.281 -17.486 7.582 19.195 Atomic orbital electron populations 1.69608 1.05957 1.27478 1.51138 1.25012 0.95008 0.99464 0.93881 0.86510 0.79545 0.82297 0.78800 1.20133 1.21244 1.20081 1.21681 0.93544 0.90649 1.50757 0.92001 1.19340 0.86205 0.91588 0.82544 1.86081 1.50707 1.55288 1.48448 1.22988 1.00708 0.91535 1.00522 1.23308 0.88351 0.98988 0.98880 1.64742 1.23523 1.05318 1.30280 1.22121 1.00811 0.89680 0.95269 1.21931 1.03115 0.93048 0.98867 1.21383 1.03753 0.91769 0.80470 1.48110 1.06968 1.59928 1.22679 1.22817 0.90013 0.99801 0.93370 1.24282 0.77414 1.02890 0.98789 1.87286 1.27065 1.71453 1.38362 1.18514 0.85449 0.77535 0.79045 1.91067 1.21718 1.55146 1.72334 1.22849 1.00607 0.94957 0.88855 0.92330 0.76532 0.91414 0.91782 0.94974 0.91941 0.94961 0.91046 0.90485 0.91754 0.89818 0.89228 0.88860 0.89032 0.87594 0.87708 0.94607 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.17 10.89 55.43 0.60 -23.57 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.36 8.10 -34.44 -0.28 -14.64 16 8 H 0.06 1.68 7.34 -52.49 -0.39 1.30 16 9 C 0.24 6.09 0.99 -90.42 -0.09 6.00 16 10 O -0.60 -15.57 12.92 -35.23 -0.46 -16.02 16 11 C -0.12 -2.75 5.50 -24.87 -0.14 -2.89 16 12 C 0.03 0.62 5.91 -1.89 -0.01 0.61 16 13 N -0.51 -9.89 5.24 -230.45 -1.21 -11.10 16 14 C 0.05 0.76 4.71 -3.82 -0.02 0.74 16 15 C -0.13 -1.66 5.63 -26.73 -0.15 -1.81 16 16 C 0.15 1.50 6.02 -4.04 -0.02 1.48 16 17 N -0.63 -6.40 2.96 -178.84 -0.53 -6.93 16 18 C 0.06 0.35 7.70 -3.15 -0.02 0.33 16 19 C 0.04 0.22 8.23 37.73 0.31 0.53 16 20 O -0.33 -3.72 11.09 -37.83 -0.42 -4.14 16 21 C 0.64 8.66 8.85 53.71 0.48 9.14 16 22 O -0.52 -9.28 17.54 -19.12 -0.34 -9.62 16 23 C 0.05 1.20 6.13 -2.76 -0.02 1.19 16 24 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.38 10.17 7.07 45.56 0.32 10.49 16 26 H 0.07 1.67 7.86 -51.93 -0.41 1.27 16 27 H 0.06 1.53 8.06 -51.93 -0.42 1.11 16 28 H 0.03 0.60 7.81 -51.93 -0.41 0.19 16 29 H 0.06 1.08 7.80 -51.93 -0.40 0.68 16 30 H 0.03 0.46 7.83 -51.93 -0.41 0.06 16 31 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.79 7.36 -51.93 -0.38 0.41 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.04 0.77 7.59 -51.93 -0.39 0.38 16 41 H 0.08 1.77 7.39 -51.93 -0.38 1.39 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -32.44 333.81 -8.16 -40.60 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.77 Total: 7.43 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -0.06 Total: 2.38 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -1.13 Total: -41.61 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -1.21 Total: -29.78 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.44 -8.16 -40.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.563 kcal (2) G-P(sol) polarization free energy of solvation -32.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds