Wall clock time and date at job start Tue Mar 31 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 O 1.42896 * 110.27426 * 57.91020 * 9 7 2 11 11 C 1.54597 * 110.30708 * 295.71637 * 9 7 2 12 12 C 1.54937 * 102.92462 * 219.12443 * 11 9 7 13 13 N 1.48539 * 103.22274 * 37.41216 * 12 11 9 14 14 C 1.46900 * 110.99941 * 200.27849 * 13 12 11 15 15 C 1.53003 * 109.47089 * 287.39589 * 14 13 12 16 16 C 1.53001 * 109.46667 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.46648 * 180.02562 * 16 15 14 18 18 C 1.47094 * 125.56187 * 90.00581 * 17 16 15 19 19 C 1.54093 * 103.77880 * 179.97438 * 18 17 16 20 20 O 1.45705 * 104.00535 * 0.02562 * 19 18 17 21 21 C 1.33769 * 109.47713 * 359.75224 * 20 19 18 22 22 O 1.21509 * 123.07108 * 180.24496 * 21 20 19 23 23 C 1.47901 * 105.82046 * 320.79537 * 13 12 11 24 24 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 25 25 H 0.96703 * 114.00355 * 300.70114 * 10 9 7 26 26 H 1.09004 * 110.72659 * 337.48631 * 11 9 7 27 27 H 1.09005 * 110.72577 * 100.77084 * 11 9 7 28 28 H 1.09000 * 110.66656 * 278.98674 * 12 11 9 29 29 H 1.08998 * 110.81602 * 155.91435 * 12 11 9 30 30 H 1.08996 * 109.47167 * 47.40308 * 14 13 12 31 31 H 1.09002 * 109.46931 * 167.39937 * 14 13 12 32 32 H 1.08990 * 109.47315 * 300.00183 * 15 14 13 33 33 H 1.08997 * 109.46543 * 60.00599 * 15 14 13 34 34 H 1.08998 * 109.47459 * 299.99827 * 16 15 14 35 35 H 1.09002 * 109.47131 * 60.00484 * 16 15 14 36 36 H 1.09001 * 110.56005 * 298.54675 * 18 17 16 37 37 H 1.08997 * 110.56676 * 61.40013 * 18 17 16 38 38 H 1.08998 * 110.52079 * 118.62234 * 19 18 17 39 39 H 1.08996 * 110.52222 * 241.36833 * 19 18 17 40 40 H 1.08997 * 109.91359 * 265.97067 * 23 13 12 41 41 H 1.09004 * 109.91438 * 144.67975 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 8 0.3820 -2.5692 -1.1380 11 6 0.4434 -2.6525 1.3035 12 6 0.6094 -4.1559 1.6391 13 7 2.0111 -4.4407 1.2383 14 6 2.2161 -5.8799 1.0270 15 6 2.2236 -6.5978 2.3782 16 6 2.4365 -8.0968 2.1580 17 7 2.4431 -8.7842 3.4517 18 6 1.2632 -9.3425 4.1298 19 6 1.8354 -9.9395 5.4300 20 8 3.2626 -9.6574 5.3494 21 6 3.5258 -9.0114 4.2080 22 8 4.6439 -8.6598 3.8877 23 6 2.2344 -3.6842 -0.0128 24 1 -0.4849 0.8401 0.0041 25 1 -0.2737 -1.8594 -1.1750 26 1 0.8672 -2.0319 2.0930 27 1 -0.6061 -2.4074 1.1403 28 1 -0.0872 -4.7592 1.0570 29 1 0.4710 -4.3323 2.7058 30 1 1.4092 -6.2751 0.4100 31 1 3.1699 -6.0411 0.5247 32 1 3.0305 -6.2025 2.9951 33 1 1.2698 -6.4366 2.8804 34 1 1.6292 -8.4918 1.5412 35 1 3.3902 -8.2584 1.6554 36 1 0.5428 -8.5559 4.3542 37 1 0.8041 -10.1211 3.5206 38 1 1.3982 -9.4498 6.3001 39 1 1.6594 -11.0146 5.4667 40 1 2.0390 -4.3239 -0.8734 41 1 3.2597 -3.3156 -0.0459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829975618.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:20 Heat of formation + Delta-G solvation = -138.526222 kcal Electronic energy + Delta-G solvation = -22737.600181 eV Core-core repulsion = 19230.781451 eV Total energy + Delta-G solvation = -3506.818730 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.50769 -40.16507 -38.35581 -37.49248 -36.44224 -34.12875 -33.70117 -31.14253 -30.06293 -29.73200 -27.12907 -25.65096 -24.48958 -23.32834 -21.91818 -21.55609 -21.19334 -19.11035 -18.40750 -18.16782 -17.78483 -16.97777 -16.86046 -16.32526 -16.13508 -15.80426 -15.56510 -15.04908 -14.96249 -14.83446 -14.32262 -14.08561 -13.95483 -13.51497 -13.34646 -13.18021 -13.06178 -12.89490 -12.68913 -12.51709 -12.33082 -12.30087 -12.01349 -11.87712 -11.79729 -11.64020 -11.54016 -11.06782 -10.60365 -10.10566 -9.92701 -9.30793 -8.22138 -6.35101 1.41561 1.41734 1.43840 1.49906 1.62006 2.39092 2.61958 2.98428 3.14077 3.39270 3.68850 3.89668 3.98369 4.01598 4.16024 4.21385 4.36069 4.37386 4.48443 4.52198 4.54086 4.58229 4.63393 4.73383 4.80511 4.82586 4.84601 5.08729 5.15637 5.21048 5.28766 5.42400 5.43847 5.60694 5.77152 6.00388 6.15973 6.28015 6.34107 6.68562 6.92078 7.34716 7.45685 8.83792 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.033134 B = 0.003072 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.863320 B = 9112.541559 C = 9301.941296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.028 3.972 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.557 4.557 8 H 0.051 0.949 9 C 0.226 3.774 10 O -0.601 6.601 11 C -0.113 4.113 12 C 0.046 3.954 13 N -0.525 5.525 14 C 0.050 3.950 15 C -0.117 4.117 16 C 0.150 3.850 17 N -0.625 5.625 18 C 0.060 3.940 19 C 0.035 3.965 20 O -0.352 6.352 21 C 0.634 3.366 22 O -0.580 6.580 23 C 0.062 3.938 24 H 0.270 0.730 25 H 0.378 0.622 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.039 0.961 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -20.038 8.352 22.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.172 4.172 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.187 3.813 10 O -0.410 6.410 11 C -0.152 4.152 12 C -0.082 4.082 13 N -0.250 5.250 14 C -0.078 4.078 15 C -0.156 4.156 16 C 0.030 3.970 17 N -0.371 5.371 18 C -0.061 4.061 19 C -0.038 4.038 20 O -0.262 6.262 21 C 0.388 3.612 22 O -0.469 6.469 23 C -0.066 4.066 24 H 0.079 0.921 25 H 0.228 0.772 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.057 0.943 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.109 -20.208 8.640 22.197 hybrid contribution -0.377 1.590 -0.579 1.734 sum -3.487 -18.618 8.060 20.586 Atomic orbital electron populations 1.69679 1.06685 1.28201 1.50826 1.25672 0.95892 1.02170 0.93439 0.85611 0.78485 0.78917 0.78585 1.20047 1.20343 1.20009 1.21957 0.93363 0.92384 1.51851 0.93112 1.19591 0.86742 0.92084 0.82912 1.86069 1.50718 1.54950 1.49296 1.22768 0.99214 0.94319 0.98863 1.23209 0.88523 0.95933 1.00496 1.64713 1.23643 1.07858 1.28770 1.22205 1.01487 0.87157 0.96973 1.21772 1.02442 0.94423 0.96952 1.21348 1.04508 0.90231 0.80957 1.48189 1.07688 1.58957 1.22298 1.23213 0.88461 1.01074 0.93400 1.24798 0.74223 1.05189 0.99634 1.87240 1.30789 1.70906 1.37268 1.18767 0.85405 0.77342 0.79650 1.91003 1.24263 1.57703 1.73921 1.22647 0.99081 0.94415 0.90413 0.92104 0.77168 0.93787 0.93058 0.93673 0.89575 0.93223 0.90965 0.93536 0.90642 0.86119 0.90634 0.87218 0.85923 0.85532 0.84728 0.94305 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.27 10.89 21.45 0.23 -49.04 16 2 C 0.03 1.52 5.27 84.66 0.45 1.97 16 3 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.56 -30.88 8.10 25.60 0.21 -30.67 16 8 H 0.05 2.84 7.34 -2.91 -0.02 2.82 16 9 C 0.23 11.44 0.99 -10.66 -0.01 11.43 16 10 O -0.60 -31.66 12.92 -148.98 -1.93 -33.58 16 11 C -0.11 -5.23 5.50 31.80 0.17 -5.05 16 12 C 0.05 1.67 5.91 86.65 0.51 2.18 16 13 N -0.53 -19.63 5.24 -883.02 -4.63 -24.26 16 14 C 0.05 1.41 4.71 86.30 0.41 1.82 16 15 C -0.12 -2.74 5.63 30.60 0.17 -2.57 16 16 C 0.15 2.71 6.02 86.38 0.52 3.23 16 17 N -0.62 -11.31 2.96 -951.45 -2.82 -14.13 16 18 C 0.06 0.42 7.70 86.64 0.67 1.09 16 19 C 0.03 0.25 8.23 72.35 0.60 0.84 16 20 O -0.35 -7.52 11.09 -47.30 -0.52 -8.04 16 21 C 0.63 16.90 8.85 129.91 1.15 18.05 16 22 O -0.58 -21.58 17.54 19.66 0.34 -21.23 16 23 C 0.06 2.75 6.13 86.44 0.53 3.28 16 24 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 25 H 0.38 20.35 7.07 -74.06 -0.52 19.83 16 26 H 0.04 2.20 7.86 -2.38 -0.02 2.18 16 27 H 0.05 2.46 8.06 -2.38 -0.02 2.44 16 28 H 0.05 1.54 7.81 -2.39 -0.02 1.52 16 29 H 0.09 2.74 7.80 -2.39 -0.02 2.72 16 30 H 0.05 1.26 7.83 -2.39 -0.02 1.24 16 31 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.60 7.36 -2.39 -0.02 1.58 16 34 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.61 7.92 -2.39 -0.02 1.59 16 36 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.04 1.65 7.59 -2.39 -0.02 1.63 16 41 H 0.07 3.05 7.39 -2.38 -0.02 3.03 16 Total: -1.00 -73.15 333.81 -1.42 -74.57 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.50 Total: 24.91 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.37 Total: 5.59 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -7.22 Total: -87.43 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -2.10 Total: -62.86 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -73.15 -1.42 -74.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829975618.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.954 kcal (2) G-P(sol) polarization free energy of solvation -73.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds