Wall clock time and date at job start Tue Mar 31 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 C 1.50699 * 109.44585 * 181.23845 * 8 7 6 10 10 O 1.21281 * 119.99908 * 239.79981 * 9 8 7 11 11 N 1.34773 * 120.00159 * 59.78834 * 9 8 7 12 12 C 1.46493 * 120.00397 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47435 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47062 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00302 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99841 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99656 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00037 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47080 * 59.99525 * 18 16 14 20 20 H 1.48495 * 109.47235 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47111 * 300.00042 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 23 23 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 24 24 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 25 25 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 26 26 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 28 28 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 29 29 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 30 30 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 31 31 H 1.09007 * 109.35101 * 301.12962 * 8 7 6 32 32 H 0.97001 * 119.99773 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47297 * 300.01137 * 12 11 9 34 34 H 1.08999 * 109.46821 * 60.00418 * 12 11 9 35 35 H 1.08996 * 109.46807 * 300.00499 * 13 12 11 36 36 H 1.09004 * 109.46374 * 60.00405 * 13 12 11 37 37 H 0.97004 * 119.99314 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49876 * 178.74890 * 22 8 7 39 39 H 1.09005 * 109.52615 * 58.67140 * 22 8 7 40 40 H 1.08998 * 109.58787 * 246.20220 * 23 5 3 41 41 H 1.09007 * 109.58600 * 6.48533 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 6 7.0229 1.4596 -2.1961 10 8 7.0804 0.5516 -2.9980 11 7 7.8521 2.5156 -2.3132 12 6 8.8226 2.5670 -3.4094 13 6 9.6339 3.8605 -3.3122 14 6 10.6318 3.9136 -4.4402 15 1 10.6827 3.1053 -5.1547 16 6 11.4807 4.9935 -4.5594 17 7 11.4191 5.9775 -3.6890 18 14 12.7182 5.0589 -5.9572 19 1 11.9998 5.0219 -7.2564 20 1 13.5055 6.3144 -5.8629 21 1 13.6325 3.8925 -5.8638 22 6 5.2133 0.1129 -1.1659 23 6 4.2229 0.0467 0.0017 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.3564 3.3686 -0.1174 28 1 4.6248 2.7042 0.9419 29 1 4.5408 2.5729 -2.1077 30 1 5.6649 3.5333 -1.1155 31 1 6.5514 1.4347 -0.1151 32 1 7.8062 3.2418 -1.6717 33 1 9.4941 1.7112 -3.3405 34 1 8.2954 2.5391 -4.3630 35 1 8.9625 4.7164 -3.3809 36 1 10.1611 3.8878 -2.3585 37 1 12.0161 6.7374 -3.7732 38 1 5.8869 -0.7428 -1.1202 39 1 4.6664 0.0954 -2.1087 40 1 4.7699 -0.0274 0.9415 41 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832022552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:33 Heat of formation + Delta-G solvation = -133.672691 kcal Electronic energy + Delta-G solvation = -22295.186309 eV Core-core repulsion = 18788.578044 eV Total energy + Delta-G solvation = -3506.608266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95116 -39.72945 -37.89503 -36.39746 -34.91800 -33.39654 -32.76698 -31.37725 -29.68628 -28.08297 -26.21400 -24.55309 -23.57180 -22.22503 -21.01858 -20.46680 -19.71027 -18.38080 -17.38353 -16.84670 -16.75371 -16.33923 -15.23376 -15.22260 -15.03019 -14.67248 -14.51815 -14.30867 -13.96374 -13.72742 -13.41426 -13.18097 -12.67285 -12.55819 -12.32974 -12.29982 -12.00211 -11.54188 -11.23534 -11.05598 -11.04541 -11.03022 -10.86177 -10.69757 -10.62868 -10.34528 -9.81339 -9.48618 -9.24874 -9.00963 -8.56561 -8.37687 -6.11309 -4.14275 1.87662 2.55320 2.94688 3.29851 3.33819 3.36530 3.57507 3.65347 4.39606 4.44082 4.56812 4.70316 4.78529 4.84798 4.92555 4.99103 5.09202 5.18439 5.20467 5.25711 5.41114 5.45247 5.48596 5.58834 5.70900 5.90048 6.02232 6.11209 6.17897 6.31887 6.32257 6.71010 6.88749 7.02821 7.48725 7.58885 7.86562 7.98000 7.99974 8.25462 8.61607 8.91443 9.50640 11.00200 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041593 B = 0.002659 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.025561 B =10526.452766 C =10857.339284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.575 6.575 5 N -0.593 5.593 6 C 0.129 3.871 7 C -0.128 4.128 8 C -0.109 4.109 9 C 0.509 3.491 10 O -0.550 6.550 11 N -0.721 5.721 12 C 0.121 3.879 13 C 0.013 3.987 14 C -0.523 4.523 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.114 4.114 23 C 0.112 3.888 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.397 0.603 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.263 0.737 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.227 -10.568 11.551 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.404 3.596 4 O -0.464 6.464 5 N -0.334 5.334 6 C 0.008 3.992 7 C -0.167 4.167 8 C -0.131 4.131 9 C 0.294 3.706 10 O -0.428 6.428 11 N -0.371 5.371 12 C -0.001 4.001 13 C -0.024 4.024 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.152 4.152 23 C -0.011 4.011 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.231 0.769 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.360 -10.757 11.002 23.956 hybrid contribution 0.674 0.561 -0.454 0.987 sum -17.687 -10.197 10.549 22.980 Atomic orbital electron populations 1.23194 0.74478 1.03439 1.02727 1.86231 1.24103 1.31062 1.87072 1.18033 0.83183 0.82123 0.76266 1.90991 1.64243 1.34935 1.56229 1.46967 1.01880 1.08809 1.75731 1.21680 0.95289 0.83661 0.98618 1.21977 0.97150 0.97918 0.99612 1.21354 0.95786 0.96980 0.98955 1.20453 0.81578 0.82395 0.86153 1.90673 1.70796 1.37547 1.43811 1.46349 1.37130 1.21924 1.31660 1.21722 0.89586 1.01203 0.87616 1.19315 0.94536 0.90527 0.98051 1.21013 1.18116 1.05353 1.11672 0.92331 1.24998 0.97429 0.95498 0.96356 1.69945 1.38630 1.08916 1.35798 0.86567 0.81145 0.77345 0.82449 1.20111 1.21231 1.20105 1.21740 0.97508 0.97167 0.98829 1.21843 0.93767 0.86435 0.99023 0.91899 0.91845 0.87980 0.88179 0.90468 0.90604 0.89249 0.88313 0.76925 0.92605 0.92625 0.95954 0.95965 0.92770 0.89481 0.90584 0.90838 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -3.76 9.20 -40.31 -0.37 -4.13 16 3 C 0.65 7.81 8.43 54.06 0.46 8.26 16 4 O -0.57 -8.46 15.55 -19.28 -0.30 -8.76 16 5 N -0.59 -6.02 2.97 -178.53 -0.53 -6.55 16 6 C 0.13 1.17 6.43 -3.71 -0.02 1.15 16 7 C -0.13 -1.25 5.27 -26.59 -0.14 -1.39 16 8 C -0.11 -1.18 2.48 -91.72 -0.23 -1.40 16 9 C 0.51 8.00 7.16 -10.99 -0.08 7.92 16 10 O -0.55 -10.83 15.98 5.56 0.09 -10.74 16 11 N -0.72 -11.88 5.44 -60.30 -0.33 -12.20 16 12 C 0.12 2.52 5.61 -4.04 -0.02 2.49 16 13 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 14 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.11 -1.16 4.66 -26.59 -0.12 -1.29 16 23 C 0.11 0.93 6.45 -3.68 -0.02 0.90 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 1.01 7.00 -51.93 -0.36 0.65 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.78 7.53 -51.93 -0.39 0.39 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.40 5.56 7.87 -40.82 -0.32 5.24 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 39 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.74 6.93 -51.92 -0.36 0.38 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -34.02 341.11 -6.72 -40.74 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.47 Total: 0.28 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 0.33 Total: 5.14 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.12 Total: -43.92 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.58 Total: -23.63 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.02 -6.72 -40.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.930 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds