Wall clock time and date at job start Tue Mar 31 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 C 1.50699 * 109.44585 * 181.23845 * 8 7 6 10 10 O 1.21281 * 119.99908 * 239.79981 * 9 8 7 11 11 N 1.34773 * 120.00159 * 59.78834 * 9 8 7 12 12 C 1.46493 * 120.00397 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47435 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47062 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00302 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99841 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99656 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00037 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47080 * 59.99525 * 18 16 14 20 20 H 1.48495 * 109.47235 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47111 * 300.00042 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 23 23 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 24 24 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 25 25 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 26 26 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 28 28 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 29 29 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 30 30 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 31 31 H 1.09007 * 109.35101 * 301.12962 * 8 7 6 32 32 H 0.97001 * 119.99773 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.47297 * 300.01137 * 12 11 9 34 34 H 1.08999 * 109.46821 * 60.00418 * 12 11 9 35 35 H 1.08996 * 109.46807 * 300.00499 * 13 12 11 36 36 H 1.09004 * 109.46374 * 60.00405 * 13 12 11 37 37 H 0.97004 * 119.99314 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49876 * 178.74890 * 22 8 7 39 39 H 1.09005 * 109.52615 * 58.67140 * 22 8 7 40 40 H 1.08998 * 109.58787 * 246.20220 * 23 5 3 41 41 H 1.09007 * 109.58600 * 6.48533 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 6 7.0229 1.4596 -2.1961 10 8 7.0804 0.5516 -2.9980 11 7 7.8521 2.5156 -2.3132 12 6 8.8226 2.5670 -3.4094 13 6 9.6339 3.8605 -3.3122 14 6 10.6318 3.9136 -4.4402 15 1 10.6827 3.1053 -5.1547 16 6 11.4807 4.9935 -4.5594 17 7 11.4191 5.9775 -3.6890 18 14 12.7182 5.0589 -5.9572 19 1 11.9998 5.0219 -7.2564 20 1 13.5055 6.3144 -5.8629 21 1 13.6325 3.8925 -5.8638 22 6 5.2133 0.1129 -1.1659 23 6 4.2229 0.0467 0.0017 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.3564 3.3686 -0.1174 28 1 4.6248 2.7042 0.9419 29 1 4.5408 2.5729 -2.1077 30 1 5.6649 3.5333 -1.1155 31 1 6.5514 1.4347 -0.1151 32 1 7.8062 3.2418 -1.6717 33 1 9.4941 1.7112 -3.3405 34 1 8.2954 2.5391 -4.3630 35 1 8.9625 4.7164 -3.3809 36 1 10.1611 3.8878 -2.3585 37 1 12.0161 6.7374 -3.7732 38 1 5.8869 -0.7428 -1.1202 39 1 4.6664 0.0954 -2.1087 40 1 4.7699 -0.0274 0.9415 41 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832022552.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:33 Heat of formation + Delta-G solvation = -157.485320 kcal Electronic energy + Delta-G solvation = -22296.218902 eV Core-core repulsion = 18788.578044 eV Total energy + Delta-G solvation = -3507.640859 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81467 -40.90945 -38.83016 -37.30067 -36.58286 -34.87023 -34.18019 -32.17908 -31.44772 -28.80709 -27.38326 -26.14153 -24.36057 -23.37444 -22.66382 -21.52294 -20.71861 -19.20787 -18.60677 -18.24026 -17.84150 -17.57270 -16.69757 -16.49531 -16.41470 -15.84278 -15.47089 -15.22385 -15.11593 -14.71788 -14.62169 -14.27337 -14.19989 -13.70045 -13.39747 -13.20747 -13.00296 -12.93913 -12.89332 -12.55015 -12.30780 -12.21783 -11.91947 -11.80057 -11.72218 -11.66091 -11.48440 -11.46532 -10.73784 -10.59786 -9.99398 -9.84468 -8.24111 -6.34328 1.14288 1.41756 1.43604 1.51666 1.64948 1.69655 2.27576 2.46342 2.90989 3.10624 3.57383 3.72898 3.76933 4.00349 4.23314 4.30523 4.34193 4.36918 4.38173 4.49623 4.50719 4.65516 4.70382 4.72449 4.77613 4.80870 4.86746 4.94072 5.10000 5.26010 5.27884 5.33063 5.42733 5.51022 5.59480 5.79459 6.16925 6.21310 6.66385 6.78806 7.15417 7.31771 7.34881 8.87301 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041593 B = 0.002659 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.025561 B =10526.452766 C =10857.339284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.373 6.373 3 C 0.643 3.357 4 O -0.610 6.610 5 N -0.593 5.593 6 C 0.131 3.869 7 C -0.122 4.122 8 C -0.097 4.097 9 C 0.508 3.492 10 O -0.591 6.591 11 N -0.716 5.716 12 C 0.140 3.860 13 C 0.024 3.976 14 C -0.549 4.549 15 H 0.057 0.943 16 C 0.008 3.992 17 N -0.925 5.925 18 Si 0.963 3.037 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.110 4.110 23 C 0.118 3.882 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.136 0.864 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.052 0.948 30 H 0.102 0.898 31 H 0.134 0.866 32 H 0.411 0.589 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.009 0.991 36 H 0.011 0.989 37 H 0.266 0.734 38 H 0.088 0.912 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.208 -11.274 12.644 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.286 6.286 3 C 0.398 3.602 4 O -0.502 6.502 5 N -0.333 5.333 6 C 0.010 3.990 7 C -0.160 4.160 8 C -0.118 4.118 9 C 0.296 3.704 10 O -0.472 6.472 11 N -0.367 5.367 12 C 0.016 3.984 13 C -0.014 4.014 14 C -0.587 4.587 15 H 0.075 0.925 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.148 4.148 23 C -0.003 4.003 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.154 0.846 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.152 0.848 32 H 0.247 0.753 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.350 -11.476 12.119 24.805 hybrid contribution 0.623 0.746 -0.800 1.259 sum -17.727 -10.730 11.319 23.612 Atomic orbital electron populations 1.23482 0.72967 1.05578 1.02424 1.86237 1.25626 1.30025 1.86729 1.18284 0.83715 0.82179 0.76021 1.90963 1.65129 1.36135 1.57936 1.47144 1.01523 1.09765 1.74861 1.21746 0.94767 0.83057 0.99452 1.21935 0.97030 0.98028 0.99048 1.21378 0.94720 0.97706 0.98006 1.21328 0.81419 0.81007 0.86671 1.90657 1.71905 1.38993 1.45677 1.46167 1.36574 1.23018 1.30918 1.21186 0.89769 0.98836 0.88593 1.19122 0.94048 0.91642 0.96581 1.21450 1.19102 1.05544 1.12601 0.92483 1.25851 0.99317 0.95095 0.98856 1.70045 1.39553 1.09461 1.37399 0.85529 0.78739 0.77656 0.79317 1.19496 1.20571 1.19320 1.21696 0.97622 0.96880 0.98651 1.21924 0.93255 0.85901 0.99260 0.91876 0.92543 0.84618 0.89370 0.87413 0.92865 0.87927 0.84820 0.75252 0.93636 0.94031 0.97309 0.97111 0.92530 0.89350 0.93104 0.87879 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 10.56 113.37 1.20 1.83 16 2 O -0.37 -7.06 9.20 -55.44 -0.51 -7.57 16 3 C 0.64 14.82 8.43 129.79 1.09 15.92 16 4 O -0.61 -17.83 15.55 19.81 0.31 -17.53 16 5 N -0.59 -10.89 2.97 -949.14 -2.82 -13.71 16 6 C 0.13 2.09 6.43 86.36 0.56 2.65 16 7 C -0.12 -2.18 5.27 30.68 0.16 -2.02 16 8 C -0.10 -1.88 2.48 -11.50 -0.03 -1.91 16 9 C 0.51 15.54 7.16 87.66 0.63 16.17 16 10 O -0.59 -23.35 15.98 -3.03 -0.05 -23.40 16 11 N -0.72 -23.12 5.44 -463.08 -2.52 -25.64 16 12 C 0.14 5.89 5.61 86.38 0.48 6.37 16 13 C 0.02 1.16 5.09 29.85 0.15 1.31 16 14 C -0.55 -30.41 9.11 25.60 0.23 -30.18 16 15 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 16 C 0.01 0.43 5.46 84.66 0.46 0.89 16 17 N -0.93 -53.70 13.29 21.45 0.28 -53.41 16 18 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 19 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.11 -2.06 4.66 30.69 0.14 -1.92 16 23 C 0.12 1.64 6.45 86.38 0.56 2.20 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 26 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 1.69 7.00 -2.39 -0.02 1.68 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.58 7.53 -2.39 -0.02 1.56 16 31 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.41 10.97 7.87 -92.71 -0.73 10.24 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.09 1.67 8.07 -2.39 -0.02 1.65 16 39 H 0.05 1.22 8.13 -2.38 -0.02 1.20 16 40 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.33 6.93 -2.38 -0.02 1.31 16 Total: -1.00 -74.35 341.11 2.65 -71.69 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.30 Total: 12.86 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 5.64 Total: 11.31 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -5.06 Total: -92.76 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -0.25 Total: -48.49 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -74.35 2.65 -71.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832022552.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.793 kcal (2) G-P(sol) polarization free energy of solvation -74.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds