Wall clock time and date at job start Tue Mar 31 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 C 1.52997 * 109.47343 * 240.00459 * 2 1 3 5 5 O 1.45196 * 109.47063 * 119.99893 * 2 1 3 6 6 C 1.34634 * 117.00056 * 60.00619 * 5 2 1 7 7 O 1.21508 * 119.99852 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99995 * 179.97438 * 6 5 2 9 9 C 1.47585 * 134.49325 * 0.02562 * 8 6 5 10 10 C 1.53949 * 86.11483 * 204.63880 * 9 8 6 11 11 C 1.47582 * 134.49130 * 179.97438 * 8 6 5 12 12 H 1.09001 * 113.77062 * 41.06950 * 11 8 6 13 13 C 1.53002 * 113.87605 * 269.67712 * 11 8 6 14 14 N 1.46500 * 109.46792 * 76.44170 * 13 11 8 15 15 C 1.34778 * 119.99851 * 180.02562 * 14 13 11 16 16 O 1.21685 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.46370 * 120.00090 * 180.02562 * 15 14 13 18 18 H 1.08002 * 119.99829 * 353.93818 * 17 15 14 19 19 C 1.40053 * 120.00145 * 173.94084 * 17 15 14 20 20 N 1.30665 * 119.99702 * 6.14241 * 19 17 15 21 21 Si 1.86797 * 119.99955 * 186.15020 * 19 17 15 22 22 H 1.48496 * 109.47358 * 94.98214 * 21 19 17 23 23 H 1.48500 * 109.47063 * 214.98199 * 21 19 17 24 24 H 1.48508 * 109.47054 * 334.97776 * 21 19 17 25 25 H 1.08996 * 109.47561 * 299.99914 * 1 2 3 26 26 H 1.09003 * 109.47274 * 60.00073 * 1 2 3 27 27 H 1.09004 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47400 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47534 * 300.00348 * 3 2 1 30 30 H 1.09005 * 109.47162 * 59.99798 * 3 2 1 31 31 H 1.09004 * 109.46608 * 299.99915 * 4 2 1 32 32 H 1.09003 * 109.47370 * 59.99526 * 4 2 1 33 33 H 1.08994 * 109.47447 * 179.97438 * 4 2 1 34 34 H 1.08995 * 113.77060 * 90.33645 * 9 8 6 35 35 H 1.09000 * 113.86789 * 318.94712 * 9 8 6 36 36 H 1.09004 * 113.73713 * 222.04987 * 10 9 8 37 37 H 1.08999 * 113.84040 * 90.74929 * 10 9 8 38 38 H 1.08993 * 109.47158 * 196.44538 * 13 11 8 39 39 H 1.08997 * 109.46748 * 316.44840 * 13 11 8 40 40 H 0.97000 * 120.00422 * 0.02562 * 14 13 11 41 41 H 0.97000 * 119.99598 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5039 8 7 2.0681 -2.6656 2.4166 9 6 2.9009 -2.3475 3.5928 10 6 3.1948 -3.8571 3.6621 11 6 1.8728 -4.0477 2.8959 12 1 1.9264 -4.7980 2.1071 13 6 0.6534 -4.2218 3.8036 14 7 -0.5645 -4.2269 2.9895 15 6 -1.7684 -4.3681 3.5788 16 8 -1.8436 -4.4910 4.7871 17 6 -2.9853 -4.3737 2.7654 18 1 -2.9282 -4.1672 1.7069 19 6 -4.2236 -4.6468 3.3598 20 7 -4.3109 -4.7779 4.6569 21 14 -5.7504 -4.8239 2.2982 22 1 -5.9785 -6.2595 1.9947 23 1 -6.9249 -4.2791 3.0255 24 1 -5.5616 -4.0737 1.0305 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7207 -1.2495 34 1 2.3336 -1.9708 4.4438 35 1 3.7759 -1.7398 3.3622 36 1 3.1772 -4.2615 4.6742 37 1 4.0769 -4.1606 3.0984 38 1 0.7339 -5.1655 4.3430 39 1 0.6106 -3.3983 4.5163 40 1 -0.5046 -4.1285 2.0263 41 1 -5.1687 -4.9667 5.0686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832133602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:24 Heat of formation + Delta-G solvation = -87.387563 kcal Electronic energy + Delta-G solvation = -23383.981263 eV Core-core repulsion = 19879.380071 eV Total energy + Delta-G solvation = -3504.601192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75194 -39.35270 -36.98305 -36.32353 -33.99089 -33.04213 -32.13754 -29.76776 -27.86921 -27.44781 -27.32098 -25.87566 -23.59656 -22.97431 -20.40000 -19.62057 -18.79557 -17.81421 -16.91864 -16.64034 -16.22106 -15.42534 -15.22892 -15.11195 -14.40126 -14.17923 -13.92490 -13.68328 -13.45598 -12.87056 -12.64169 -12.47486 -12.35759 -12.16751 -11.98747 -11.90546 -11.81951 -11.60418 -11.44369 -11.27095 -11.15714 -11.05235 -10.91833 -10.67909 -10.37063 -10.27852 -10.15736 -9.79773 -8.79431 -8.63668 -7.56683 -7.44764 -6.14294 -4.56637 2.09194 3.09102 3.18153 3.25057 3.29796 3.78453 4.14521 4.29653 4.63791 4.71566 4.74638 4.78900 4.90409 5.01789 5.19026 5.28522 5.33786 5.39646 5.41220 5.51730 5.57565 5.63948 5.70710 5.73520 5.77539 5.86855 5.90905 5.97067 6.03274 6.28818 6.37926 6.43287 6.47037 6.65101 7.50526 7.82535 8.02373 8.15877 8.41297 8.54214 9.09055 9.60015 10.65164 10.83854 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.005059 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.983166 B = 5533.850906 C = 6869.105602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.365 6.365 6 C 0.673 3.327 7 O -0.561 6.561 8 N -0.626 5.626 9 C 0.107 3.893 10 C -0.145 4.145 11 C 0.150 3.850 12 H 0.096 0.904 13 C 0.129 3.871 14 N -0.765 5.765 15 C 0.556 3.444 16 O -0.585 6.585 17 C -0.543 4.543 18 H 0.067 0.933 19 C 0.089 3.911 20 N -0.770 5.770 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.265 1.265 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.387 0.613 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.203 8.162 -7.298 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.429 3.571 7 O -0.449 6.449 8 N -0.369 5.369 9 C -0.016 4.016 10 C -0.183 4.183 11 C 0.048 3.952 12 H 0.114 0.886 13 C 0.003 3.997 14 N -0.421 5.421 15 C 0.360 3.640 16 O -0.468 6.468 17 C -0.580 4.580 18 H 0.086 0.914 19 C -0.131 4.131 20 N -0.399 5.399 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.220 0.780 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.733 8.069 -6.737 18.922 hybrid contribution -0.845 0.122 -1.051 1.354 sum 14.888 8.190 -7.788 18.692 Atomic orbital electron populations 1.22520 0.93705 1.05639 1.02320 1.22028 0.94607 0.91268 0.82185 1.21842 1.01864 0.92863 1.03029 1.22508 1.01115 1.03760 0.96511 1.86279 1.71843 1.23694 1.46229 1.17554 0.77796 0.79988 0.81767 1.90905 1.40400 1.70259 1.43357 1.48919 1.53648 1.14155 1.20179 1.23189 0.93790 0.97038 0.87539 1.23515 0.97020 0.95834 1.01975 1.23075 0.95096 0.81782 0.95261 0.88643 1.21108 0.84082 1.01330 0.93223 1.46116 1.05028 1.81546 1.09443 1.18201 0.81793 0.76273 0.87722 1.90582 1.86356 1.54874 1.14983 1.20899 0.90449 1.51154 0.95542 0.91433 1.25691 0.99795 0.92858 0.94736 1.70033 1.25175 1.34639 1.10005 0.86380 0.80914 0.78963 0.80646 1.19774 1.20484 1.18873 0.92111 0.91377 0.88932 0.91759 0.90290 0.91534 0.89228 0.91340 0.92518 0.89423 0.90012 0.88752 0.88660 0.91435 0.92787 0.78023 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 8.37 37.16 0.31 -2.28 16 2 C 0.14 1.75 1.13 -90.62 -0.10 1.65 16 3 C -0.14 -1.32 8.85 37.16 0.33 -1.00 16 4 C -0.18 -2.18 8.37 37.16 0.31 -1.87 16 5 O -0.37 -5.57 9.87 -40.31 -0.40 -5.97 16 6 C 0.67 11.47 8.22 54.05 0.44 11.92 16 7 O -0.56 -10.78 12.34 -19.28 -0.24 -11.02 16 8 N -0.63 -9.40 3.42 -176.95 -0.61 -10.00 16 9 C 0.11 1.18 8.51 -2.97 -0.03 1.16 16 10 C -0.14 -1.40 7.88 -25.78 -0.20 -1.60 16 11 C 0.15 2.15 4.40 -66.84 -0.29 1.85 16 12 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 13 C 0.13 2.45 5.62 -4.04 -0.02 2.42 16 14 N -0.76 -18.28 5.55 -61.73 -0.34 -18.62 16 15 C 0.56 16.51 7.74 -12.99 -0.10 16.41 16 16 O -0.58 -19.32 15.04 5.20 0.08 -19.24 16 17 C -0.54 -16.18 9.53 -35.63 -0.34 -16.52 16 18 H 0.07 1.91 7.85 -52.49 -0.41 1.49 16 19 C 0.09 2.56 5.49 -17.37 -0.10 2.47 16 20 N -0.77 -23.67 11.85 55.55 0.66 -23.01 16 21 Si 0.91 20.97 29.56 -169.99 -5.03 15.95 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.31 5.88 -51.93 -0.31 1.01 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.98 7.73 -51.93 -0.40 0.58 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 1.08 7.45 -51.93 -0.39 0.69 16 40 H 0.39 9.00 8.19 -40.82 -0.33 8.67 16 41 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -37.08 342.04 -6.86 -43.93 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.35 Total: 8.22 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 0.21 Total: 14.62 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.29 Total: -51.64 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.56 Total: -36.23 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.08 -6.86 -43.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832133602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.456 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds