Wall clock time and date at job start Tue Mar 31 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46825 * 2 1 4 4 C 1.52997 * 109.47343 * 240.00459 * 2 1 3 5 5 O 1.45196 * 109.47063 * 119.99893 * 2 1 3 6 6 C 1.34634 * 117.00056 * 60.00619 * 5 2 1 7 7 O 1.21508 * 119.99852 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99995 * 179.97438 * 6 5 2 9 9 C 1.47585 * 134.49325 * 0.02562 * 8 6 5 10 10 C 1.53949 * 86.11483 * 204.63880 * 9 8 6 11 11 C 1.47582 * 134.49130 * 179.97438 * 8 6 5 12 12 H 1.09001 * 113.77062 * 41.06950 * 11 8 6 13 13 C 1.53002 * 113.87605 * 269.67712 * 11 8 6 14 14 N 1.46500 * 109.46792 * 76.44170 * 13 11 8 15 15 C 1.34778 * 119.99851 * 180.02562 * 14 13 11 16 16 O 1.21685 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.46370 * 120.00090 * 180.02562 * 15 14 13 18 18 H 1.08002 * 119.99829 * 353.93818 * 17 15 14 19 19 C 1.40053 * 120.00145 * 173.94084 * 17 15 14 20 20 N 1.30665 * 119.99702 * 6.14241 * 19 17 15 21 21 Si 1.86797 * 119.99955 * 186.15020 * 19 17 15 22 22 H 1.48496 * 109.47358 * 94.98214 * 21 19 17 23 23 H 1.48500 * 109.47063 * 214.98199 * 21 19 17 24 24 H 1.48508 * 109.47054 * 334.97776 * 21 19 17 25 25 H 1.08996 * 109.47561 * 299.99914 * 1 2 3 26 26 H 1.09003 * 109.47274 * 60.00073 * 1 2 3 27 27 H 1.09004 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47400 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47534 * 300.00348 * 3 2 1 30 30 H 1.09005 * 109.47162 * 59.99798 * 3 2 1 31 31 H 1.09004 * 109.46608 * 299.99915 * 4 2 1 32 32 H 1.09003 * 109.47370 * 59.99526 * 4 2 1 33 33 H 1.08994 * 109.47447 * 179.97438 * 4 2 1 34 34 H 1.08995 * 113.77060 * 90.33645 * 9 8 6 35 35 H 1.09000 * 113.86789 * 318.94712 * 9 8 6 36 36 H 1.09004 * 113.73713 * 222.04987 * 10 9 8 37 37 H 1.08999 * 113.84040 * 90.74929 * 10 9 8 38 38 H 1.08993 * 109.47158 * 196.44538 * 13 11 8 39 39 H 1.08997 * 109.46748 * 316.44840 * 13 11 8 40 40 H 0.97000 * 120.00422 * 0.02562 * 14 13 11 41 41 H 0.97000 * 119.99598 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5039 8 7 2.0681 -2.6656 2.4166 9 6 2.9009 -2.3475 3.5928 10 6 3.1948 -3.8571 3.6621 11 6 1.8728 -4.0477 2.8959 12 1 1.9264 -4.7980 2.1071 13 6 0.6534 -4.2218 3.8036 14 7 -0.5645 -4.2269 2.9895 15 6 -1.7684 -4.3681 3.5788 16 8 -1.8436 -4.4910 4.7871 17 6 -2.9853 -4.3737 2.7654 18 1 -2.9282 -4.1672 1.7069 19 6 -4.2236 -4.6468 3.3598 20 7 -4.3109 -4.7779 4.6569 21 14 -5.7504 -4.8239 2.2982 22 1 -5.9785 -6.2595 1.9947 23 1 -6.9249 -4.2791 3.0255 24 1 -5.5616 -4.0737 1.0305 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9565 -0.8899 30 1 1.6765 1.9564 0.8900 31 1 1.6767 -1.7488 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7207 -1.2495 34 1 2.3336 -1.9708 4.4438 35 1 3.7759 -1.7398 3.3622 36 1 3.1772 -4.2615 4.6742 37 1 4.0769 -4.1606 3.0984 38 1 0.7339 -5.1655 4.3430 39 1 0.6106 -3.3983 4.5163 40 1 -0.5046 -4.1285 2.0263 41 1 -5.1687 -4.9667 5.0686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832133602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:23 Heat of formation + Delta-G solvation = -115.280121 kcal Electronic energy + Delta-G solvation = -23385.190775 eV Core-core repulsion = 19879.380071 eV Total energy + Delta-G solvation = -3505.810704 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.92731 -40.51657 -39.11507 -37.55497 -35.23938 -34.92336 -34.32659 -30.98001 -29.53367 -28.37826 -28.29765 -27.74693 -24.97304 -24.04703 -21.79953 -21.43105 -20.05384 -19.37922 -18.48959 -17.79598 -17.56737 -17.36403 -16.63279 -16.44052 -15.95865 -15.62119 -15.32472 -15.08382 -14.88215 -14.37265 -14.12160 -13.56229 -13.41073 -13.38584 -13.25432 -13.13647 -13.02766 -12.90399 -12.85861 -12.77911 -12.65437 -12.57571 -12.28840 -12.09210 -12.03732 -11.84523 -11.38165 -11.01935 -10.96757 -9.95701 -9.79117 -9.52300 -8.34647 -6.89885 0.96867 1.35307 1.36733 1.52609 1.82204 2.21560 2.41942 2.72297 3.05446 3.53430 3.55553 3.75470 3.77505 3.81363 3.94193 4.07828 4.14837 4.22381 4.48228 4.51924 4.59495 4.61657 4.72023 4.74418 4.81984 4.86799 4.87285 4.97703 5.00264 5.11655 5.23275 5.27088 5.28349 5.34779 5.51009 5.82808 6.14383 6.23553 6.65981 6.82281 7.28811 7.44372 8.42821 8.61897 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.005059 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.983166 B = 5533.850906 C = 6869.105602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.124 3.876 3 C -0.132 4.132 4 C -0.175 4.175 5 O -0.367 6.367 6 C 0.661 3.339 7 O -0.592 6.592 8 N -0.634 5.634 9 C 0.103 3.897 10 C -0.114 4.114 11 C 0.144 3.856 12 H 0.096 0.904 13 C 0.128 3.872 14 N -0.757 5.757 15 C 0.540 3.460 16 O -0.628 6.628 17 C -0.578 4.578 18 H 0.073 0.927 19 C 0.033 3.967 20 N -0.817 5.817 21 Si 0.996 3.004 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.256 1.256 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.390 0.610 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.332 8.981 -8.584 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.189 4.189 4 C -0.232 4.232 5 O -0.282 6.282 6 C 0.417 3.583 7 O -0.483 6.483 8 N -0.376 5.376 9 C -0.018 4.018 10 C -0.152 4.152 11 C 0.042 3.958 12 H 0.114 0.886 13 C 0.003 3.997 14 N -0.411 5.411 15 C 0.344 3.656 16 O -0.516 6.516 17 C -0.615 4.615 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.447 5.447 21 Si 0.815 3.185 22 H -0.183 1.183 23 H -0.190 1.190 24 H -0.180 1.180 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.223 0.777 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.935 8.906 -8.026 20.749 hybrid contribution -1.150 -0.095 -0.643 1.321 sum 15.785 8.811 -8.669 20.049 Atomic orbital electron populations 1.22483 0.95087 1.03267 1.03106 1.22414 0.93778 0.93117 0.81908 1.21860 1.02618 0.90230 1.04151 1.22434 1.01750 1.02013 0.97033 1.86290 1.71753 1.22783 1.47404 1.17927 0.77661 0.80513 0.82176 1.90886 1.41748 1.70986 1.44722 1.49251 1.53454 1.14382 1.20563 1.23458 0.93887 0.98703 0.85758 1.23497 0.94727 0.94273 1.02654 1.23072 0.95449 0.81969 0.95312 0.88559 1.21296 0.84040 1.00840 0.93564 1.45870 1.05458 1.79990 1.09805 1.18501 0.83638 0.76117 0.87328 1.90529 1.87450 1.57071 1.16559 1.21372 0.91764 1.52294 0.96033 0.90842 1.26907 1.03626 0.91436 0.96270 1.70163 1.26911 1.35131 1.12460 0.85046 0.75456 0.79656 0.78360 1.18291 1.19044 1.17991 0.93108 0.88779 0.92759 0.90536 0.87812 0.91771 0.92370 0.89037 0.91343 0.89934 0.87406 0.86747 0.85716 0.91441 0.93990 0.77723 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.15 8.37 71.98 0.60 -4.55 16 2 C 0.12 3.08 1.13 -10.79 -0.01 3.07 16 3 C -0.13 -2.19 8.85 71.98 0.64 -1.55 16 4 C -0.18 -4.01 8.37 71.98 0.60 -3.40 16 5 O -0.37 -11.06 9.87 -55.43 -0.55 -11.61 16 6 C 0.66 22.79 8.22 129.79 1.07 23.86 16 7 O -0.59 -23.68 12.34 19.82 0.24 -23.44 16 8 N -0.63 -18.70 3.42 -944.16 -3.23 -21.92 16 9 C 0.10 2.07 8.51 86.48 0.74 2.81 16 10 C -0.11 -1.86 7.88 31.27 0.25 -1.62 16 11 C 0.14 4.05 4.40 45.11 0.20 4.25 16 12 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 13 C 0.13 4.97 5.62 86.38 0.49 5.45 16 14 N -0.76 -37.64 5.55 -467.42 -2.59 -40.23 16 15 C 0.54 33.41 7.74 86.36 0.67 34.07 16 16 O -0.63 -43.35 15.04 -4.30 -0.06 -43.42 16 17 C -0.58 -35.46 9.53 24.83 0.24 -35.22 16 18 H 0.07 4.26 7.85 -2.91 -0.02 4.24 16 19 C 0.03 1.94 5.49 85.31 0.47 2.41 16 20 N -0.82 -51.48 11.85 21.84 0.26 -51.23 16 21 Si 1.00 43.31 29.56 68.60 2.03 45.34 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.97 5.88 -2.39 -0.01 1.96 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 31 H 0.06 1.73 5.88 -2.39 -0.01 1.72 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.75 7.73 -2.39 -0.02 1.73 16 35 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.11 1.50 8.10 -2.38 -0.02 1.48 16 37 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.04 1.73 7.45 -2.39 -0.02 1.71 16 40 H 0.39 18.92 8.19 -92.71 -0.76 18.16 16 41 H 0.28 15.63 8.29 -92.71 -0.77 14.86 16 Total: -1.00 -85.32 342.04 2.31 -83.02 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.27 Total: 33.91 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 5.94 Total: 29.58 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -5.57 Total: -113.38 kcal Atomic # 8 Polarization: -78.09 SS G_CDS: -0.37 Total: -78.46 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -85.32 2.31 -83.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832133602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.262 kcal (2) G-P(sol) polarization free energy of solvation -85.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds