Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 16 14 19 19 O 1.45198 * 109.47327 * 65.00267 * 18 17 16 20 20 C 1.34227 * 117.00115 * 180.02562 * 19 18 17 21 21 O 1.20829 * 119.99871 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99783 * 179.97438 * 20 19 18 23 23 C 1.53005 * 117.49829 * 248.74460 * 22 20 19 24 24 C 1.53008 * 117.49588 * 180.08629 * 22 20 19 25 25 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.00897 * 111.00316 * 176.04452 * 13 11 10 31 31 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 32 32 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 33 33 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 34 34 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 35 35 H 1.08997 * 109.47215 * 185.00679 * 18 17 16 36 36 H 1.09007 * 109.47022 * 305.00201 * 18 17 16 37 37 H 1.08996 * 115.54961 * 34.41947 * 22 20 19 38 38 H 1.08997 * 117.49969 * 0.02562 * 23 22 20 39 39 H 1.09002 * 117.49459 * 145.02661 * 23 22 20 40 40 H 1.08998 * 117.49511 * 214.97943 * 24 22 20 41 41 H 1.09001 * 117.49676 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9142 -2.0465 0.8452 13 7 6.0423 -2.0518 -1.2517 14 6 6.0539 -4.0517 0.1285 15 8 6.4288 -4.6514 -0.8568 16 7 6.0866 -4.6512 1.3351 17 6 6.5753 -6.0268 1.4567 18 6 6.5073 -6.4647 2.9212 19 8 5.1205 -6.5106 3.3488 20 6 4.8861 -6.8790 4.6181 21 8 5.8091 -7.1544 5.3475 22 6 3.4716 -6.9490 5.1332 23 6 3.0487 -5.9155 6.1792 24 6 3.2703 -7.3736 6.5894 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1509 -0.8875 29 1 3.6580 -3.1497 0.8925 30 1 7.0488 -1.9811 -1.2485 31 1 5.7193 -2.5811 -2.0477 32 1 5.7864 -4.1716 2.1231 33 1 5.9551 -6.6876 0.8512 34 1 7.6072 -6.0778 1.1094 35 1 6.9528 -7.4540 3.0257 36 1 7.0547 -5.7527 3.5390 37 1 2.7224 -7.2669 4.4082 38 1 3.7934 -5.1847 6.4944 39 1 2.0211 -5.5538 6.1425 40 1 2.3885 -7.9704 6.8223 41 1 4.1610 -7.6026 7.1745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832182063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = -110.235549 kcal Electronic energy + Delta-G solvation = -22058.802335 eV Core-core repulsion = 18553.210380 eV Total energy + Delta-G solvation = -3505.591955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92996 -39.83134 -37.75530 -36.26060 -35.46249 -34.84206 -32.75727 -30.54493 -30.32757 -26.84915 -25.69011 -23.84568 -22.82949 -22.35495 -20.75196 -20.53113 -19.90984 -18.32217 -17.44151 -16.99150 -16.85207 -16.61383 -15.94502 -15.59275 -15.18441 -14.96924 -14.37454 -14.10374 -14.05142 -13.48435 -13.35680 -12.98419 -12.77040 -12.59268 -12.36463 -12.05785 -11.95630 -11.70242 -11.09591 -11.07129 -11.00334 -10.97859 -10.87028 -10.72985 -10.38483 -10.00108 -9.71134 -9.59518 -9.19194 -9.10673 -8.51537 -8.40058 -5.99017 -3.96441 1.77028 2.21355 2.67996 3.14578 3.37726 3.40523 3.44231 3.49594 4.20158 4.32129 4.41827 4.45679 4.51660 4.65345 4.72610 4.76930 4.90442 5.00881 5.24167 5.27917 5.35447 5.39989 5.43350 5.51168 5.56590 5.68481 5.70832 6.06015 6.27752 6.33339 6.48807 6.88739 7.23155 7.38930 7.43365 7.46876 7.58093 7.66126 7.86935 8.20825 8.58786 9.05931 9.64144 11.14499 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004023 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.614636 B = 6959.127436 C = 8785.922260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.066 3.934 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.069 0.931 9 C -0.004 4.004 10 C -0.087 4.087 11 C 0.075 3.925 12 H 0.098 0.902 13 N -0.811 5.811 14 C 0.485 3.515 15 O -0.553 6.553 16 N -0.728 5.728 17 C 0.120 3.880 18 C 0.055 3.945 19 O -0.346 6.346 20 C 0.495 3.505 21 O -0.512 6.512 22 C -0.174 4.174 23 C -0.145 4.145 24 C -0.147 4.147 25 H 0.262 0.738 26 H 0.012 0.988 27 H 0.029 0.971 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.335 0.665 31 H 0.350 0.650 32 H 0.405 0.595 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.999 -13.781 10.976 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.042 4.042 10 C -0.125 4.125 11 C -0.041 4.041 12 H 0.116 0.884 13 N -0.339 5.339 14 C 0.271 3.729 15 O -0.431 6.431 16 N -0.382 5.382 17 C -0.004 4.004 18 C -0.019 4.019 19 O -0.262 6.262 20 C 0.339 3.661 21 O -0.400 6.400 22 C -0.193 4.193 23 C -0.182 4.182 24 C -0.184 4.184 25 H 0.071 0.929 26 H 0.031 0.969 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.147 0.853 31 H 0.164 0.836 32 H 0.240 0.760 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.156 0.844 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.008 -13.520 10.644 20.983 hybrid contribution 0.854 0.024 0.202 0.878 sum 12.862 -13.496 10.846 21.568 Atomic orbital electron populations 1.69925 1.06350 1.26792 1.51544 1.25011 0.94688 0.99190 0.94602 0.86738 0.80242 0.83444 0.78583 1.20293 1.21733 1.18919 1.21182 0.89747 0.94336 1.50579 0.91288 1.19484 0.96359 0.91198 0.97136 1.21469 0.87905 1.01534 1.01633 1.21862 0.99447 0.87702 0.95057 0.88423 1.59030 1.15340 1.56098 1.03443 1.22649 0.76801 0.91056 0.82426 1.90657 1.48605 1.66696 1.37092 1.46113 1.66736 1.14621 1.10709 1.21396 1.01003 0.84409 0.93605 1.23375 0.80036 1.03162 0.95331 1.86567 1.30816 1.79035 1.29830 1.22636 0.91167 0.72552 0.79751 1.90663 1.46009 1.45691 1.57630 1.21748 0.92727 1.10115 0.94716 1.23084 1.03894 0.92641 0.98564 1.23111 1.04346 0.97885 0.93091 0.92861 0.96935 0.95255 0.92217 0.92069 0.85341 0.83577 0.75979 0.90225 0.89276 0.89455 0.90267 0.84360 0.87900 0.86707 0.87179 0.87339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.93 27.47 -169.99 -4.67 17.26 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 8 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 9 C 0.00 -0.10 3.93 -27.89 -0.11 -0.21 16 10 C -0.09 -1.67 4.78 -26.73 -0.13 -1.80 16 11 C 0.08 1.17 3.15 -68.86 -0.22 0.95 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 13 N -0.81 -12.54 8.44 -5.66 -0.05 -12.59 16 14 C 0.49 7.16 7.07 -10.99 -0.08 7.08 16 15 O -0.55 -9.66 16.25 5.55 0.09 -9.57 16 16 N -0.73 -8.53 5.51 -60.30 -0.33 -8.86 16 17 C 0.12 1.19 6.07 -4.04 -0.02 1.17 16 18 C 0.06 0.49 5.60 37.16 0.21 0.69 16 19 O -0.35 -3.73 10.17 -39.25 -0.40 -4.13 16 20 C 0.50 5.39 7.74 36.01 0.28 5.66 16 21 O -0.51 -6.58 16.01 -18.75 -0.30 -6.88 16 22 C -0.17 -1.49 6.30 -91.76 -0.58 -2.07 16 23 C -0.14 -1.09 10.24 -26.69 -0.27 -1.36 16 24 C -0.15 -1.04 10.05 -26.69 -0.27 -1.31 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 27 H 0.03 0.71 7.18 -51.93 -0.37 0.33 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.33 4.42 9.06 -39.29 -0.36 4.07 16 31 H 0.35 5.56 8.58 -39.29 -0.34 5.22 16 32 H 0.41 4.20 8.47 -40.82 -0.35 3.86 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 37 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -34.69 352.61 -7.61 -42.30 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.42 Total: 8.86 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.62 Total: -4.46 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.39 Total: -48.71 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.61 Total: -20.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.69 -7.61 -42.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832182063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.932 kcal (2) G-P(sol) polarization free energy of solvation -34.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds