Wall clock time and date at job start Tue Mar 31 2020 05:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.47170 * 54.99895 * 11 10 9 13 13 N 1.46901 * 109.47143 * 294.99574 * 11 10 9 14 14 C 1.50700 * 109.46738 * 175.00110 * 11 10 9 15 15 O 1.21283 * 120.00142 * 100.00354 * 14 11 10 16 16 N 1.34775 * 120.00303 * 279.99439 * 14 11 10 17 17 C 1.46496 * 120.00555 * 180.02562 * 16 14 11 18 18 C 1.52998 * 109.47269 * 180.02562 * 17 16 14 19 19 O 1.45198 * 109.47327 * 65.00267 * 18 17 16 20 20 C 1.34227 * 117.00115 * 180.02562 * 19 18 17 21 21 O 1.20829 * 119.99871 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.99783 * 179.97438 * 20 19 18 23 23 C 1.53005 * 117.49829 * 248.74460 * 22 20 19 24 24 C 1.53008 * 117.49588 * 180.08629 * 22 20 19 25 25 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 30 30 H 1.00897 * 111.00316 * 176.04452 * 13 11 10 31 31 H 1.00902 * 111.00138 * 300.00948 * 13 11 10 32 32 H 0.97005 * 119.99246 * 0.02562 * 16 14 11 33 33 H 1.08992 * 109.47266 * 300.00471 * 17 16 14 34 34 H 1.09001 * 109.46731 * 60.00326 * 17 16 14 35 35 H 1.08997 * 109.47215 * 185.00679 * 18 17 16 36 36 H 1.09007 * 109.47022 * 305.00201 * 18 17 16 37 37 H 1.08996 * 115.54961 * 34.41947 * 22 20 19 38 38 H 1.08997 * 117.49969 * 0.02562 * 23 22 20 39 39 H 1.09002 * 117.49459 * 145.02661 * 23 22 20 40 40 H 1.08998 * 117.49511 * 214.97943 * 24 22 20 41 41 H 1.09001 * 117.49676 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 6 5.5517 -2.6364 0.0035 12 1 5.9142 -2.0465 0.8452 13 7 6.0423 -2.0518 -1.2517 14 6 6.0539 -4.0517 0.1285 15 8 6.4288 -4.6514 -0.8568 16 7 6.0866 -4.6512 1.3351 17 6 6.5753 -6.0268 1.4567 18 6 6.5073 -6.4647 2.9212 19 8 5.1205 -6.5106 3.3488 20 6 4.8861 -6.8790 4.6181 21 8 5.8091 -7.1544 5.3475 22 6 3.4716 -6.9490 5.1332 23 6 3.0487 -5.9155 6.1792 24 6 3.2703 -7.3736 6.5894 25 1 -0.4849 0.8400 -0.0004 26 1 3.8746 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8888 28 1 3.6587 -3.1509 -0.8875 29 1 3.6580 -3.1497 0.8925 30 1 7.0488 -1.9811 -1.2485 31 1 5.7193 -2.5811 -2.0477 32 1 5.7864 -4.1716 2.1231 33 1 5.9551 -6.6876 0.8512 34 1 7.6072 -6.0778 1.1094 35 1 6.9528 -7.4540 3.0257 36 1 7.0547 -5.7527 3.5390 37 1 2.7224 -7.2669 4.4082 38 1 3.7934 -5.1847 6.4944 39 1 2.0211 -5.5538 6.1425 40 1 2.3885 -7.9704 6.8223 41 1 4.1610 -7.6026 7.1745 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832182063.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:09 Heat of formation + Delta-G solvation = -135.906910 kcal Electronic energy + Delta-G solvation = -22059.915528 eV Core-core repulsion = 18553.210380 eV Total energy + Delta-G solvation = -3506.705149 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75664 -40.98949 -38.51168 -37.05755 -36.84081 -35.90941 -34.76500 -32.26871 -31.29685 -28.37419 -26.60337 -25.24358 -23.42708 -23.33126 -22.15047 -21.47640 -21.23716 -19.09659 -19.00003 -18.29206 -17.89652 -17.69598 -17.06781 -16.74608 -16.20120 -16.01411 -15.81387 -15.44745 -15.05175 -14.82592 -14.62715 -14.20892 -13.95005 -13.89430 -13.52154 -13.48574 -12.88683 -12.79666 -12.50645 -12.50284 -11.96021 -11.85086 -11.77961 -11.74799 -11.60281 -11.59451 -11.48282 -11.26843 -11.12164 -10.69162 -10.20892 -9.66443 -8.22962 -6.25953 0.96644 1.43071 1.44126 1.46121 1.52113 1.56840 2.14139 2.43067 2.79060 3.13825 3.45842 3.57176 3.66972 3.72117 3.84340 3.88304 3.95491 4.09309 4.11463 4.22868 4.28896 4.53190 4.66035 4.70769 4.73316 4.86367 4.87528 4.96914 5.15823 5.16605 5.25588 5.33447 5.52801 5.67637 5.74802 6.07569 6.34924 6.40512 6.53890 6.62067 6.82620 7.10520 7.38539 8.93923 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012471 B = 0.004023 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.614636 B = 6959.127436 C = 8785.922260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.241 1.241 7 C -0.530 4.530 8 H 0.029 0.971 9 C 0.002 3.998 10 C -0.079 4.079 11 C 0.084 3.916 12 H 0.120 0.880 13 N -0.819 5.819 14 C 0.489 3.511 15 O -0.581 6.581 16 N -0.717 5.717 17 C 0.122 3.878 18 C 0.057 3.943 19 O -0.357 6.357 20 C 0.494 3.506 21 O -0.536 6.536 22 C -0.190 4.190 23 C -0.144 4.144 24 C -0.137 4.137 25 H 0.264 0.736 26 H 0.024 0.976 27 H 0.027 0.973 28 H 0.039 0.961 29 H 0.065 0.935 30 H 0.349 0.651 31 H 0.346 0.654 32 H 0.414 0.586 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.687 -13.258 11.941 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.165 1.165 7 C -0.568 4.568 8 H 0.047 0.953 9 C -0.035 4.035 10 C -0.117 4.117 11 C -0.032 4.032 12 H 0.138 0.862 13 N -0.348 5.348 14 C 0.274 3.726 15 O -0.461 6.461 16 N -0.369 5.369 17 C -0.001 4.001 18 C -0.016 4.016 19 O -0.273 6.273 20 C 0.340 3.660 21 O -0.427 6.427 22 C -0.209 4.209 23 C -0.181 4.181 24 C -0.174 4.174 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.163 0.837 31 H 0.160 0.840 32 H 0.250 0.750 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.166 0.834 38 H 0.115 0.885 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.716 -13.013 11.639 22.202 hybrid contribution 0.272 -0.231 -0.093 0.369 sum 13.988 -13.244 11.546 22.458 Atomic orbital electron populations 1.70080 1.08365 1.28001 1.53163 1.25988 0.95531 1.03484 0.94240 0.85624 0.79614 0.78168 0.78968 1.19818 1.21328 1.16463 1.21563 0.92506 0.92872 1.49906 0.95306 1.19371 0.92899 0.93967 0.97268 1.21253 0.90818 0.98662 1.00983 1.21675 0.96634 0.88876 0.96028 0.86187 1.59013 1.16563 1.56008 1.03202 1.22381 0.76767 0.90646 0.82819 1.90652 1.50176 1.67124 1.38195 1.46049 1.65534 1.15261 1.10094 1.21484 1.01433 0.82972 0.94238 1.23443 0.79465 1.04187 0.94533 1.86561 1.31892 1.78939 1.29950 1.23056 0.91812 0.71735 0.79437 1.90646 1.46918 1.46965 1.58124 1.21914 0.91721 1.11552 0.95697 1.23174 1.04376 0.92785 0.97776 1.23194 1.04776 0.97814 0.91591 0.92680 0.95802 0.95469 0.94169 0.91639 0.83732 0.84041 0.75010 0.91355 0.87859 0.88134 0.89332 0.83388 0.88459 0.85450 0.84960 0.88269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 44.48 27.47 68.60 1.88 46.37 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.53 -30.44 9.66 25.60 0.25 -30.19 16 8 H 0.03 1.82 7.99 -2.91 -0.02 1.80 16 9 C 0.00 0.11 3.93 29.85 0.12 0.23 16 10 C -0.08 -2.95 4.78 30.59 0.15 -2.80 16 11 C 0.08 2.42 3.15 44.17 0.14 2.56 16 12 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 13 N -0.82 -23.75 8.44 -171.81 -1.45 -25.20 16 14 C 0.49 13.59 7.07 87.66 0.62 14.21 16 15 O -0.58 -19.60 16.25 -3.04 -0.05 -19.64 16 16 N -0.72 -15.40 5.51 -463.08 -2.55 -17.95 16 17 C 0.12 2.22 6.07 86.38 0.52 2.75 16 18 C 0.06 0.92 5.60 71.98 0.40 1.32 16 19 O -0.36 -7.30 10.17 -51.39 -0.52 -7.82 16 20 C 0.49 10.34 7.74 71.24 0.55 10.89 16 21 O -0.54 -13.41 16.01 21.95 0.35 -13.06 16 22 C -0.19 -3.06 6.30 -11.54 -0.07 -3.13 16 23 C -0.14 -1.98 10.24 30.62 0.31 -1.67 16 24 C -0.14 -1.74 10.05 30.62 0.31 -1.43 16 25 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 26 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 27 H 0.03 1.25 7.18 -2.39 -0.02 1.24 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.35 8.41 9.06 -89.70 -0.81 7.59 16 31 H 0.35 10.62 8.58 -89.69 -0.77 9.85 16 32 H 0.41 7.63 8.47 -92.70 -0.79 6.85 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.10 1.38 8.13 -2.39 -0.02 1.36 16 36 H 0.09 1.28 8.13 -2.38 -0.02 1.26 16 37 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.10 1.47 7.67 -2.39 -0.02 1.45 16 Total: -1.00 -74.92 352.61 0.36 -74.56 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: -1.36 Total: 29.16 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 3.76 Total: -6.59 kcal Atomic # 7 Polarization: -99.27 SS G_CDS: -3.70 Total: -102.98 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.22 Total: -40.52 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Total: -74.92 0.36 -74.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832182063.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.346 kcal (2) G-P(sol) polarization free energy of solvation -74.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds