Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99763 * 2 1 4 4 H 1.48505 * 109.46967 * 239.99503 * 3 2 1 5 5 H 1.48492 * 109.47318 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47019 * 120.00246 * 3 2 1 7 7 C 1.37874 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99703 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47114 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47024 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47075 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00006 * 180.02562 * 12 11 10 14 14 O 1.21586 * 120.00232 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00030 * 180.02562 * 13 12 11 16 16 C 1.47426 * 125.64952 * 354.65142 * 15 13 12 17 17 C 1.55130 * 104.72375 * 155.81917 * 16 15 13 18 18 C 1.55158 * 101.48219 * 37.29911 * 17 16 15 19 19 C 1.47022 * 125.64935 * 174.96539 * 15 13 12 20 20 H 1.08995 * 109.88622 * 300.43694 * 19 15 13 21 21 C 1.53002 * 109.88195 * 61.60177 * 19 15 13 22 22 C 1.50700 * 109.47105 * 185.68992 * 21 19 15 23 23 O 1.20830 * 120.00173 * 5.47378 * 22 21 19 24 24 O 1.34230 * 120.00183 * 185.47292 * 22 21 19 25 25 H 0.97003 * 119.99924 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46886 * 60.00310 * 9 7 2 27 27 H 1.08998 * 109.47245 * 300.00255 * 9 7 2 28 28 H 1.08998 * 109.47260 * 300.00231 * 10 9 7 29 29 H 1.08996 * 109.46918 * 60.00542 * 10 9 7 30 30 H 1.08998 * 109.47013 * 300.00042 * 11 10 9 31 31 H 1.08996 * 109.47109 * 60.00319 * 11 10 9 32 32 H 0.97000 * 120.00011 * 359.97438 * 12 11 10 33 33 H 1.08999 * 110.36744 * 274.75235 * 16 15 13 34 34 H 1.09000 * 110.36077 * 37.07528 * 16 15 13 35 35 H 1.08996 * 111.19263 * 279.19346 * 17 16 15 36 36 H 1.09002 * 110.93600 * 155.29023 * 17 16 15 37 37 H 1.09004 * 110.71841 * 205.96503 * 18 17 16 38 38 H 1.09002 * 110.71987 * 82.69886 * 18 17 16 39 39 H 1.09002 * 109.47283 * 305.69119 * 21 19 15 40 40 H 1.09006 * 109.46908 * 65.69181 * 21 19 15 41 41 H 0.96697 * 117.00090 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0006 13 6 1.9831 -7.3712 -0.0015 14 8 0.7878 -7.5934 -0.0024 15 7 2.8590 -8.3956 -0.0004 16 6 4.3241 -8.2736 -0.1099 17 6 4.8775 -9.5654 0.5471 18 6 3.8327 -10.6169 0.0888 19 6 2.5111 -9.8203 0.1036 20 1 1.9776 -10.0046 1.0361 21 6 1.6420 -10.2320 -1.0864 22 6 1.1756 -11.6528 -0.9002 23 8 1.4210 -12.2395 0.1272 24 8 0.4875 -12.2667 -1.8756 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6043 -0.8905 29 1 2.8719 -3.6043 0.8895 30 1 0.8534 -5.0451 0.8886 31 1 0.8541 -5.0446 -0.8914 32 1 3.3860 -5.9233 -0.0002 33 1 4.6231 -8.2194 -1.1566 34 1 4.6728 -7.3940 0.4312 35 1 4.8942 -9.4789 1.6335 36 1 5.8683 -9.8050 0.1610 37 1 3.7893 -11.4491 0.7916 38 1 4.0581 -10.9716 -0.9170 39 1 0.7775 -9.5712 -1.1508 40 1 2.2249 -10.1583 -2.0046 41 1 0.2093 -13.1778 -1.7100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833063042.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -161.041085 kcal Electronic energy + Delta-G solvation = -22187.167473 eV Core-core repulsion = 18679.372425 eV Total energy + Delta-G solvation = -3507.795048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.80204 -40.95896 -38.82958 -37.11013 -36.90775 -35.23755 -33.58997 -32.62044 -32.09262 -28.48171 -27.87814 -25.34532 -23.98474 -22.74126 -22.30180 -21.86197 -20.50589 -19.31249 -18.79531 -18.44142 -18.09687 -17.02607 -16.94474 -16.77771 -16.46494 -16.10378 -15.54761 -15.40968 -14.78541 -14.33189 -14.25968 -14.07918 -13.93079 -13.74232 -13.56605 -13.46179 -12.94106 -12.69716 -12.58900 -12.53627 -12.39118 -12.10265 -11.92329 -11.71395 -11.68197 -11.64593 -11.56436 -11.27143 -11.11512 -10.53504 -10.25745 -9.57760 -8.18090 -6.29722 1.15940 1.41743 1.44160 1.45827 1.53770 2.01653 2.23880 2.43180 3.03697 3.15649 3.52866 3.57620 3.76835 4.09210 4.16951 4.23413 4.24385 4.31388 4.44327 4.56823 4.59391 4.67283 4.82062 4.90886 4.96340 4.99039 5.01205 5.14164 5.17714 5.31201 5.35213 5.46477 5.54663 5.58418 5.72413 5.85503 6.00462 6.23678 6.87228 6.95030 6.96772 7.39848 7.51066 8.93896 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.002689 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.467585 B =10410.064048 C =11060.057410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.150 3.850 12 N -0.727 5.727 13 C 0.713 3.287 14 O -0.634 6.634 15 N -0.632 5.632 16 C 0.089 3.911 17 C -0.121 4.121 18 C -0.118 4.118 19 C 0.165 3.835 20 H 0.058 0.942 21 C -0.128 4.128 22 C 0.495 3.505 23 O -0.541 6.541 24 O -0.514 6.514 25 H 0.263 0.737 26 H -0.007 1.007 27 H -0.009 1.009 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.665 -24.692 -3.046 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.025 3.975 12 N -0.383 5.383 13 C 0.415 3.585 14 O -0.516 6.516 15 N -0.370 5.370 16 C -0.032 4.032 17 C -0.159 4.159 18 C -0.156 4.156 19 C 0.060 3.940 20 H 0.076 0.924 21 C -0.167 4.167 22 C 0.338 3.662 23 O -0.431 6.431 24 O -0.328 6.328 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.009 0.991 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.247 0.753 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 11.794 -24.413 -2.842 27.261 hybrid contribution -0.329 0.559 0.219 0.685 sum 11.465 -23.854 -2.622 26.596 Atomic orbital electron populations 1.70111 1.07982 1.27852 1.51676 1.26032 0.95734 1.03582 0.94795 0.85467 0.78179 0.77893 0.79297 1.18921 1.21270 1.19027 1.21657 0.93779 0.91971 1.50499 0.91433 1.18935 0.94438 0.92923 0.95071 1.21581 0.98425 0.91587 1.02129 1.21099 0.91326 0.84556 1.00516 1.45060 1.10861 1.03354 1.78992 1.15685 0.84186 0.80830 0.77782 1.90876 1.15978 1.84442 1.60260 1.47650 1.07708 1.04426 1.77225 1.22706 0.77548 1.00553 1.02430 1.22819 0.99574 0.92253 1.01264 1.22718 0.91323 0.97713 1.03815 1.21187 0.97221 0.79379 0.96206 0.92387 1.21786 1.02923 0.89569 1.02421 1.23218 0.73665 0.89169 0.80160 1.90707 1.55330 1.67525 1.29547 1.84511 1.67338 1.35207 1.45744 0.92827 0.98894 0.99058 0.91217 0.91440 0.93658 0.93277 0.75300 0.89291 0.89591 0.90576 0.86714 0.89460 0.88948 0.88349 0.85512 0.70915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.10 -3.80 5.27 30.60 0.16 -3.64 16 11 C 0.15 5.38 5.67 86.38 0.49 5.87 16 12 N -0.73 -20.74 5.52 -478.55 -2.64 -23.38 16 13 C 0.71 21.96 8.30 179.06 1.49 23.44 16 14 O -0.63 -25.23 15.12 -3.99 -0.06 -25.29 16 15 N -0.63 -13.80 3.06 -805.45 -2.47 -16.27 16 16 C 0.09 1.12 6.69 86.93 0.58 1.70 16 17 C -0.12 -1.11 7.10 32.06 0.23 -0.88 16 18 C -0.12 -1.49 5.58 31.78 0.18 -1.31 16 19 C 0.16 3.36 2.54 45.34 0.12 3.47 16 20 H 0.06 1.51 7.83 -2.39 -0.02 1.49 16 21 C -0.13 -2.55 5.29 29.85 0.16 -2.40 16 22 C 0.49 9.54 8.06 71.24 0.57 10.12 16 23 O -0.54 -12.82 15.81 21.95 0.35 -12.47 16 24 O -0.51 -7.41 13.42 -51.41 -0.69 -8.11 16 25 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 26 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 27 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.41 8.89 6.87 -92.71 -0.64 8.25 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.94 7.11 -2.39 -0.02 0.92 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.09 1.21 7.85 -2.38 -0.02 1.19 16 38 H 0.09 0.86 7.76 -2.39 -0.02 0.85 16 39 H 0.10 2.60 6.53 -2.39 -0.02 2.59 16 40 H 0.13 1.89 8.01 -2.38 -0.02 1.87 16 41 H 0.43 2.29 9.10 -74.06 -0.67 1.62 16 Total: -1.00 -77.30 341.52 1.35 -75.95 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -0.27 Total: 12.80 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 4.82 Total: 8.20 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -4.82 Total: -96.68 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.40 Total: -45.87 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -77.30 1.35 -75.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833063042.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.090 kcal (2) G-P(sol) polarization free energy of solvation -77.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds