Wall clock time and date at job start Tue Mar 31 2020 05:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99827 * 2 1 4 4 H 1.48498 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47110 * 300.00116 * 3 2 1 6 6 H 1.48497 * 109.47400 * 60.00014 * 3 2 1 7 7 C 1.37880 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00390 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99844 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99841 * 189.99854 * 10 9 7 12 12 C 1.50699 * 109.46797 * 71.54836 * 11 10 9 13 13 O 1.21271 * 120.00372 * 5.69599 * 12 11 10 14 14 N 1.34777 * 119.99656 * 185.69609 * 12 11 10 15 15 C 1.46498 * 120.00275 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47514 * 180.02562 * 15 14 12 17 17 C 1.50695 * 109.47355 * 179.97438 * 16 15 14 18 18 O 1.20825 * 120.00164 * 359.97438 * 17 16 15 19 19 O 1.34230 * 120.00226 * 179.97438 * 17 16 15 20 20 C 1.46907 * 110.99837 * 66.04604 * 10 9 7 21 21 C 1.53000 * 109.46804 * 199.75983 * 20 10 9 22 22 C 1.52989 * 117.50205 * 244.64676 * 21 20 10 23 23 C 1.52999 * 60.00269 * 252.51441 * 22 21 20 24 24 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47064 * 59.99601 * 9 7 2 26 26 H 1.08998 * 109.46816 * 299.99725 * 9 7 2 27 27 H 1.08995 * 109.46792 * 191.54804 * 11 10 9 28 28 H 1.09006 * 109.46916 * 311.54568 * 11 10 9 29 29 H 0.97010 * 119.99962 * 0.02562 * 14 12 11 30 30 H 1.09004 * 109.46699 * 300.00202 * 15 14 12 31 31 H 1.09001 * 109.46991 * 59.99417 * 15 14 12 32 32 H 1.09004 * 109.47133 * 299.99728 * 16 15 14 33 33 H 1.09001 * 109.47638 * 59.99605 * 16 15 14 34 34 H 0.96705 * 117.00025 * 179.97438 * 19 17 16 35 35 H 1.08993 * 109.46944 * 319.76103 * 20 10 9 36 36 H 1.08997 * 109.46810 * 79.76471 * 20 10 9 37 37 H 1.09005 * 115.54874 * 30.35799 * 21 20 10 38 38 H 1.09006 * 117.50079 * 0.02562 * 22 21 20 39 39 H 1.09001 * 117.50496 * 145.02342 * 22 21 20 40 40 H 1.08998 * 117.49779 * 252.51340 * 23 22 21 41 41 H 1.08998 * 117.50137 * 107.48598 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 1.5214 -4.8935 -0.2376 12 6 1.0718 -4.9624 -1.6743 13 8 1.3879 -4.0866 -2.4513 14 7 0.3183 -5.9974 -2.0957 15 6 -0.1184 -6.0647 -3.4924 16 6 -0.9538 -7.3286 -3.7053 17 6 -1.4035 -7.3975 -5.1419 18 8 -1.0885 -6.5250 -5.9161 19 8 -2.1540 -8.4282 -5.5616 20 6 2.9712 -3.6539 1.2539 21 6 4.2491 -4.4692 1.0464 22 6 4.3928 -5.7710 1.8370 23 6 5.2332 -4.5497 2.2151 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6243 -2.5567 0.8903 27 1 2.2059 -5.7162 -0.0312 28 1 0.6543 -4.9690 0.4186 29 1 0.0651 -6.6977 -1.4740 30 1 -0.7210 -5.1873 -3.7273 31 1 0.7543 -6.0913 -4.1450 32 1 -0.3515 -8.2062 -3.4702 33 1 -1.8265 -7.3015 -3.0527 34 1 -2.4186 -8.4286 -6.4917 35 1 3.2323 -2.6383 1.5512 36 1 2.3674 -4.1171 2.0342 37 1 4.6650 -4.4431 0.0391 38 1 3.5767 -6.0470 2.5049 39 1 4.9032 -6.6020 1.3501 40 1 6.2965 -4.5771 1.9768 41 1 4.9702 -4.0219 3.1318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:00 Heat of formation + Delta-G solvation = -97.845990 kcal Electronic energy + Delta-G solvation = -22247.836360 eV Core-core repulsion = 18742.781657 eV Total energy + Delta-G solvation = -3505.054703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55191 -39.29018 -37.58235 -36.51236 -35.42754 -34.70968 -32.40606 -31.34328 -28.20411 -27.25499 -25.04131 -23.70612 -22.15750 -21.37124 -21.10801 -20.17970 -19.55486 -18.36734 -16.97153 -16.61988 -16.52167 -16.39660 -15.50590 -15.17412 -15.02016 -14.64937 -14.12882 -13.84001 -13.67011 -13.48203 -13.21291 -12.79130 -12.16133 -12.11445 -11.95820 -11.80686 -11.70456 -11.65824 -11.27246 -11.16066 -10.89918 -10.86693 -10.57697 -10.46446 -10.06913 -9.71960 -9.49962 -9.28973 -9.00404 -8.82154 -8.32994 -7.23588 -5.92757 -3.91909 1.91894 2.55976 3.21295 3.38335 3.45740 3.50857 3.55416 4.11679 4.36577 4.51356 4.70096 4.80968 4.96023 5.15862 5.18001 5.25344 5.32896 5.43702 5.45623 5.67552 5.75495 5.78909 5.82097 5.91484 5.94692 6.10721 6.19853 6.28130 6.31704 6.50771 6.60856 6.81474 7.33719 7.34556 7.58511 7.73241 7.90624 8.19669 8.25158 8.59099 8.78794 9.14637 9.70785 11.18794 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.004173 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.147039 B = 6707.890264 C = 8597.650467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.498 4.498 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.516 5.516 11 C 0.041 3.959 12 C 0.511 3.489 13 O -0.494 6.494 14 N -0.747 5.747 15 C 0.132 3.868 16 C -0.125 4.125 17 C 0.482 3.518 18 O -0.506 6.506 19 O -0.519 6.519 20 C 0.092 3.908 21 C -0.134 4.134 22 C -0.193 4.193 23 C -0.183 4.183 24 H 0.259 0.741 25 H 0.041 0.959 26 H -0.014 1.014 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.395 0.605 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.412 0.588 35 H 0.095 0.905 36 H 0.022 0.978 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.935 -19.915 -1.679 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.213 1.213 7 C -0.537 4.537 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.241 5.241 11 C -0.091 4.091 12 C 0.296 3.704 13 O -0.364 6.364 14 N -0.403 5.403 15 C 0.008 3.992 16 C -0.163 4.163 17 C 0.324 3.676 18 O -0.393 6.393 19 O -0.332 6.332 20 C -0.036 4.036 21 C -0.153 4.153 22 C -0.230 4.230 23 C -0.220 4.220 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.004 0.996 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.229 0.771 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.271 0.729 35 H 0.113 0.887 36 H 0.040 0.960 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.298 -18.759 -2.457 18.921 hybrid contribution -0.601 0.326 0.274 0.736 sum -0.899 -18.433 -2.182 18.584 Atomic orbital electron populations 1.69967 1.06054 1.26461 1.51568 1.24960 0.94831 0.99218 0.95632 0.86466 0.80163 0.83588 0.77357 1.19625 1.21078 1.21264 1.21156 0.93511 0.89813 1.49218 0.91770 1.19815 0.90036 0.87162 0.96155 1.61781 1.27783 1.01185 1.33343 1.21879 0.98552 0.96431 0.92255 1.20844 0.77668 0.80825 0.91050 1.90778 1.53161 1.36663 1.55823 1.45968 1.56451 1.27119 1.10788 1.20948 0.98669 0.95947 0.83674 1.21476 1.02767 1.01543 0.90471 1.23178 0.74746 0.78398 0.91309 1.90803 1.53279 1.38630 1.56621 1.84512 1.65499 1.47693 1.35480 1.21614 0.91397 1.00621 0.89964 1.22502 0.98277 0.97866 0.96640 1.23029 1.03206 0.92129 1.04655 1.22884 0.96939 1.02025 1.00163 0.93149 0.94061 0.99604 0.89017 0.93214 0.77136 0.90516 0.90680 0.86961 0.86862 0.72924 0.88679 0.95957 0.87239 0.89360 0.89545 0.89288 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.50 -14.51 8.23 -34.44 -0.28 -14.80 16 8 H 0.06 1.86 7.31 -52.49 -0.38 1.48 16 9 C 0.19 5.18 4.36 -4.98 -0.02 5.16 16 10 N -0.52 -11.22 4.03 -237.51 -0.96 -12.18 16 11 C 0.04 0.70 5.28 -4.97 -0.03 0.67 16 12 C 0.51 9.27 7.34 -10.99 -0.08 9.19 16 13 O -0.49 -11.81 15.16 5.57 0.08 -11.72 16 14 N -0.75 -9.40 5.56 -60.30 -0.33 -9.74 16 15 C 0.13 1.63 4.96 -4.05 -0.02 1.61 16 16 C -0.12 -0.95 5.92 -27.89 -0.17 -1.11 16 17 C 0.48 4.57 8.33 36.00 0.30 4.87 16 18 O -0.51 -6.96 16.74 -18.75 -0.31 -7.28 16 19 O -0.52 -3.50 13.42 -39.26 -0.53 -4.02 16 20 C 0.09 1.74 5.09 -3.82 -0.02 1.72 16 21 C -0.13 -2.09 5.17 -90.62 -0.47 -2.56 16 22 C -0.19 -2.38 10.11 -26.74 -0.27 -2.65 16 23 C -0.18 -2.39 10.25 -26.73 -0.27 -2.67 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.04 1.24 6.50 -51.93 -0.34 0.90 16 26 H -0.01 -0.38 8.12 -51.93 -0.42 -0.81 16 27 H 0.09 1.29 7.30 -51.93 -0.38 0.91 16 28 H 0.05 0.79 8.06 -51.93 -0.42 0.38 16 29 H 0.40 3.33 8.47 -40.82 -0.35 2.98 16 30 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 31 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.41 1.20 9.10 45.56 0.41 1.62 16 35 H 0.10 2.03 6.58 -51.93 -0.34 1.69 16 36 H 0.02 0.39 7.73 -51.93 -0.40 -0.01 16 37 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -37.83 350.13 -8.03 -45.85 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.54 Total: 2.34 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.43 Total: 0.93 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.56 Total: -48.86 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.76 Total: -23.02 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.83 -8.03 -45.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.993 kcal (2) G-P(sol) polarization free energy of solvation -37.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds