Wall clock time and date at job start Tue Mar 31 2020 05:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99827 * 2 1 4 4 H 1.48498 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47110 * 300.00116 * 3 2 1 6 6 H 1.48497 * 109.47400 * 60.00014 * 3 2 1 7 7 C 1.37880 * 120.00495 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00390 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99844 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.47074 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99841 * 189.99854 * 10 9 7 12 12 C 1.50699 * 109.46797 * 71.54836 * 11 10 9 13 13 O 1.21271 * 120.00372 * 5.69599 * 12 11 10 14 14 N 1.34777 * 119.99656 * 185.69609 * 12 11 10 15 15 C 1.46498 * 120.00275 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47514 * 180.02562 * 15 14 12 17 17 C 1.50695 * 109.47355 * 179.97438 * 16 15 14 18 18 O 1.20825 * 120.00164 * 359.97438 * 17 16 15 19 19 O 1.34230 * 120.00226 * 179.97438 * 17 16 15 20 20 C 1.46907 * 110.99837 * 66.04604 * 10 9 7 21 21 C 1.53000 * 109.46804 * 199.75983 * 20 10 9 22 22 C 1.52989 * 117.50205 * 244.64676 * 21 20 10 23 23 C 1.52999 * 60.00269 * 252.51441 * 22 21 20 24 24 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47064 * 59.99601 * 9 7 2 26 26 H 1.08998 * 109.46816 * 299.99725 * 9 7 2 27 27 H 1.08995 * 109.46792 * 191.54804 * 11 10 9 28 28 H 1.09006 * 109.46916 * 311.54568 * 11 10 9 29 29 H 0.97010 * 119.99962 * 0.02562 * 14 12 11 30 30 H 1.09004 * 109.46699 * 300.00202 * 15 14 12 31 31 H 1.09001 * 109.46991 * 59.99417 * 15 14 12 32 32 H 1.09004 * 109.47133 * 299.99728 * 16 15 14 33 33 H 1.09001 * 109.47638 * 59.99605 * 16 15 14 34 34 H 0.96705 * 117.00025 * 179.97438 * 19 17 16 35 35 H 1.08993 * 109.46944 * 319.76103 * 20 10 9 36 36 H 1.08997 * 109.46810 * 79.76471 * 20 10 9 37 37 H 1.09005 * 115.54874 * 30.35799 * 21 20 10 38 38 H 1.09006 * 117.50079 * 0.02562 * 22 21 20 39 39 H 1.09001 * 117.50496 * 145.02342 * 22 21 20 40 40 H 1.08998 * 117.49779 * 252.51340 * 23 22 21 41 41 H 1.08998 * 117.50137 * 107.48598 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 1.5214 -4.8935 -0.2376 12 6 1.0718 -4.9624 -1.6743 13 8 1.3879 -4.0866 -2.4513 14 7 0.3183 -5.9974 -2.0957 15 6 -0.1184 -6.0647 -3.4924 16 6 -0.9538 -7.3286 -3.7053 17 6 -1.4035 -7.3975 -5.1419 18 8 -1.0885 -6.5250 -5.9161 19 8 -2.1540 -8.4282 -5.5616 20 6 2.9712 -3.6539 1.2539 21 6 4.2491 -4.4692 1.0464 22 6 4.3928 -5.7710 1.8370 23 6 5.2332 -4.5497 2.2151 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6243 -2.5567 0.8903 27 1 2.2059 -5.7162 -0.0312 28 1 0.6543 -4.9690 0.4186 29 1 0.0651 -6.6977 -1.4740 30 1 -0.7210 -5.1873 -3.7273 31 1 0.7543 -6.0913 -4.1450 32 1 -0.3515 -8.2062 -3.4702 33 1 -1.8265 -7.3015 -3.0527 34 1 -2.4186 -8.4286 -6.4917 35 1 3.2323 -2.6383 1.5512 36 1 2.3674 -4.1171 2.0342 37 1 4.6650 -4.4431 0.0391 38 1 3.5767 -6.0470 2.5049 39 1 4.9032 -6.6020 1.3501 40 1 6.2965 -4.5771 1.9768 41 1 4.9702 -4.0219 3.1318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833065480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:59 Heat of formation + Delta-G solvation = -128.444541 kcal Electronic energy + Delta-G solvation = -22249.163213 eV Core-core repulsion = 18742.781657 eV Total energy + Delta-G solvation = -3506.381556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35776 -40.69814 -38.90032 -37.25605 -36.78144 -36.08193 -34.56576 -32.40792 -29.86360 -28.93502 -26.43158 -25.22587 -23.18597 -22.89879 -22.10084 -21.45270 -20.94810 -19.11093 -18.61794 -18.15089 -17.49611 -17.38901 -16.86306 -16.80136 -16.23924 -16.16941 -15.55031 -15.24178 -15.03221 -14.70475 -14.36199 -14.17021 -13.90835 -13.63448 -13.30483 -13.02293 -12.97287 -12.72500 -12.59411 -12.53054 -12.43478 -12.24323 -12.12589 -11.92913 -11.72810 -11.30820 -11.10107 -10.75631 -10.67832 -10.51959 -10.09026 -8.95336 -8.18996 -6.26577 1.19130 1.37228 1.40061 1.52962 1.73827 1.80210 2.40401 2.53777 3.01496 3.13836 3.34172 3.55289 4.00404 4.02491 4.04792 4.18358 4.22123 4.33705 4.37349 4.45704 4.57925 4.59214 4.77130 4.86192 4.89374 4.90466 4.97851 5.11559 5.19931 5.34690 5.37947 5.45411 5.48615 5.62239 5.65957 6.09139 6.40737 6.51514 6.77176 6.88676 6.97272 7.41238 7.45018 8.92805 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.004173 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.147039 B = 6707.890264 C = 8597.650467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.214 3.786 10 N -0.535 5.535 11 C 0.042 3.958 12 C 0.506 3.494 13 O -0.564 6.564 14 N -0.717 5.717 15 C 0.132 3.868 16 C -0.111 4.111 17 C 0.488 3.512 18 O -0.560 6.560 19 O -0.507 6.507 20 C 0.098 3.902 21 C -0.159 4.159 22 C -0.162 4.162 23 C -0.177 4.177 24 H 0.263 0.737 25 H 0.002 0.998 26 H -0.035 1.035 27 H 0.132 0.868 28 H 0.068 0.932 29 H 0.421 0.579 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.429 0.571 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -22.591 -0.271 22.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.088 3.912 10 N -0.259 5.259 11 C -0.089 4.089 12 C 0.292 3.708 13 O -0.440 6.440 14 N -0.374 5.374 15 C 0.008 3.992 16 C -0.148 4.148 17 C 0.332 3.668 18 O -0.452 6.452 19 O -0.321 6.321 20 C -0.029 4.029 21 C -0.178 4.178 22 C -0.199 4.199 23 C -0.214 4.214 24 H 0.071 0.929 25 H 0.020 0.980 26 H -0.018 1.018 27 H 0.150 0.850 28 H 0.086 0.914 29 H 0.259 0.741 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.291 0.709 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.266 -21.544 -1.018 21.570 hybrid contribution -0.836 1.028 -0.183 1.337 sum -0.569 -20.517 -1.201 20.560 Atomic orbital electron populations 1.70090 1.07653 1.27587 1.52393 1.25886 0.95767 1.03108 0.95070 0.85379 0.79000 0.78797 0.77724 1.18842 1.20913 1.19720 1.21473 0.93406 0.91377 1.49118 0.92401 1.19323 0.90017 0.88809 0.93050 1.61589 1.27194 1.01861 1.35256 1.22000 0.99865 0.95206 0.91812 1.21169 0.77590 0.80930 0.91107 1.90753 1.56245 1.39544 1.57480 1.45622 1.54177 1.26094 1.11497 1.20853 0.98160 0.97424 0.82793 1.21418 1.03533 0.99947 0.89909 1.23464 0.73922 0.77845 0.91578 1.90803 1.55498 1.40707 1.58148 1.84468 1.64431 1.46118 1.37092 1.21520 0.92786 0.99619 0.89006 1.22181 0.97669 1.01017 0.96954 1.23133 1.02849 0.91248 1.02681 1.22994 0.97351 1.02398 0.98668 0.92869 0.98038 1.01781 0.85042 0.91428 0.74064 0.94066 0.92691 0.83156 0.83986 0.70910 0.92246 0.94489 0.88978 0.88012 0.87380 0.87915 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.45 13.29 21.45 0.28 -59.16 16 2 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 3 Si 0.97 47.24 29.54 68.60 2.03 49.26 16 4 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 6 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -31.30 8.23 25.60 0.21 -31.09 16 8 H 0.06 3.50 7.31 -2.91 -0.02 3.47 16 9 C 0.21 12.08 4.36 85.56 0.37 12.46 16 10 N -0.53 -23.83 4.03 -905.36 -3.65 -27.48 16 11 C 0.04 1.42 5.28 85.56 0.45 1.87 16 12 C 0.51 18.63 7.34 87.66 0.64 19.28 16 13 O -0.56 -28.58 15.16 -3.00 -0.05 -28.62 16 14 N -0.72 -17.29 5.56 -463.08 -2.57 -19.86 16 15 C 0.13 3.28 4.96 86.38 0.43 3.71 16 16 C -0.11 -1.40 5.92 29.84 0.18 -1.23 16 17 C 0.49 8.63 8.33 71.23 0.59 9.22 16 18 O -0.56 -15.81 16.74 21.97 0.37 -15.44 16 19 O -0.51 -5.59 13.42 -51.42 -0.69 -6.28 16 20 C 0.10 3.72 5.09 86.30 0.44 4.16 16 21 C -0.16 -4.75 5.17 -10.80 -0.06 -4.81 16 22 C -0.16 -3.38 10.11 30.59 0.31 -3.07 16 23 C -0.18 -4.18 10.25 30.59 0.31 -3.87 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.00 0.10 6.50 -2.39 -0.02 0.08 16 26 H -0.04 -2.08 8.12 -2.39 -0.02 -2.10 16 27 H 0.13 3.31 7.30 -2.39 -0.02 3.29 16 28 H 0.07 2.05 8.06 -2.38 -0.02 2.03 16 29 H 0.42 5.73 8.47 -92.70 -0.79 4.94 16 30 H 0.04 1.33 8.10 -2.38 -0.02 1.31 16 31 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.15 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.43 1.67 9.10 -74.05 -0.67 0.99 16 35 H 0.06 2.63 6.58 -2.39 -0.02 2.61 16 36 H 0.04 1.26 7.73 -2.39 -0.02 1.24 16 37 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 38 H 0.10 1.89 8.03 -2.38 -0.02 1.88 16 39 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -89.61 350.13 -0.34 -89.95 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -0.41 Total: 10.61 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 4.35 Total: 7.03 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -5.93 Total: -106.50 kcal Atomic # 8 Polarization: -49.98 SS G_CDS: -0.37 Total: -50.35 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.26 kcal Total: -89.61 -0.34 -89.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.495 kcal (2) G-P(sol) polarization free energy of solvation -89.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds