Wall clock time and date at job start Tue Mar 31 2020 05:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48505 * 109.46982 * 239.99985 * 3 2 1 5 5 H 1.48496 * 109.47366 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47072 * 120.00095 * 3 2 1 7 7 C 1.38812 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99998 * 179.41559 * 7 2 1 9 9 N 1.36932 * 120.00406 * 359.41179 * 7 2 1 10 10 C 1.46499 * 119.99527 * 346.95618 * 9 7 2 11 11 C 1.50699 * 109.47184 * 83.15899 * 10 9 7 12 12 O 1.20819 * 119.99991 * 5.98986 * 11 10 9 13 13 O 1.34232 * 119.99770 * 185.98931 * 11 10 9 14 14 C 1.46499 * 120.00445 * 166.95761 * 9 7 2 15 15 C 1.50701 * 109.47280 * 94.57604 * 14 9 7 16 16 O 1.21285 * 119.99607 * 354.74531 * 15 14 9 17 17 N 1.34776 * 120.00096 * 174.74731 * 15 14 9 18 18 C 1.46495 * 119.99783 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47448 * 275.00074 * 18 17 15 20 20 C 1.53002 * 109.47415 * 180.02562 * 19 18 17 21 21 C 1.52996 * 109.47227 * 59.99644 * 20 19 18 22 22 C 1.52999 * 109.47214 * 300.00479 * 21 20 19 23 23 C 1.52998 * 109.47221 * 59.99938 * 22 21 20 24 24 H 0.97002 * 120.00515 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47395 * 203.16019 * 10 9 7 26 26 H 1.09001 * 109.47702 * 323.15180 * 10 9 7 27 27 H 0.96702 * 116.99608 * 179.97438 * 13 11 10 28 28 H 1.08999 * 109.46879 * 334.57981 * 14 9 7 29 29 H 1.09001 * 109.47143 * 214.57517 * 14 9 7 30 30 H 0.97000 * 119.99692 * 0.02562 * 17 15 14 31 31 H 1.09001 * 109.47570 * 35.00459 * 18 17 15 32 32 H 1.09010 * 109.46797 * 300.00140 * 19 18 17 33 33 H 1.08996 * 109.47085 * 59.99785 * 19 18 17 34 34 H 1.09002 * 109.46459 * 300.00114 * 20 19 18 35 35 H 1.08997 * 109.46982 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.47190 * 179.97438 * 21 20 19 37 37 H 1.09010 * 109.47212 * 60.00193 * 21 20 19 38 38 H 1.09001 * 109.47049 * 299.99404 * 22 21 20 39 39 H 1.09009 * 109.46928 * 180.02562 * 22 21 20 40 40 H 1.09003 * 109.46889 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.47177 * 60.00385 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0101 9 7 1.3256 -2.3880 0.0111 10 6 -0.1084 -2.4030 0.3103 11 6 -0.8860 -2.0871 -0.9413 12 8 -0.3112 -1.9785 -1.9984 13 8 -2.2174 -1.9265 -0.8817 14 6 2.0272 -3.6418 -0.2756 15 6 2.4601 -4.2824 1.0180 16 8 2.2926 -3.7002 2.0687 17 7 3.0333 -5.5021 1.0072 18 6 3.4545 -6.1245 2.2647 19 6 4.8549 -5.6311 2.6340 20 6 5.2951 -6.2817 3.9470 21 6 5.3177 -7.8024 3.7803 22 6 3.9173 -8.2957 3.4110 23 6 3.4771 -7.6452 2.0980 24 1 -0.4851 0.8400 -0.0004 25 1 -0.3931 -3.3897 0.6757 26 1 -0.3284 -1.6560 1.0730 27 1 -2.6727 -1.7246 -1.7106 28 1 2.9036 -3.4353 -0.8899 29 1 1.3597 -4.3176 -0.8102 30 1 3.1675 -5.9674 0.1668 31 1 2.7543 -5.8558 3.0557 32 1 5.5552 -5.8999 1.8430 33 1 4.8389 -4.5477 2.7524 34 1 4.5949 -6.0132 4.7381 35 1 6.2926 -5.9298 4.2103 36 1 5.6317 -8.2658 4.7155 37 1 6.0178 -8.0709 2.9891 38 1 3.2171 -8.0274 4.2021 39 1 3.9333 -9.3793 3.2927 40 1 2.4793 -7.9964 1.8352 41 1 4.1772 -7.9137 1.3069 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833065886.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:43 Heat of formation + Delta-G solvation = -115.550814 kcal Electronic energy + Delta-G solvation = -23269.063713 eV Core-core repulsion = 19763.241271 eV Total energy + Delta-G solvation = -3505.822442 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.57830 -38.54325 -37.72223 -35.40623 -34.17190 -33.70001 -31.42333 -30.83717 -29.53176 -27.71636 -26.28129 -23.01371 -22.69327 -21.84025 -20.22914 -20.05075 -19.42640 -17.00170 -16.59275 -16.44218 -16.02971 -15.22871 -14.97730 -14.69893 -14.57491 -14.12149 -14.02048 -13.92795 -13.42806 -13.19794 -12.82857 -12.71311 -12.44190 -12.26429 -11.60969 -11.36472 -11.25355 -11.20860 -10.99836 -10.86803 -10.75512 -10.49795 -10.46496 -10.25414 -10.15657 -10.00079 -9.90698 -9.39019 -8.93631 -8.60522 -8.53254 -7.10699 -5.84913 -3.26125 3.39909 3.40404 3.43381 3.45312 3.58930 4.08516 4.40390 4.60898 4.66943 4.71189 4.83764 5.08214 5.18495 5.34599 5.37856 5.39334 5.42027 5.45184 5.53996 5.64547 5.75207 5.90507 5.96185 6.01321 6.07438 6.09018 6.15651 6.24386 6.35231 6.39923 6.49139 6.94049 7.09333 7.35289 7.63801 7.99956 8.04962 8.21559 8.95307 9.06456 9.60378 9.71281 10.07362 11.22110 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.021388 B = 0.004379 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.815411 B = 6391.900768 C = 7313.719867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.005 4.005 3 Si 0.927 3.073 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.552 5.552 10 C 0.199 3.801 11 C 0.492 3.508 12 O -0.544 6.544 13 O -0.539 6.539 14 C 0.133 3.867 15 C 0.478 3.522 16 O -0.519 6.519 17 N -0.743 5.743 18 C 0.146 3.854 19 C -0.129 4.129 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.125 4.125 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.126 0.874 27 H 0.377 0.623 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.393 0.607 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.941 -15.840 3.821 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.757 3.243 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.270 5.270 10 C 0.071 3.929 11 C 0.334 3.666 12 O -0.433 6.433 13 O -0.349 6.349 14 C 0.001 3.999 15 C 0.262 3.738 16 O -0.392 6.392 17 N -0.397 5.397 18 C 0.041 3.959 19 C -0.168 4.168 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.163 4.163 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.144 0.856 27 H 0.232 0.768 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.082 -15.233 4.685 17.058 hybrid contribution 0.247 0.906 -1.084 1.435 sum 6.329 -14.327 3.601 16.071 Atomic orbital electron populations 1.69392 1.05166 1.25691 1.57108 1.24799 0.95706 0.98426 1.00979 0.85954 0.78347 0.82106 0.77880 1.21051 1.21510 1.20958 1.19307 0.90909 0.82889 1.42275 0.90317 1.43401 1.03295 1.01576 1.78708 1.20327 0.81342 0.99207 0.92051 1.24775 0.78426 0.71162 0.92271 1.90467 1.69614 1.50309 1.32863 1.84610 1.24741 1.84425 1.41076 1.20712 0.98240 0.89338 0.91584 1.23057 0.76298 0.80066 0.94343 1.90653 1.53445 1.61827 1.33318 1.46395 1.64433 1.20031 1.08868 1.20828 0.95733 0.91358 0.88018 1.21922 0.96561 1.01217 0.97083 1.21497 1.01286 0.94904 0.97850 1.21562 0.96995 0.96028 1.01175 1.21479 0.97030 0.99598 0.97270 1.21798 1.01736 0.94586 0.98194 0.92897 0.94192 0.85628 0.76843 0.89697 0.91413 0.77394 0.89931 0.92179 0.91250 0.91815 0.92037 0.92166 0.92082 0.91741 0.91867 0.91476 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 7.91 55.49 0.44 -26.05 16 2 C 0.00 -0.14 5.36 -17.43 -0.09 -0.23 16 3 Si 0.93 22.62 29.55 -169.99 -5.02 17.60 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.23 -6.23 9.67 -15.06 -0.15 -6.37 16 8 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 9 N -0.55 -13.89 1.56 -175.98 -0.27 -14.16 16 10 C 0.20 4.95 5.63 -5.19 -0.03 4.92 16 11 C 0.49 12.36 5.84 36.01 0.21 12.57 16 12 O -0.54 -15.19 17.03 -18.74 -0.32 -15.51 16 13 O -0.54 -11.69 13.42 -39.26 -0.53 -12.22 16 14 C 0.13 2.65 6.12 -5.19 -0.03 2.61 16 15 C 0.48 8.98 7.86 -10.99 -0.09 8.89 16 16 O -0.52 -12.10 16.10 5.55 0.09 -12.01 16 17 N -0.74 -10.23 5.08 -53.81 -0.27 -10.50 16 18 C 0.15 1.84 2.45 -67.93 -0.17 1.68 16 19 C -0.13 -1.59 5.49 -26.73 -0.15 -1.74 16 20 C -0.12 -1.20 5.92 -26.73 -0.16 -1.35 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 23 C -0.13 -1.17 5.39 -26.73 -0.14 -1.31 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 25 H 0.04 0.89 8.02 -51.93 -0.42 0.47 16 26 H 0.13 3.46 6.31 -51.93 -0.33 3.13 16 27 H 0.38 6.56 9.10 45.56 0.41 6.97 16 28 H 0.09 1.59 8.00 -51.93 -0.42 1.18 16 29 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 30 H 0.39 4.21 8.60 -40.82 -0.35 3.86 16 31 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 32 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -34.48 336.83 -7.61 -42.08 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.68 Total: 8.31 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: -1.11 Total: 17.38 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.11 Total: -50.71 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.76 Total: -39.74 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.48 -7.61 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833065886.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.468 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds