Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47126 * 239.99886 * 3 2 1 5 5 H 1.48503 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47336 * 119.99631 * 3 2 1 7 7 C 1.38812 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99831 * 179.35282 * 7 2 1 9 9 N 1.36932 * 120.00340 * 359.35633 * 7 2 1 10 10 C 1.46503 * 119.99920 * 346.96121 * 9 7 2 11 11 C 1.50700 * 109.47113 * 83.15952 * 10 9 7 12 12 O 1.20824 * 119.99866 * 6.08514 * 11 10 9 13 13 O 1.34228 * 119.99992 * 186.07752 * 11 10 9 14 14 C 1.46497 * 120.00378 * 166.96234 * 9 7 2 15 15 C 1.50700 * 109.46988 * 85.56752 * 14 9 7 16 16 O 1.21280 * 120.00485 * 3.95901 * 15 14 9 17 17 N 1.34784 * 119.99711 * 183.96558 * 15 14 9 18 18 C 1.44574 * 118.64314 * 359.72845 * 17 15 14 19 19 C 1.54313 * 109.91106 * 270.85568 * 18 17 15 20 20 C 1.47091 * 110.29448 * 288.76342 * 19 18 17 21 21 C 1.52563 * 114.32907 * 62.72840 * 20 19 18 22 22 C 1.50884 * 109.35639 * 274.98095 * 21 20 19 23 23 C 1.47603 * 118.63937 * 180.02562 * 17 15 14 24 24 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47537 * 203.16275 * 10 9 7 26 26 H 1.09001 * 109.47078 * 323.16472 * 10 9 7 27 27 H 0.96707 * 116.99615 * 180.02562 * 13 11 10 28 28 H 1.09000 * 109.47217 * 205.56436 * 14 9 7 29 29 H 1.09001 * 109.47087 * 325.56535 * 14 9 7 30 30 H 1.09002 * 109.45052 * 30.76669 * 18 17 15 31 31 H 1.09005 * 109.44751 * 150.68779 * 18 17 15 32 32 H 1.08991 * 109.40171 * 168.46982 * 19 18 17 33 33 H 1.09004 * 109.27962 * 48.97386 * 19 18 17 34 34 H 1.09002 * 108.50961 * 301.47467 * 20 19 18 35 35 H 1.08995 * 108.51246 * 183.98816 * 20 19 18 36 36 H 1.09004 * 109.48866 * 155.01806 * 21 20 19 37 37 H 1.08996 * 109.49485 * 34.94632 * 21 20 19 38 38 H 1.09002 * 109.36691 * 331.69226 * 22 21 20 39 39 H 1.09005 * 109.36452 * 212.07943 * 22 21 20 40 40 H 1.09008 * 108.94739 * 258.54761 * 23 17 15 41 41 H 1.08998 * 108.95322 * 17.26575 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 -0.0100 9 7 1.3257 -2.3880 0.0144 10 6 -0.1081 -2.4026 0.3147 11 6 -0.8867 -2.0886 -0.9368 12 8 -0.3128 -1.9831 -1.9948 13 8 -2.2178 -1.9262 -0.8762 14 6 2.0270 -3.6421 -0.2710 15 6 2.6514 -4.1680 0.9957 16 8 2.4636 -3.5947 2.0478 17 7 3.4188 -5.2755 0.9594 18 6 3.6185 -5.9389 -0.3096 19 6 2.5070 -6.9850 -0.5363 20 6 2.6916 -8.1298 0.3687 21 6 2.5891 -7.7824 1.8507 22 6 3.9294 -7.2961 2.3442 23 6 4.0151 -5.7646 2.2179 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3926 -3.3888 0.6817 26 1 -0.3275 -1.6543 1.0763 27 1 -2.6738 -1.7263 -1.7052 28 1 1.3187 -4.3746 -0.6582 29 1 2.8056 -3.4624 -1.0125 30 1 3.5870 -5.2028 -1.1129 31 1 4.5888 -6.4355 -0.3107 32 1 2.5417 -7.3322 -1.5689 33 1 1.5368 -6.5266 -0.3448 34 1 3.6740 -8.5636 0.1821 35 1 1.9361 -8.8802 0.1360 36 1 2.2944 -8.6688 2.4125 37 1 1.8442 -6.9989 1.9899 38 1 4.7208 -7.7530 1.7501 39 1 4.0546 -7.5802 3.3892 40 1 5.0626 -5.4650 2.2531 41 1 3.4894 -5.3114 3.0583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = -95.658808 kcal Electronic energy + Delta-G solvation = -24050.631811 eV Core-core repulsion = 20545.671951 eV Total energy + Delta-G solvation = -3504.959860 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.92851 -38.51909 -37.27111 -35.39480 -34.16912 -33.57253 -32.73078 -31.27993 -28.15121 -26.91468 -26.16134 -25.09843 -22.78180 -21.31059 -20.44144 -19.97768 -18.47921 -16.92129 -16.78412 -16.40208 -16.10513 -15.43574 -15.08968 -14.83593 -14.39239 -14.16401 -13.94823 -13.82050 -13.43067 -13.26730 -13.00680 -12.70710 -12.36758 -12.01516 -11.59400 -11.47092 -11.31712 -11.04730 -10.91781 -10.82356 -10.70556 -10.65471 -10.49051 -10.39241 -10.13989 -9.99397 -9.90355 -9.35538 -8.92407 -8.53308 -8.23677 -7.09902 -5.84867 -3.25916 3.33706 3.38092 3.42528 3.44388 3.46764 4.07874 4.38426 4.60477 4.70943 4.79500 4.86806 5.03400 5.13028 5.23029 5.37548 5.38382 5.49862 5.58235 5.63213 5.72317 5.74674 5.91839 5.97993 6.04829 6.10297 6.13734 6.16309 6.18204 6.29042 6.37610 6.48375 6.98580 7.09089 7.34606 7.64066 7.86307 8.04518 8.20305 8.91233 9.06013 9.60422 9.71266 10.07574 11.22254 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.005503 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.245559 B = 5087.322530 C = 5883.086318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.005 4.005 3 Si 0.927 3.073 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.553 5.553 10 C 0.198 3.802 11 C 0.492 3.508 12 O -0.544 6.544 13 O -0.539 6.539 14 C 0.136 3.864 15 C 0.477 3.523 16 O -0.519 6.519 17 N -0.618 5.618 18 C 0.114 3.886 19 C -0.142 4.142 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.129 4.129 23 C 0.111 3.889 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.126 0.874 27 H 0.377 0.623 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 -15.670 0.552 16.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.757 3.243 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.271 5.271 10 C 0.070 3.930 11 C 0.334 3.666 12 O -0.432 6.432 13 O -0.348 6.348 14 C 0.004 3.996 15 C 0.264 3.736 16 O -0.392 6.392 17 N -0.355 5.355 18 C -0.010 4.010 19 C -0.181 4.181 20 C -0.151 4.151 21 C -0.154 4.154 22 C -0.167 4.167 23 C -0.012 4.012 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.144 0.856 27 H 0.232 0.768 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.635 -15.209 1.224 15.947 hybrid contribution 0.201 0.996 -0.725 1.248 sum 4.836 -14.213 0.499 15.022 Atomic orbital electron populations 1.69391 1.05147 1.25688 1.57164 1.24797 0.95711 0.98420 1.00986 0.85954 0.78349 0.82100 0.77881 1.21062 1.21501 1.20963 1.19274 0.90884 0.82909 1.42163 0.90426 1.43440 1.03323 1.01605 1.78740 1.20340 0.81351 0.99209 0.92082 1.24760 0.78426 0.71158 0.92290 1.90468 1.69645 1.50298 1.32783 1.84609 1.24736 1.84466 1.41036 1.20782 0.96936 0.89689 0.92153 1.23092 0.77671 0.79061 0.93813 1.90635 1.59316 1.56801 1.32482 1.47994 1.52016 1.28006 1.07488 1.21384 0.98084 0.95541 0.86021 1.21239 1.00310 0.96892 0.99612 1.20420 1.01601 0.98082 0.95008 1.21056 0.97823 1.00929 0.95620 1.21747 0.97875 0.95599 1.01455 1.21676 0.97860 0.93600 0.88039 0.92890 0.94187 0.85626 0.76844 0.90861 0.90418 0.90055 0.91151 0.90947 0.91447 0.92552 0.92747 0.92326 0.91365 0.91954 0.91229 0.92852 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.50 7.91 55.49 0.44 -26.06 16 2 C -0.01 -0.14 5.36 -17.43 -0.09 -0.24 16 3 Si 0.93 22.71 29.55 -169.99 -5.02 17.68 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.22 -6.22 9.66 -15.06 -0.15 -6.37 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.55 -13.97 1.57 -175.98 -0.28 -14.25 16 10 C 0.20 4.93 5.59 -5.19 -0.03 4.90 16 11 C 0.49 12.32 5.84 36.01 0.21 12.53 16 12 O -0.54 -15.10 17.03 -18.75 -0.32 -15.42 16 13 O -0.54 -11.64 13.42 -39.25 -0.53 -12.17 16 14 C 0.14 2.75 4.71 -5.20 -0.02 2.72 16 15 C 0.48 9.26 7.66 -10.98 -0.08 9.18 16 16 O -0.52 -12.33 15.69 5.56 0.09 -12.24 16 17 N -0.62 -9.08 2.25 -172.91 -0.39 -9.47 16 18 C 0.11 1.30 5.16 -4.38 -0.02 1.28 16 19 C -0.14 -1.45 5.69 -28.88 -0.16 -1.62 16 20 C -0.11 -1.06 5.15 -29.79 -0.15 -1.21 16 21 C -0.12 -1.21 5.51 -28.02 -0.15 -1.36 16 22 C -0.13 -1.28 5.71 -27.32 -0.16 -1.43 16 23 C 0.11 1.46 6.10 -2.96 -0.02 1.44 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.04 0.88 8.02 -51.93 -0.42 0.47 16 26 H 0.13 3.45 6.31 -51.93 -0.33 3.12 16 27 H 0.38 6.53 9.10 45.56 0.41 6.95 16 28 H 0.07 1.33 7.20 -51.93 -0.37 0.96 16 29 H 0.08 1.50 7.03 -51.93 -0.37 1.13 16 30 H 0.08 0.94 6.15 -51.93 -0.32 0.62 16 31 H 0.07 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.81 7.34 -51.93 -0.38 0.43 16 34 H 0.06 0.47 7.36 -51.93 -0.38 0.09 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 38 H 0.06 0.55 7.32 -51.93 -0.38 0.17 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.09 1.33 6.96 -51.93 -0.36 0.97 16 LS Contribution 326.05 15.07 4.91 4.91 Total: -1.00 -34.38 326.05 -7.29 -41.67 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.36 Total: 5.52 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: -0.83 Total: 19.83 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.23 Total: -49.78 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.76 Total: -39.83 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.38 -7.29 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.991 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds