Wall clock time and date at job start Tue Mar 31 2020 05:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47126 * 239.99886 * 3 2 1 5 5 H 1.48503 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47336 * 119.99631 * 3 2 1 7 7 C 1.38812 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99831 * 179.35282 * 7 2 1 9 9 N 1.36932 * 120.00340 * 359.35633 * 7 2 1 10 10 C 1.46503 * 119.99920 * 346.96121 * 9 7 2 11 11 C 1.50700 * 109.47113 * 83.15952 * 10 9 7 12 12 O 1.20824 * 119.99866 * 6.08514 * 11 10 9 13 13 O 1.34228 * 119.99992 * 186.07752 * 11 10 9 14 14 C 1.46497 * 120.00378 * 166.96234 * 9 7 2 15 15 C 1.50700 * 109.46988 * 85.56752 * 14 9 7 16 16 O 1.21280 * 120.00485 * 3.95901 * 15 14 9 17 17 N 1.34784 * 119.99711 * 183.96558 * 15 14 9 18 18 C 1.44574 * 118.64314 * 359.72845 * 17 15 14 19 19 C 1.54313 * 109.91106 * 270.85568 * 18 17 15 20 20 C 1.47091 * 110.29448 * 288.76342 * 19 18 17 21 21 C 1.52563 * 114.32907 * 62.72840 * 20 19 18 22 22 C 1.50884 * 109.35639 * 274.98095 * 21 20 19 23 23 C 1.47603 * 118.63937 * 180.02562 * 17 15 14 24 24 H 0.97001 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47537 * 203.16275 * 10 9 7 26 26 H 1.09001 * 109.47078 * 323.16472 * 10 9 7 27 27 H 0.96707 * 116.99615 * 180.02562 * 13 11 10 28 28 H 1.09000 * 109.47217 * 205.56436 * 14 9 7 29 29 H 1.09001 * 109.47087 * 325.56535 * 14 9 7 30 30 H 1.09002 * 109.45052 * 30.76669 * 18 17 15 31 31 H 1.09005 * 109.44751 * 150.68779 * 18 17 15 32 32 H 1.08991 * 109.40171 * 168.46982 * 19 18 17 33 33 H 1.09004 * 109.27962 * 48.97386 * 19 18 17 34 34 H 1.09002 * 108.50961 * 301.47467 * 20 19 18 35 35 H 1.08995 * 108.51246 * 183.98816 * 20 19 18 36 36 H 1.09004 * 109.48866 * 155.01806 * 21 20 19 37 37 H 1.08996 * 109.49485 * 34.94632 * 21 20 19 38 38 H 1.09002 * 109.36691 * 331.69226 * 22 21 20 39 39 H 1.09005 * 109.36452 * 212.07943 * 22 21 20 40 40 H 1.09008 * 108.94739 * 258.54761 * 23 17 15 41 41 H 1.08998 * 108.95322 * 17.26575 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 -0.0100 9 7 1.3257 -2.3880 0.0144 10 6 -0.1081 -2.4026 0.3147 11 6 -0.8867 -2.0886 -0.9368 12 8 -0.3128 -1.9831 -1.9948 13 8 -2.2178 -1.9262 -0.8762 14 6 2.0270 -3.6421 -0.2710 15 6 2.6514 -4.1680 0.9957 16 8 2.4636 -3.5947 2.0478 17 7 3.4188 -5.2755 0.9594 18 6 3.6185 -5.9389 -0.3096 19 6 2.5070 -6.9850 -0.5363 20 6 2.6916 -8.1298 0.3687 21 6 2.5891 -7.7824 1.8507 22 6 3.9294 -7.2961 2.3442 23 6 4.0151 -5.7646 2.2179 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3926 -3.3888 0.6817 26 1 -0.3275 -1.6543 1.0763 27 1 -2.6738 -1.7263 -1.7052 28 1 1.3187 -4.3746 -0.6582 29 1 2.8056 -3.4624 -1.0125 30 1 3.5870 -5.2028 -1.1129 31 1 4.5888 -6.4355 -0.3107 32 1 2.5417 -7.3322 -1.5689 33 1 1.5368 -6.5266 -0.3448 34 1 3.6740 -8.5636 0.1821 35 1 1.9361 -8.8802 0.1360 36 1 2.2944 -8.6688 2.4125 37 1 1.8442 -6.9989 1.9899 38 1 4.7208 -7.7530 1.7501 39 1 4.0546 -7.5802 3.3892 40 1 5.0626 -5.4650 2.2531 41 1 3.4894 -5.3114 3.0583 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:01 Heat of formation + Delta-G solvation = -117.969096 kcal Electronic energy + Delta-G solvation = -24051.599258 eV Core-core repulsion = 20545.671951 eV Total energy + Delta-G solvation = -3505.927307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.23925 -40.42324 -38.55494 -37.22954 -36.11366 -34.72832 -33.80084 -33.12978 -29.90417 -28.61147 -27.42328 -26.14870 -24.55878 -22.62332 -21.81897 -21.26971 -19.79972 -18.82012 -18.51212 -17.98441 -17.51817 -16.95192 -16.61408 -16.55936 -15.91514 -15.60200 -15.31341 -15.17142 -14.95963 -14.74390 -14.13077 -14.00770 -13.62096 -13.30584 -13.23436 -13.03960 -12.90615 -12.72969 -12.47109 -12.34459 -12.14294 -12.02370 -11.87474 -11.76630 -11.51768 -11.45740 -11.24436 -11.22890 -10.72974 -10.52146 -9.46417 -9.05989 -7.94377 -5.35728 1.43575 1.46831 1.52563 1.84290 2.04618 2.17955 2.48216 2.85513 3.31475 3.55417 3.70869 3.99380 4.05226 4.07189 4.14699 4.24403 4.40960 4.50186 4.53928 4.65593 4.69096 4.77644 4.81197 4.93801 5.03859 5.08613 5.26443 5.28307 5.30662 5.32852 5.34046 5.43328 5.49828 5.55226 5.85097 6.15621 6.23494 6.55645 6.98968 7.42776 7.64062 7.79865 8.04658 9.10061 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020063 B = 0.005503 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.245559 B = 5087.322530 C = 5883.086318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.058 4.058 3 Si 0.983 3.017 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.571 5.571 10 C 0.200 3.800 11 C 0.499 3.501 12 O -0.574 6.574 13 O -0.531 6.531 14 C 0.136 3.864 15 C 0.480 3.520 16 O -0.573 6.573 17 N -0.605 5.605 18 C 0.104 3.896 19 C -0.137 4.137 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.118 4.118 23 C 0.107 3.893 24 H 0.252 0.748 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.399 0.601 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.686 -17.789 -0.188 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.250 4.250 3 Si 0.812 3.188 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.362 4.362 8 H 0.093 0.907 9 N -0.289 5.289 10 C 0.071 3.929 11 C 0.342 3.658 12 O -0.465 6.465 13 O -0.342 6.342 14 C 0.006 3.994 15 C 0.266 3.734 16 O -0.451 6.451 17 N -0.339 5.339 18 C -0.019 4.019 19 C -0.176 4.176 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.015 4.015 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.256 0.744 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.899 -17.407 0.458 18.385 hybrid contribution -0.190 1.527 -0.492 1.615 sum 5.709 -15.880 -0.033 16.876 Atomic orbital electron populations 1.69564 1.05946 1.25470 1.58230 1.25539 0.96634 1.01175 1.01627 0.85077 0.77203 0.78702 0.77848 1.20582 1.21689 1.20682 1.19496 0.91026 0.84220 1.41445 0.90726 1.43560 1.03595 1.02529 1.79252 1.20173 0.81789 0.99409 0.91508 1.24685 0.79142 0.70283 0.91703 1.90443 1.70546 1.51749 1.33773 1.84529 1.23315 1.83880 1.42482 1.20946 0.97333 0.88328 0.92797 1.22700 0.78118 0.80061 0.92494 1.90615 1.61687 1.58959 1.33884 1.47935 1.50018 1.26511 1.09453 1.21712 1.00192 0.95897 0.84071 1.21216 0.98391 0.96675 1.01305 1.20422 1.03124 0.97790 0.93739 1.21074 0.97069 1.00444 0.96983 1.21713 0.98389 0.92619 1.02885 1.21825 0.97600 0.95980 0.86072 0.93757 0.91910 0.88563 0.74390 0.89000 0.89524 0.90218 0.88185 0.88671 0.93751 0.90444 0.91890 0.90855 0.94703 0.89575 0.89890 0.91778 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.95 7.91 21.65 0.17 -54.78 16 2 C -0.06 -3.33 5.36 84.86 0.45 -2.87 16 3 Si 0.98 47.27 29.55 68.60 2.03 49.30 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.23 -13.14 9.66 84.03 0.81 -12.33 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.57 -29.26 1.57 -710.68 -1.12 -30.37 16 10 C 0.20 10.09 5.59 85.63 0.48 10.57 16 11 C 0.50 25.01 5.84 71.24 0.42 25.42 16 12 O -0.57 -31.90 17.03 21.97 0.37 -31.53 16 13 O -0.53 -22.58 13.42 -51.39 -0.69 -23.27 16 14 C 0.14 5.48 4.71 85.63 0.40 5.89 16 15 C 0.48 18.77 7.66 87.66 0.67 19.44 16 16 O -0.57 -28.16 15.69 -3.03 -0.05 -28.21 16 17 N -0.60 -17.13 2.25 -819.36 -1.85 -18.98 16 18 C 0.10 2.10 5.16 87.18 0.45 2.55 16 19 C -0.14 -2.44 5.69 29.20 0.17 -2.27 16 20 C -0.11 -1.72 5.15 28.61 0.15 -1.58 16 21 C -0.12 -2.17 5.51 29.76 0.16 -2.01 16 22 C -0.12 -2.01 5.71 30.21 0.17 -1.84 16 23 C 0.11 2.70 6.10 86.48 0.53 3.23 16 24 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.06 2.81 8.02 -2.39 -0.02 2.79 16 26 H 0.10 5.46 6.31 -2.39 -0.02 5.45 16 27 H 0.40 13.30 9.10 -74.05 -0.67 12.62 16 28 H 0.09 3.30 7.20 -2.39 -0.02 3.29 16 29 H 0.09 3.31 7.03 -2.39 -0.02 3.29 16 30 H 0.08 1.67 6.15 -2.39 -0.01 1.65 16 31 H 0.10 1.50 8.06 -2.38 -0.02 1.48 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.00 7.34 -2.38 -0.02 0.98 16 34 H 0.08 0.90 7.36 -2.39 -0.02 0.88 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.03 0.88 7.48 -2.39 -0.02 0.86 16 38 H 0.09 1.11 7.32 -2.39 -0.02 1.09 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.05 1.75 6.96 -2.39 -0.02 1.74 16 Total: -1.00 -75.90 326.05 4.10 -71.80 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.37 Total: 21.83 kcal Atomic # 6 Polarization: 39.35 SS G_CDS: 4.86 Total: 44.22 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -2.79 Total: -104.13 kcal Atomic # 8 Polarization: -82.65 SS G_CDS: -0.36 Total: -83.01 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -75.90 4.10 -71.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.170 kcal (2) G-P(sol) polarization free energy of solvation -75.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds