Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48506 * 109.47093 * 240.00393 * 3 2 1 5 5 H 1.48504 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00110 * 3 2 1 7 7 C 1.38950 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00300 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99701 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46896 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99909 * 185.16608 * 13 12 10 15 15 C 1.52999 * 109.46895 * 61.09102 * 14 13 12 16 16 C 1.50698 * 109.47476 * 54.51602 * 15 14 13 17 17 O 1.20832 * 119.99379 * 353.99189 * 16 15 14 18 18 O 1.34222 * 120.00409 * 173.99918 * 16 15 14 19 19 C 1.53004 * 109.47243 * 181.08760 * 14 13 12 20 20 C 1.52999 * 109.46895 * 60.00342 * 19 14 13 21 21 C 1.52999 * 109.47359 * 60.00039 * 20 19 14 22 22 C 1.53008 * 109.47062 * 300.00211 * 21 20 19 23 23 C 1.52999 * 109.47206 * 59.99695 * 22 21 20 24 24 H 0.96999 * 119.99843 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00593 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47876 * 59.99741 * 12 10 9 27 27 H 1.08998 * 109.47158 * 299.99142 * 12 10 9 28 28 H 1.00897 * 111.00033 * 61.21640 * 13 12 10 29 29 H 1.08998 * 109.47071 * 294.50902 * 15 14 13 30 30 H 1.09005 * 109.46901 * 174.51340 * 15 14 13 31 31 H 0.96705 * 116.99985 * 180.02562 * 18 16 15 32 32 H 1.08998 * 109.46907 * 180.02562 * 19 14 13 33 33 H 1.08995 * 109.47143 * 300.00430 * 19 14 13 34 34 H 1.09004 * 109.47097 * 300.00302 * 20 19 14 35 35 H 1.09002 * 109.47183 * 179.97438 * 20 19 14 36 36 H 1.08993 * 109.47510 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47364 * 59.99706 * 21 20 19 38 38 H 1.08996 * 109.46905 * 299.99492 * 22 21 20 39 39 H 1.09005 * 109.47196 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47183 * 180.02562 * 23 22 21 41 41 H 1.09006 * 109.46865 * 60.00354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.5023 -7.2672 -0.1223 15 6 0.7359 -7.3072 -1.4459 16 6 1.6804 -7.0122 -2.5825 17 8 2.8207 -6.6862 -2.3512 18 8 1.2550 -7.1115 -3.8516 19 6 2.5249 -8.4048 -0.0906 20 6 3.2913 -8.3648 1.2330 21 6 2.3103 -8.5284 2.3956 22 6 1.2876 -7.3908 2.3639 23 6 0.5212 -7.4308 1.0403 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 0.0005 26 1 0.6179 -4.9209 -0.8896 27 1 0.6161 -4.9205 0.8903 28 1 2.7773 -5.9596 0.8278 29 1 -0.0573 -6.5598 -1.4292 30 1 0.2998 -8.2967 -1.5834 31 1 1.8973 -6.9128 -4.5467 32 1 2.0085 -9.3602 -0.1831 33 1 3.2239 -8.2883 -0.9188 34 1 3.8077 -7.4093 1.3251 35 1 4.0196 -9.1755 1.2559 36 1 2.8562 -8.4994 3.3386 37 1 1.7938 -9.4838 2.3036 38 1 1.8040 -6.4353 2.4560 39 1 0.5883 -7.5075 3.1919 40 1 -0.2071 -6.6201 1.0174 41 1 0.0047 -8.3863 0.9482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -133.351700 kcal Electronic energy + Delta-G solvation = -23766.673644 eV Core-core repulsion = 20260.079297 eV Total energy + Delta-G solvation = -3506.594346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63883 -39.06202 -37.82623 -35.74986 -34.27349 -33.70537 -31.44758 -31.05432 -30.62103 -27.88571 -26.15193 -23.98149 -22.82192 -22.33115 -20.51847 -19.22738 -18.53059 -17.83372 -17.66695 -16.61436 -16.10723 -15.67548 -15.49556 -14.90400 -14.62939 -14.40149 -14.06379 -13.91391 -13.71699 -13.18193 -12.99874 -12.44277 -12.37190 -12.20824 -12.06652 -11.90694 -11.69196 -11.42333 -11.32339 -11.11923 -11.07574 -10.93898 -10.44757 -10.40099 -10.35271 -10.16353 -10.06941 -9.91226 -9.43383 -8.34240 -7.90178 -7.76752 -6.36008 -3.76278 2.60962 3.23965 3.24258 3.28687 3.33734 3.99328 4.15251 4.38428 4.51159 4.64692 4.78699 5.02378 5.10750 5.13903 5.27929 5.29391 5.34952 5.42608 5.48352 5.55000 5.61558 5.67335 5.70846 5.81536 5.93559 5.97290 6.03126 6.10721 6.13418 6.25484 6.33637 6.42044 6.43475 6.82552 7.39271 7.60454 7.80011 8.13137 8.27088 8.69124 9.24779 9.61699 10.14718 10.82014 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.004680 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.173562 B = 5981.391395 C = 6691.814883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.297 4.297 8 H 0.101 0.899 9 N -0.568 5.568 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.044 3.956 13 N -0.636 5.636 14 C 0.128 3.872 15 C -0.103 4.103 16 C 0.464 3.536 17 O -0.460 6.460 18 O -0.533 6.533 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.150 4.150 24 H 0.271 0.729 25 H 0.391 0.609 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.350 0.650 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.405 0.595 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 -18.344 0.085 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.427 4.427 8 H 0.119 0.881 9 N -0.206 5.206 10 C 0.229 3.771 11 O -0.459 6.459 12 C -0.089 4.089 13 N -0.270 5.270 14 C 0.036 3.964 15 C -0.141 4.141 16 C 0.303 3.697 17 O -0.342 6.342 18 O -0.346 6.346 19 C -0.147 4.147 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.190 4.190 24 H 0.081 0.919 25 H 0.224 0.776 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.173 0.827 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.263 0.737 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.887 -18.104 -0.188 18.203 hybrid contribution -0.384 1.023 0.381 1.157 sum -2.270 -17.081 0.193 17.232 Atomic orbital electron populations 1.69603 1.05893 1.28099 1.51045 1.25227 0.95617 0.99600 0.97533 0.85935 0.78750 0.80586 0.79036 1.19953 1.21024 1.19977 1.19645 0.93306 0.82314 1.47386 0.88086 1.41853 1.09062 1.04585 1.65060 1.19820 0.88439 0.84623 0.84169 1.90532 1.13731 1.87010 1.54582 1.21761 0.94774 0.91670 1.00679 1.60294 1.20824 0.98604 1.47305 1.20720 0.92704 0.91717 0.91261 1.21482 0.97621 1.04494 0.90491 1.23181 0.88570 0.75047 0.82879 1.90833 1.19717 1.39586 1.84095 1.84511 1.49084 1.83371 1.17666 1.21651 0.98072 0.95965 0.99005 1.21544 0.97774 1.02527 0.94130 1.21556 0.97165 0.98379 0.98523 1.21534 0.98152 0.99368 0.96927 1.22279 0.98781 1.02476 0.95417 0.91943 0.77632 0.90338 0.93767 0.82695 0.87876 0.88091 0.73690 0.92182 0.89912 0.90997 0.92052 0.92144 0.92219 0.91712 0.91826 0.91254 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 13.05 55.50 0.72 -24.29 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 9 N -0.57 -14.79 5.29 -10.96 -0.06 -14.85 16 10 C 0.44 10.87 7.83 -10.98 -0.09 10.78 16 11 O -0.58 -16.33 15.89 5.55 0.09 -16.24 16 12 C 0.04 0.79 5.34 -4.97 -0.03 0.77 16 13 N -0.64 -10.60 3.74 -101.21 -0.38 -10.98 16 14 C 0.13 1.58 0.28 -131.60 -0.04 1.54 16 15 C -0.10 -1.17 4.36 -27.88 -0.12 -1.29 16 16 C 0.46 6.51 7.80 36.00 0.28 6.79 16 17 O -0.46 -8.26 13.93 -18.75 -0.26 -8.52 16 18 O -0.53 -6.21 13.42 -39.24 -0.53 -6.74 16 19 C -0.11 -1.27 4.67 -26.73 -0.12 -1.39 16 20 C -0.12 -1.36 5.66 -26.73 -0.15 -1.51 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 22 C -0.12 -1.30 5.66 -26.73 -0.15 -1.46 16 23 C -0.15 -1.57 4.32 -26.73 -0.12 -1.68 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 26 H 0.08 1.33 6.19 -51.93 -0.32 1.01 16 27 H 0.04 0.71 6.58 -51.93 -0.34 0.37 16 28 H 0.35 6.13 5.08 -39.29 -0.20 5.93 16 29 H 0.10 1.13 6.61 -51.93 -0.34 0.79 16 30 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.40 3.33 9.10 45.56 0.41 3.74 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.15 6.22 -51.93 -0.32 0.83 16 34 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.82 6.79 -51.93 -0.35 0.47 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 323.21 15.07 4.87 4.87 Total: -1.00 -34.26 323.21 -6.43 -40.69 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -4.94 Total: 16.47 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.93 Total: 3.08 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.29 Total: -50.13 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -0.70 Total: -31.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.26 -6.43 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.661 kcal (2) G-P(sol) polarization free energy of solvation -34.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds