Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86798 * 120.00218 * 2 1 4 4 H 1.48506 * 109.47093 * 240.00393 * 3 2 1 5 5 H 1.48504 * 109.47143 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47182 * 120.00110 * 3 2 1 7 7 C 1.38950 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21285 * 120.00300 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99701 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.46896 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99909 * 185.16608 * 13 12 10 15 15 C 1.52999 * 109.46895 * 61.09102 * 14 13 12 16 16 C 1.50698 * 109.47476 * 54.51602 * 15 14 13 17 17 O 1.20832 * 119.99379 * 353.99189 * 16 15 14 18 18 O 1.34222 * 120.00409 * 173.99918 * 16 15 14 19 19 C 1.53004 * 109.47243 * 181.08760 * 14 13 12 20 20 C 1.52999 * 109.46895 * 60.00342 * 19 14 13 21 21 C 1.52999 * 109.47359 * 60.00039 * 20 19 14 22 22 C 1.53008 * 109.47062 * 300.00211 * 21 20 19 23 23 C 1.52999 * 109.47206 * 59.99695 * 22 21 20 24 24 H 0.96999 * 119.99843 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00593 * 359.97438 * 9 7 2 26 26 H 1.08996 * 109.47876 * 59.99741 * 12 10 9 27 27 H 1.08998 * 109.47158 * 299.99142 * 12 10 9 28 28 H 1.00897 * 111.00033 * 61.21640 * 13 12 10 29 29 H 1.08998 * 109.47071 * 294.50902 * 15 14 13 30 30 H 1.09005 * 109.46901 * 174.51340 * 15 14 13 31 31 H 0.96705 * 116.99985 * 180.02562 * 18 16 15 32 32 H 1.08998 * 109.46907 * 180.02562 * 19 14 13 33 33 H 1.08995 * 109.47143 * 300.00430 * 19 14 13 34 34 H 1.09004 * 109.47097 * 300.00302 * 20 19 14 35 35 H 1.09002 * 109.47183 * 179.97438 * 20 19 14 36 36 H 1.08993 * 109.47510 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.47364 * 59.99706 * 21 20 19 38 38 H 1.08996 * 109.46905 * 299.99492 * 22 21 20 39 39 H 1.09005 * 109.47196 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47183 * 180.02562 * 23 22 21 41 41 H 1.09006 * 109.46865 * 60.00354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2436 -4.8629 0.0010 13 7 2.1983 -5.9795 0.0017 14 6 1.5023 -7.2672 -0.1223 15 6 0.7359 -7.3072 -1.4459 16 6 1.6804 -7.0122 -2.5825 17 8 2.8207 -6.6862 -2.3512 18 8 1.2550 -7.1115 -3.8516 19 6 2.5249 -8.4048 -0.0906 20 6 3.2913 -8.3648 1.2330 21 6 2.3103 -8.5284 2.3956 22 6 1.2876 -7.3908 2.3639 23 6 0.5212 -7.4308 1.0403 24 1 -0.4850 0.8400 0.0004 25 1 0.3533 -2.3907 0.0005 26 1 0.6179 -4.9209 -0.8896 27 1 0.6161 -4.9205 0.8903 28 1 2.7773 -5.9596 0.8278 29 1 -0.0573 -6.5598 -1.4292 30 1 0.2998 -8.2967 -1.5834 31 1 1.8973 -6.9128 -4.5467 32 1 2.0085 -9.3602 -0.1831 33 1 3.2239 -8.2883 -0.9188 34 1 3.8077 -7.4093 1.3251 35 1 4.0196 -9.1755 1.2559 36 1 2.8562 -8.4994 3.3386 37 1 1.7938 -9.4838 2.3036 38 1 1.8040 -6.4353 2.4560 39 1 0.5883 -7.5075 3.1919 40 1 -0.2071 -6.6201 1.0174 41 1 0.0047 -8.3863 0.9482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = -159.111985 kcal Electronic energy + Delta-G solvation = -23767.790693 eV Core-core repulsion = 20260.079297 eV Total energy + Delta-G solvation = -3507.711396 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.69156 -40.26634 -39.57602 -36.80086 -36.02886 -35.14595 -33.27289 -32.43976 -31.53931 -28.94935 -27.74733 -25.74456 -23.73516 -23.28300 -21.45898 -21.05412 -19.94312 -19.50843 -18.71156 -17.99922 -17.26104 -17.10314 -16.65852 -16.41908 -15.99344 -15.90432 -15.41386 -15.22378 -15.08516 -14.47897 -14.00166 -13.95256 -13.53482 -13.48243 -13.23797 -13.09614 -12.94772 -12.88133 -12.58074 -12.43637 -12.41078 -12.16625 -12.12487 -11.95409 -11.50653 -11.36697 -11.31546 -10.96187 -10.90383 -10.31497 -10.00903 -9.02229 -8.46655 -5.95272 1.38553 1.39710 1.50920 1.55234 2.06984 2.28173 2.34080 2.98103 3.20019 3.52010 3.66259 3.78470 3.93830 4.18012 4.26945 4.28226 4.33890 4.43332 4.49362 4.54784 4.64412 4.69127 4.75328 4.79076 4.83460 4.89567 5.09564 5.18268 5.26733 5.29256 5.39676 5.42954 5.49814 5.56193 5.89271 5.94889 6.25760 6.51557 6.61941 7.13416 7.28107 7.57108 8.14393 8.70664 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.004680 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.173562 B = 5981.391395 C = 6691.814883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.074 0.926 9 N -0.575 5.575 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.063 3.937 13 N -0.655 5.655 14 C 0.126 3.874 15 C -0.104 4.104 16 C 0.463 3.537 17 O -0.510 6.510 18 O -0.528 6.528 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.144 4.144 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.341 0.659 29 H 0.112 0.888 30 H 0.141 0.859 31 H 0.418 0.582 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.781 -19.734 0.267 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.092 0.908 9 N -0.213 5.213 10 C 0.225 3.775 11 O -0.507 6.507 12 C -0.070 4.070 13 N -0.289 5.289 14 C 0.035 3.965 15 C -0.142 4.142 16 C 0.305 3.695 17 O -0.396 6.396 18 O -0.342 6.342 19 C -0.143 4.143 20 C -0.160 4.160 21 C -0.149 4.149 22 C -0.162 4.162 23 C -0.183 4.183 24 H 0.087 0.913 25 H 0.229 0.771 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.130 0.870 30 H 0.159 0.841 31 H 0.278 0.722 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.926 -19.517 -0.028 19.908 hybrid contribution 0.255 1.400 0.271 1.448 sum -3.671 -18.118 0.242 18.487 Atomic orbital electron populations 1.69658 1.06721 1.29318 1.50373 1.25999 0.96566 1.02240 0.96291 0.85014 0.77807 0.76792 0.78847 1.19977 1.19160 1.19747 1.19596 0.92559 0.84210 1.50105 0.90773 1.41913 1.09192 1.04651 1.65527 1.20994 0.88304 0.86255 0.81957 1.90495 1.16111 1.87978 1.56157 1.21562 0.94335 0.88718 1.02370 1.60274 1.21368 1.00148 1.47118 1.20891 0.93264 0.89540 0.92788 1.21655 0.96903 1.06975 0.88653 1.23783 0.88266 0.73626 0.83853 1.90834 1.21916 1.42026 1.84833 1.84485 1.49389 1.82814 1.17482 1.21622 0.97648 0.97069 0.97933 1.21522 0.98336 1.01158 0.94958 1.21513 0.96638 0.99014 0.97737 1.21549 0.98493 0.98293 0.97819 1.22236 0.98023 1.04118 0.93895 0.91272 0.77056 0.88766 0.91426 0.83771 0.87042 0.84134 0.72170 0.89030 0.92707 0.94210 0.91094 0.92007 0.89914 0.94624 0.90394 0.91383 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.47 13.05 21.66 0.28 -50.18 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 3 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.34 -19.77 9.68 84.04 0.81 -18.96 16 8 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -30.73 5.29 -306.98 -1.62 -32.36 16 10 C 0.44 22.08 7.83 87.66 0.69 22.77 16 11 O -0.62 -37.03 15.89 -3.05 -0.05 -37.08 16 12 C 0.06 2.25 5.34 85.56 0.46 2.70 16 13 N -0.66 -22.00 3.74 -474.14 -1.77 -23.77 16 14 C 0.13 2.87 0.28 3.53 0.00 2.87 16 15 C -0.10 -2.08 4.36 29.85 0.13 -1.95 16 16 C 0.46 12.49 7.80 71.24 0.56 13.04 16 17 O -0.51 -18.64 13.93 21.95 0.31 -18.34 16 18 O -0.53 -11.47 13.42 -51.34 -0.69 -12.16 16 19 C -0.11 -2.26 4.67 30.60 0.14 -2.12 16 20 C -0.12 -2.63 5.66 30.59 0.17 -2.46 16 21 C -0.11 -1.93 5.92 30.60 0.18 -1.74 16 22 C -0.12 -2.39 5.66 30.60 0.17 -2.22 16 23 C -0.14 -2.53 4.32 30.59 0.13 -2.39 16 24 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 25 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 26 H 0.09 3.08 6.19 -2.39 -0.01 3.07 16 27 H 0.07 2.11 6.58 -2.39 -0.02 2.10 16 28 H 0.34 12.44 5.08 -89.70 -0.46 11.99 16 29 H 0.11 2.08 6.61 -2.39 -0.02 2.06 16 30 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.42 6.51 9.10 -74.05 -0.67 5.83 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.52 6.22 -2.39 -0.01 1.50 16 34 H 0.04 1.11 6.55 -2.38 -0.02 1.09 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.03 0.89 6.79 -2.39 -0.02 0.88 16 39 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.07 1.24 6.50 -2.39 -0.02 1.22 16 41 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -77.06 323.21 1.62 -75.43 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.78 Total: 42.90 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 3.91 Total: 9.39 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -3.11 Total: -106.31 kcal Atomic # 8 Polarization: -67.14 SS G_CDS: -0.43 Total: -67.58 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.06 1.62 -75.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.677 kcal (2) G-P(sol) polarization free energy of solvation -77.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds