Wall clock time and date at job start Tue Mar 31 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47368 * 2 1 4 4 N 1.46502 * 109.46653 * 240.00205 * 2 1 3 5 5 C 1.34766 * 120.00446 * 60.61665 * 4 2 1 6 6 O 1.21519 * 119.99849 * 359.97438 * 5 4 2 7 7 O 1.34638 * 120.00604 * 179.97438 * 5 4 2 8 8 C 1.50697 * 109.46755 * 120.00228 * 2 1 3 9 9 O 1.21276 * 120.00009 * 260.49413 * 8 2 1 10 10 N 1.34781 * 119.99823 * 80.49953 * 8 2 1 11 11 C 1.46935 * 120.62667 * 175.55289 * 10 8 2 12 12 C 1.53198 * 108.88879 * 126.46044 * 11 10 8 13 13 C 1.53034 * 109.31008 * 54.56437 * 12 11 10 14 14 C 1.50707 * 109.45727 * 178.62463 * 13 12 11 15 15 H 1.08002 * 119.99836 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00237 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99661 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00017 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47065 * 90.00561 * 18 16 14 20 20 H 1.48503 * 109.47272 * 210.00024 * 18 16 14 21 21 H 1.48491 * 109.47523 * 330.00118 * 18 16 14 22 22 C 1.53045 * 109.54071 * 298.62911 * 13 12 11 23 23 C 1.46951 * 120.65661 * 355.36925 * 10 8 2 24 24 H 1.09002 * 109.46858 * 300.00445 * 1 2 3 25 25 H 1.09008 * 109.46850 * 59.99527 * 1 2 3 26 26 H 1.08996 * 109.47497 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47117 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47288 * 300.00144 * 3 2 1 29 29 H 1.09008 * 109.46836 * 59.99775 * 3 2 1 30 30 H 0.97001 * 119.99741 * 240.61095 * 4 2 1 31 31 H 0.96698 * 117.00152 * 179.97438 * 7 5 4 32 32 H 1.08997 * 109.58922 * 6.60309 * 11 10 8 33 33 H 1.08996 * 109.58361 * 246.32019 * 11 10 8 34 34 H 1.09000 * 109.49129 * 174.50981 * 12 11 10 35 35 H 1.08992 * 109.49764 * 294.57668 * 12 11 10 36 36 H 1.09003 * 109.46728 * 58.65678 * 13 12 11 37 37 H 0.96994 * 119.99762 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.49698 * 181.32211 * 22 13 12 39 39 H 1.09001 * 109.49286 * 301.38479 * 22 13 12 40 40 H 1.08996 * 109.46979 * 113.75348 * 23 10 8 41 41 H 1.09000 * 109.71128 * 353.46454 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7030 -0.2230 -2.4202 6 8 1.0133 0.7713 -2.5317 7 8 2.1521 -0.8573 -3.5196 8 6 2.0323 -0.7105 1.2304 9 8 2.3979 -0.0704 2.1934 10 7 2.0752 -2.0572 1.2606 11 6 2.6521 -2.7622 2.4135 12 6 1.6309 -3.7776 2.9357 13 6 1.1985 -4.6954 1.7900 14 6 0.2192 -5.7173 2.3077 15 1 -0.0665 -5.7123 3.3492 16 6 -0.3129 -6.6579 1.4514 17 7 0.0346 -6.6637 0.1830 18 14 -1.5273 -7.9240 2.0928 19 1 -2.9084 -7.3926 1.9686 20 1 -1.4047 -9.1737 1.3000 21 1 -1.2344 -8.2124 3.5197 22 6 0.5337 -3.8636 0.6908 23 6 1.5425 -2.8491 0.1432 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.5686 -1.4844 -1.1073 31 1 1.8995 -0.4848 -4.3754 32 1 2.8889 -2.0449 3.1993 33 1 3.5602 -3.2815 2.1072 34 1 2.0832 -4.3736 3.7284 35 1 0.7614 -3.2503 3.3281 36 1 2.0723 -5.2039 1.3824 37 1 -0.3394 -7.3256 -0.4193 38 1 0.2050 -4.5208 -0.1142 39 1 -0.3261 -3.3360 1.1037 40 1 2.3590 -3.3759 -0.3506 41 1 1.0476 -2.1908 -0.5709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833459961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:19 Heat of formation + Delta-G solvation = -111.342027 kcal Electronic energy + Delta-G solvation = -24190.864095 eV Core-core repulsion = 20685.224160 eV Total energy + Delta-G solvation = -3505.639935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18551 -39.67816 -37.16654 -36.69434 -35.39959 -33.57266 -31.50104 -31.26611 -30.19632 -27.27153 -26.50967 -24.37268 -23.13915 -22.34954 -21.35676 -19.73890 -19.40655 -18.02647 -17.39026 -16.90759 -16.28655 -15.99195 -15.61705 -15.08933 -14.64875 -14.54592 -13.81212 -13.44148 -13.37445 -13.16656 -12.85273 -12.80335 -12.48905 -12.33299 -12.16481 -11.96900 -11.67504 -11.54150 -11.36088 -11.17283 -10.98364 -10.70785 -10.55420 -10.45719 -10.17569 -9.79520 -9.52226 -9.36673 -9.25200 -8.88833 -8.44751 -8.16855 -6.09086 -4.15119 2.11155 2.69906 2.87092 3.19813 3.24825 3.32298 3.35486 4.36008 4.36478 4.54148 4.89698 4.95089 5.20600 5.43905 5.57523 5.67848 5.71654 5.75318 5.83878 5.84581 5.90272 6.04554 6.13833 6.18888 6.23211 6.26835 6.35051 6.54071 6.55214 6.77671 6.93506 7.02550 7.16733 7.25562 7.58173 7.71456 7.83670 7.96145 8.24678 8.32929 8.33444 8.88128 9.50437 10.96501 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.005144 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.144560 B = 5441.650947 C = 6243.338801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.180 3.820 3 C -0.150 4.150 4 N -0.702 5.702 5 C 0.667 3.333 6 O -0.574 6.574 7 O -0.525 6.525 8 C 0.515 3.485 9 O -0.540 6.540 10 N -0.595 5.595 11 C 0.109 3.891 12 C -0.123 4.123 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.062 3.938 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.122 4.122 23 C 0.075 3.925 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.414 0.586 31 H 0.428 0.572 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.106 0.894 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 10.657 -5.369 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.092 3.908 3 C -0.208 4.208 4 N -0.367 5.367 5 C 0.419 3.581 6 O -0.464 6.464 7 O -0.335 6.335 8 C 0.300 3.700 9 O -0.417 6.417 10 N -0.327 5.327 11 C -0.012 4.012 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.531 5.531 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.160 4.160 23 C -0.047 4.047 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.254 0.746 31 H 0.288 0.712 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.163 11.159 -4.732 12.816 hybrid contribution -0.635 -1.086 -0.270 1.287 sum 3.528 10.073 -5.003 11.787 Atomic orbital electron populations 1.22346 0.91565 1.04074 1.04638 1.20521 0.96449 0.93322 0.80462 1.22084 1.01415 0.93068 1.04273 1.45370 1.56113 1.32892 1.02356 1.17743 0.78235 0.80662 0.81444 1.90987 1.42083 1.26931 1.86424 1.84214 1.73709 1.58387 1.17203 1.20273 0.78524 0.82516 0.88642 1.90679 1.48899 1.65782 1.36335 1.48357 1.58540 1.04806 1.20976 1.21773 0.96470 0.95157 0.87844 1.22004 0.97358 0.96670 1.00098 1.18646 0.95979 0.91869 0.90531 1.21192 1.25410 1.13061 0.95383 0.92680 1.24955 0.96583 0.97462 0.94927 1.69821 1.44104 1.35676 1.03461 0.86608 0.81528 0.81004 0.78956 1.20733 1.21235 1.19951 1.22016 0.95742 0.95698 1.02568 1.22686 0.98646 0.95059 0.88347 0.90708 0.89101 0.91027 0.92287 0.89582 0.90344 0.74581 0.71245 0.90174 0.91876 0.91998 0.92854 0.95405 0.92933 0.87607 0.94121 0.91699 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 8.15 37.16 0.30 -2.02 16 2 C 0.18 2.53 0.63 -132.97 -0.08 2.45 16 3 C -0.15 -1.99 7.87 37.16 0.29 -1.70 16 4 N -0.70 -9.02 3.23 -53.55 -0.17 -9.19 16 5 C 0.67 8.45 8.54 54.05 0.46 8.91 16 6 O -0.57 -8.38 13.34 -19.29 -0.26 -8.63 16 7 O -0.53 -5.18 13.48 -40.32 -0.54 -5.72 16 8 C 0.51 8.46 6.55 -10.99 -0.07 8.39 16 9 O -0.54 -10.17 15.45 5.56 0.09 -10.09 16 10 N -0.59 -9.86 2.93 -172.74 -0.51 -10.37 16 11 C 0.11 1.87 6.44 -3.70 -0.02 1.84 16 12 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 13 C 0.05 1.09 2.06 -91.73 -0.19 0.91 16 14 C -0.51 -13.24 8.56 -34.44 -0.29 -13.53 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 17 N -0.89 -23.77 11.30 55.43 0.63 -23.14 16 18 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.12 -2.55 5.15 -26.61 -0.14 -2.68 16 23 C 0.07 1.23 4.18 -3.70 -0.02 1.22 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.09 1.26 6.21 -51.92 -0.32 0.94 16 26 H 0.07 1.04 6.59 -51.93 -0.34 0.70 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 1.15 6.12 -51.93 -0.32 0.83 16 29 H 0.08 1.03 7.90 -51.92 -0.41 0.62 16 30 H 0.41 5.16 6.06 -40.82 -0.25 4.92 16 31 H 0.43 2.19 9.11 45.56 0.42 2.61 16 32 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.11 2.49 6.03 -51.93 -0.31 2.18 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 1.03 7.92 -51.93 -0.41 0.62 16 41 H 0.09 1.35 3.59 -51.93 -0.19 1.16 16 LS Contribution 318.91 15.07 4.81 4.81 Total: -1.00 -29.69 318.91 -5.98 -35.67 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.00 Total: 8.47 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 0.00 Total: 2.76 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.05 Total: -42.70 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.71 Total: -24.44 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.69 -5.98 -35.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833459961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.673 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds