Wall clock time and date at job start Tue Mar 31 2020 05:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47368 * 2 1 4 4 N 1.46502 * 109.46653 * 240.00205 * 2 1 3 5 5 C 1.34766 * 120.00446 * 60.61665 * 4 2 1 6 6 O 1.21519 * 119.99849 * 359.97438 * 5 4 2 7 7 O 1.34638 * 120.00604 * 179.97438 * 5 4 2 8 8 C 1.50697 * 109.46755 * 120.00228 * 2 1 3 9 9 O 1.21276 * 120.00009 * 260.49413 * 8 2 1 10 10 N 1.34781 * 119.99823 * 80.49953 * 8 2 1 11 11 C 1.46935 * 120.62667 * 175.55289 * 10 8 2 12 12 C 1.53198 * 108.88879 * 126.46044 * 11 10 8 13 13 C 1.53034 * 109.31008 * 54.56437 * 12 11 10 14 14 C 1.50707 * 109.45727 * 178.62463 * 13 12 11 15 15 H 1.08002 * 119.99836 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00237 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99661 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00017 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47065 * 90.00561 * 18 16 14 20 20 H 1.48503 * 109.47272 * 210.00024 * 18 16 14 21 21 H 1.48491 * 109.47523 * 330.00118 * 18 16 14 22 22 C 1.53045 * 109.54071 * 298.62911 * 13 12 11 23 23 C 1.46951 * 120.65661 * 355.36925 * 10 8 2 24 24 H 1.09002 * 109.46858 * 300.00445 * 1 2 3 25 25 H 1.09008 * 109.46850 * 59.99527 * 1 2 3 26 26 H 1.08996 * 109.47497 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47117 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47288 * 300.00144 * 3 2 1 29 29 H 1.09008 * 109.46836 * 59.99775 * 3 2 1 30 30 H 0.97001 * 119.99741 * 240.61095 * 4 2 1 31 31 H 0.96698 * 117.00152 * 179.97438 * 7 5 4 32 32 H 1.08997 * 109.58922 * 6.60309 * 11 10 8 33 33 H 1.08996 * 109.58361 * 246.32019 * 11 10 8 34 34 H 1.09000 * 109.49129 * 174.50981 * 12 11 10 35 35 H 1.08992 * 109.49764 * 294.57668 * 12 11 10 36 36 H 1.09003 * 109.46728 * 58.65678 * 13 12 11 37 37 H 0.96994 * 119.99762 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.49698 * 181.32211 * 22 13 12 39 39 H 1.09001 * 109.49286 * 301.38479 * 22 13 12 40 40 H 1.08996 * 109.46979 * 113.75348 * 23 10 8 41 41 H 1.09000 * 109.71128 * 353.46454 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.7030 -0.2230 -2.4202 6 8 1.0133 0.7713 -2.5317 7 8 2.1521 -0.8573 -3.5196 8 6 2.0323 -0.7105 1.2304 9 8 2.3979 -0.0704 2.1934 10 7 2.0752 -2.0572 1.2606 11 6 2.6521 -2.7622 2.4135 12 6 1.6309 -3.7776 2.9357 13 6 1.1985 -4.6954 1.7900 14 6 0.2192 -5.7173 2.3077 15 1 -0.0665 -5.7123 3.3492 16 6 -0.3129 -6.6579 1.4514 17 7 0.0346 -6.6637 0.1830 18 14 -1.5273 -7.9240 2.0928 19 1 -2.9084 -7.3926 1.9686 20 1 -1.4047 -9.1737 1.3000 21 1 -1.2344 -8.2124 3.5197 22 6 0.5337 -3.8636 0.6908 23 6 1.5425 -2.8491 0.1432 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 2.5686 -1.4844 -1.1073 31 1 1.8995 -0.4848 -4.3754 32 1 2.8889 -2.0449 3.1993 33 1 3.5602 -3.2815 2.1072 34 1 2.0832 -4.3736 3.7284 35 1 0.7614 -3.2503 3.3281 36 1 2.0723 -5.2039 1.3824 37 1 -0.3394 -7.3256 -0.4193 38 1 0.2050 -4.5208 -0.1142 39 1 -0.3261 -3.3360 1.1037 40 1 2.3590 -3.3759 -0.3506 41 1 1.0476 -2.1908 -0.5709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833459961.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:19 Heat of formation + Delta-G solvation = -131.725300 kcal Electronic energy + Delta-G solvation = -24191.747980 eV Core-core repulsion = 20685.224160 eV Total energy + Delta-G solvation = -3506.523820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.35116 -40.82485 -38.63900 -37.76882 -36.45999 -35.31537 -32.98583 -32.57154 -31.73807 -28.37828 -28.20482 -25.77759 -24.60764 -23.75418 -22.62737 -21.09069 -20.66436 -19.26747 -18.67789 -18.19682 -17.89357 -17.08336 -16.88066 -16.49182 -16.35039 -15.83956 -15.09179 -14.89164 -14.59996 -14.54466 -14.41200 -14.25212 -13.88247 -13.48941 -13.30943 -13.23930 -13.14410 -12.95669 -12.79279 -12.60575 -12.46096 -12.19447 -12.14849 -11.96588 -11.60284 -11.48948 -11.03632 -10.99077 -10.76530 -10.43576 -10.20463 -9.64810 -8.07716 -6.19900 1.04488 1.41304 1.44343 1.52266 1.61508 1.75859 1.88748 2.44571 3.15236 3.19502 3.56100 3.80317 3.83783 4.06032 4.25537 4.32630 4.40236 4.53322 4.57273 4.63878 4.67929 4.72529 4.78835 4.85251 4.94440 5.07766 5.13200 5.19231 5.20224 5.26463 5.41461 5.49746 5.64573 5.83015 5.99560 6.12690 6.24849 6.33618 6.40721 6.89300 6.93983 7.40533 7.47787 8.95571 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.005144 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.144560 B = 5441.650947 C = 6243.338801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.184 3.816 3 C -0.143 4.143 4 N -0.702 5.702 5 C 0.670 3.330 6 O -0.594 6.594 7 O -0.518 6.518 8 C 0.518 3.482 9 O -0.562 6.562 10 N -0.595 5.595 11 C 0.114 3.886 12 C -0.114 4.114 13 C 0.045 3.955 14 C -0.534 4.534 15 H 0.046 0.954 16 C 0.020 3.980 17 N -0.910 5.910 18 Si 0.945 3.055 19 H -0.279 1.279 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.113 4.113 23 C 0.089 3.911 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.417 0.583 31 H 0.448 0.552 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.008 0.992 37 H 0.261 0.739 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 11.201 -5.971 13.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.097 3.903 3 C -0.201 4.201 4 N -0.368 5.368 5 C 0.423 3.577 6 O -0.485 6.485 7 O -0.331 6.331 8 C 0.305 3.695 9 O -0.441 6.441 10 N -0.327 5.327 11 C -0.008 4.008 12 C -0.152 4.152 13 C 0.027 3.973 14 C -0.572 4.572 15 H 0.064 0.936 16 C -0.179 4.179 17 N -0.549 5.549 18 Si 0.772 3.228 19 H -0.205 1.205 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.151 4.151 23 C -0.032 4.032 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.257 0.743 31 H 0.311 0.689 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.046 0.954 40 H 0.096 0.904 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.499 11.701 -5.364 13.636 hybrid contribution -0.732 -1.276 -0.099 1.475 sum 3.767 10.425 -5.463 12.358 Atomic orbital electron populations 1.22302 0.91313 1.03509 1.04992 1.20420 0.96461 0.93508 0.79960 1.22026 1.01455 0.92350 1.04296 1.45253 1.56214 1.32935 1.02354 1.17705 0.77804 0.80346 0.81804 1.90982 1.42941 1.27832 1.86781 1.84195 1.73203 1.58004 1.17663 1.20607 0.77737 0.82148 0.89050 1.90671 1.49844 1.66112 1.37424 1.48344 1.58499 1.05053 1.20780 1.21699 0.96134 0.94675 0.88242 1.21852 0.97645 0.96649 0.99084 1.18620 0.94618 0.92083 0.92006 1.21539 1.26236 1.14258 0.95133 0.93572 1.25583 0.98048 0.99084 0.95221 1.69925 1.44802 1.36135 1.04074 0.85756 0.79637 0.79025 0.78408 1.20526 1.20904 1.19797 1.21769 0.96317 0.95957 1.01095 1.22529 0.98034 0.94392 0.88294 0.90240 0.88904 0.91969 0.92121 0.89456 0.90360 0.74268 0.68872 0.89724 0.90274 0.91634 0.94033 0.97416 0.92952 0.90180 0.95445 0.90450 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.27 8.15 71.98 0.59 -3.68 16 2 C 0.18 4.87 0.63 2.86 0.00 4.87 16 3 C -0.14 -3.54 7.87 71.98 0.57 -2.98 16 4 N -0.70 -16.58 3.23 -553.76 -1.79 -18.37 16 5 C 0.67 15.48 8.54 129.79 1.11 16.59 16 6 O -0.59 -16.11 13.34 19.78 0.26 -15.85 16 7 O -0.52 -8.83 13.48 -55.47 -0.75 -9.58 16 8 C 0.52 16.19 6.55 87.66 0.57 16.76 16 9 O -0.56 -20.34 15.45 -3.02 -0.05 -20.38 16 10 N -0.60 -18.88 2.93 -818.83 -2.40 -21.28 16 11 C 0.11 3.75 6.44 86.36 0.56 4.31 16 12 C -0.11 -4.41 5.30 30.67 0.16 -4.25 16 13 C 0.05 2.07 2.06 -11.51 -0.02 2.04 16 14 C -0.53 -27.87 8.56 25.60 0.22 -27.65 16 15 H 0.05 2.43 7.74 -2.91 -0.02 2.40 16 16 C 0.02 1.04 5.30 84.66 0.45 1.49 16 17 N -0.91 -48.78 11.30 21.45 0.24 -48.54 16 18 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 C -0.11 -4.72 5.15 30.67 0.16 -4.56 16 23 C 0.09 2.85 4.18 86.36 0.36 3.21 16 24 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 2.43 6.21 -2.38 -0.01 2.41 16 26 H 0.06 1.73 6.59 -2.39 -0.02 1.72 16 27 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 2.17 6.12 -2.39 -0.01 2.15 16 29 H 0.08 1.93 7.90 -2.38 -0.02 1.91 16 30 H 0.42 9.43 6.06 -92.71 -0.56 8.87 16 31 H 0.45 3.35 9.11 -74.06 -0.67 2.68 16 32 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.26 13.44 8.31 -92.71 -0.77 12.67 16 38 H 0.08 3.81 6.03 -2.39 -0.01 3.80 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 2.32 7.92 -2.39 -0.02 2.30 16 41 H 0.11 3.06 3.59 -2.39 -0.01 3.05 16 Total: -1.00 -62.36 318.91 2.10 -60.26 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.17 Total: 23.57 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 4.72 Total: 6.14 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -3.95 Total: -88.19 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -0.53 Total: -45.81 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -62.36 2.10 -60.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833459961.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.467 kcal (2) G-P(sol) polarization free energy of solvation -62.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds