Wall clock time and date at job start Tue Mar 31 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46881 * 2 1 4 4 N 1.46901 * 109.47194 * 119.99815 * 2 1 3 5 5 C 1.46892 * 110.99860 * 167.16330 * 4 2 1 6 6 C 1.50702 * 109.47348 * 293.95611 * 5 4 2 7 7 H 1.07997 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00443 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99626 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47208 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47311 * 119.99975 * 10 8 6 13 13 H 1.48501 * 109.47413 * 239.99947 * 10 8 6 14 14 C 1.46898 * 110.99922 * 291.12194 * 4 2 1 15 15 N 1.46503 * 109.47248 * 155.62858 * 14 4 2 16 16 C 1.46764 * 124.34692 * 282.22564 * 15 14 4 17 17 C 1.54657 * 105.38542 * 162.85385 * 16 15 14 18 18 H 1.08991 * 110.82453 * 143.77233 * 17 16 15 19 19 C 1.50708 * 111.22289 * 267.57752 * 17 16 15 20 20 O 1.20832 * 119.99794 * 23.39583 * 19 17 16 21 21 O 1.34222 * 119.99772 * 203.39766 * 19 17 16 22 22 C 1.54633 * 101.68169 * 25.75996 * 17 16 15 23 23 C 1.34413 * 124.35329 * 102.51667 * 15 14 4 24 24 O 1.21283 * 124.94108 * 0.39262 * 23 15 14 25 25 H 1.09003 * 109.47088 * 304.74996 * 1 2 3 26 26 H 1.08996 * 109.46942 * 64.75057 * 1 2 3 27 27 H 1.09004 * 109.46604 * 184.75071 * 1 2 3 28 28 H 1.08994 * 109.46882 * 240.00407 * 2 1 3 29 29 H 1.08996 * 109.46889 * 174.18119 * 3 2 1 30 30 H 1.08999 * 109.47006 * 294.18365 * 3 2 1 31 31 H 1.09006 * 109.46944 * 54.18562 * 3 2 1 32 32 H 1.09001 * 109.47199 * 53.95603 * 5 4 2 33 33 H 1.08999 * 109.47094 * 173.95872 * 5 4 2 34 34 H 0.97000 * 120.00382 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47054 * 275.62205 * 14 4 2 36 36 H 1.08999 * 109.47629 * 35.62105 * 14 4 2 37 37 H 1.09006 * 110.24369 * 281.98283 * 16 15 14 38 38 H 1.08997 * 110.24790 * 43.97752 * 16 15 14 39 39 H 0.96708 * 116.99493 * 180.02562 * 21 19 17 40 40 H 1.09007 * 110.48425 * 216.31235 * 22 17 16 41 41 H 1.08995 * 110.48493 * 93.67219 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1995 5 6 3.4559 -0.9816 1.0909 6 6 3.6855 -1.9773 -0.0168 7 1 2.8483 -2.3575 -0.5832 8 6 4.9644 -2.4034 -0.3064 9 7 5.9839 -1.9408 0.3837 10 14 5.2490 -3.6381 -1.6790 11 1 3.9479 -4.0003 -2.2966 12 1 6.1362 -3.0387 -2.7080 13 1 5.8890 -4.8575 -1.1232 14 6 1.7293 0.0849 2.4116 15 7 1.6762 -0.8139 3.5672 16 6 0.5364 -1.6800 3.8909 17 6 1.0872 -2.7283 4.8857 18 1 0.3391 -2.9797 5.6374 19 6 1.5628 -3.9649 4.1674 20 8 1.8835 -3.9021 3.0041 21 8 1.6300 -5.1359 4.8199 22 6 2.2738 -1.9656 5.5192 23 6 2.6627 -0.9473 4.4704 24 8 3.7122 -0.3398 4.4475 25 1 -0.3633 0.5858 0.8444 26 1 -0.3633 0.4383 -0.9295 27 1 -0.3633 -1.0242 0.0851 28 1 1.8934 -0.5137 -0.8900 29 1 3.1250 1.4443 0.1042 30 1 1.7642 1.9254 -0.9375 31 1 1.5941 1.9855 0.8334 32 1 3.9961 -0.0611 0.8698 33 1 3.8151 -1.3966 2.0326 34 1 6.8835 -2.2409 0.1802 35 1 2.5133 0.8267 2.5640 36 1 0.7694 0.5889 2.2988 37 1 -0.2599 -1.0978 4.3547 38 1 0.1692 -2.1725 2.9906 39 1 1.9415 -5.9012 4.3174 40 1 3.1026 -2.6456 5.7166 41 1 1.9609 -1.4676 6.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833496791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:06 Heat of formation + Delta-G solvation = -108.608019 kcal Electronic energy + Delta-G solvation = -24287.295087 eV Core-core repulsion = 20781.773707 eV Total energy + Delta-G solvation = -3505.521380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.78155 -39.26058 -37.45351 -36.19660 -35.52261 -32.65912 -32.47691 -30.20740 -27.67392 -27.09590 -26.61179 -24.82387 -23.61694 -21.97151 -20.52533 -19.69086 -18.53682 -18.03577 -16.95153 -16.43841 -16.13628 -15.45734 -15.16183 -15.03497 -14.77052 -14.27831 -13.99927 -13.27475 -13.19651 -13.13909 -12.92859 -12.79573 -12.31964 -12.28614 -11.97792 -11.73320 -11.55292 -11.44132 -11.28129 -11.22585 -10.90856 -10.67059 -10.59684 -10.41689 -10.18582 -10.01177 -9.70235 -9.42356 -9.06625 -8.40057 -8.25372 -7.17080 -5.86031 -3.86162 2.38967 2.91693 3.08316 3.38061 3.44736 3.44963 3.49967 4.31990 4.40005 4.53957 4.77650 5.01573 5.10667 5.32494 5.40849 5.48120 5.49740 5.60152 5.67640 5.74598 5.75056 5.87821 5.95047 6.00829 6.06583 6.24454 6.26565 6.51840 6.70058 6.76009 6.83307 6.91145 7.46152 7.50763 7.61852 7.93820 8.10967 8.24862 8.33097 8.62080 8.68032 9.20187 9.75652 11.24492 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.007576 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.109727 B = 3695.238416 C = 4682.862556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.085 3.915 3 C -0.182 4.182 4 N -0.538 5.538 5 C 0.201 3.799 6 C -0.495 4.495 7 H 0.060 0.940 8 C 0.054 3.946 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.286 1.286 14 C 0.287 3.713 15 N -0.596 5.596 16 C 0.123 3.877 17 C -0.094 4.094 18 H 0.125 0.875 19 C 0.463 3.537 20 O -0.458 6.458 21 O -0.525 6.525 22 C -0.141 4.141 23 C 0.517 3.483 24 O -0.521 6.521 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.043 0.957 32 H -0.009 1.009 33 H 0.033 0.967 34 H 0.258 0.742 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.410 0.590 40 H 0.104 0.896 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.587 -0.041 9.652 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 C -0.241 4.241 4 N -0.264 5.264 5 C 0.076 3.924 6 C -0.534 4.534 7 H 0.079 0.921 8 C -0.147 4.147 9 N -0.536 5.536 10 Si 0.721 3.279 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.213 1.213 14 C 0.076 3.924 15 N -0.330 5.330 16 C -0.001 4.001 17 C -0.114 4.114 18 H 0.143 0.857 19 C 0.302 3.698 20 O -0.340 6.340 21 O -0.338 6.338 22 C -0.181 4.181 23 C 0.303 3.697 24 O -0.396 6.396 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.009 0.991 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.269 0.731 40 H 0.122 0.878 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -14.113 0.250 9.481 17.004 hybrid contribution 0.973 -0.661 -1.122 1.625 sum -13.141 -0.411 8.359 15.580 Atomic orbital electron populations 1.21879 0.96116 1.01617 1.00132 1.21560 0.93609 0.91933 0.95366 1.22492 1.02609 0.98347 1.00670 1.62078 1.21749 1.42939 0.99637 1.19678 0.79714 0.95049 0.97918 1.21135 0.92179 1.24036 1.16038 0.92142 1.24968 0.96216 0.96767 0.96756 1.70004 0.98818 1.44265 1.40523 0.86525 0.78003 0.81314 0.82027 1.19795 1.21303 1.21275 1.21739 1.00258 0.87844 0.82533 1.48197 1.16922 1.42725 1.25201 1.21912 0.89070 0.90377 0.98763 1.21893 0.99846 0.90578 0.99037 0.85736 1.23033 0.76280 0.84352 0.86153 1.91020 1.41343 1.84938 1.16719 1.84455 1.80668 1.19890 1.48789 1.22318 0.98433 0.98192 0.99205 1.20603 0.83260 0.82898 0.82986 1.90769 1.23570 1.49502 1.75800 0.93814 0.93171 0.92203 0.88598 0.91787 0.93043 0.93750 0.99094 0.94926 0.93268 0.92440 0.90598 0.90157 0.88720 0.73115 0.87755 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.13 37.16 0.34 -1.73 16 2 C 0.08 1.60 2.75 -67.71 -0.19 1.41 16 3 C -0.18 -3.16 8.46 37.16 0.31 -2.85 16 4 N -0.54 -11.67 4.52 -231.97 -1.05 -12.72 16 5 C 0.20 5.56 4.47 -4.98 -0.02 5.53 16 6 C -0.50 -14.63 8.33 -34.44 -0.29 -14.92 16 7 H 0.06 1.78 7.21 -52.49 -0.38 1.40 16 8 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -28.49 13.29 55.43 0.74 -27.75 16 10 Si 0.89 22.91 29.54 -169.99 -5.02 17.89 16 11 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 C 0.29 5.33 4.32 -63.31 -0.27 5.06 16 15 N -0.60 -10.21 3.06 -175.80 -0.54 -10.75 16 16 C 0.12 1.53 6.56 -3.03 -0.02 1.51 16 17 C -0.09 -1.05 3.65 -90.04 -0.33 -1.38 16 18 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 19 C 0.46 6.69 7.39 36.01 0.27 6.96 16 20 O -0.46 -9.25 16.79 -18.75 -0.31 -9.57 16 21 O -0.52 -5.88 13.42 -39.24 -0.53 -6.41 16 22 C -0.14 -1.79 6.40 -26.74 -0.17 -1.96 16 23 C 0.52 9.63 7.36 -10.87 -0.08 9.55 16 24 O -0.52 -12.32 17.17 5.55 0.10 -12.23 16 25 H 0.04 0.57 6.53 -51.93 -0.34 0.23 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.10 2.07 6.61 -51.93 -0.34 1.73 16 29 H 0.06 1.30 6.52 -51.93 -0.34 0.97 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.68 6.97 -51.93 -0.36 0.32 16 32 H -0.01 -0.26 6.46 -51.93 -0.34 -0.59 16 33 H 0.03 1.03 7.04 -51.93 -0.37 0.66 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.06 1.20 7.18 -51.93 -0.37 0.83 16 36 H 0.08 1.16 5.75 -51.93 -0.30 0.86 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.35 7.50 -51.93 -0.39 0.96 16 39 H 0.41 3.34 9.10 45.56 0.41 3.75 16 40 H 0.10 1.39 7.90 -51.93 -0.41 0.98 16 41 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -38.79 335.34 -7.30 -46.09 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.19 Total: 1.69 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.55 Total: 8.72 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.85 Total: -51.23 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.75 Total: -28.21 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -38.79 -7.30 -46.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833496791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.519 kcal (2) G-P(sol) polarization free energy of solvation -38.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds