Wall clock time and date at job start Tue Mar 31 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46881 * 2 1 4 4 N 1.46901 * 109.47194 * 119.99815 * 2 1 3 5 5 C 1.46892 * 110.99860 * 167.16330 * 4 2 1 6 6 C 1.50702 * 109.47348 * 293.95611 * 5 4 2 7 7 H 1.07997 * 119.99837 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00443 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99626 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47208 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47311 * 119.99975 * 10 8 6 13 13 H 1.48501 * 109.47413 * 239.99947 * 10 8 6 14 14 C 1.46898 * 110.99922 * 291.12194 * 4 2 1 15 15 N 1.46503 * 109.47248 * 155.62858 * 14 4 2 16 16 C 1.46764 * 124.34692 * 282.22564 * 15 14 4 17 17 C 1.54657 * 105.38542 * 162.85385 * 16 15 14 18 18 H 1.08991 * 110.82453 * 143.77233 * 17 16 15 19 19 C 1.50708 * 111.22289 * 267.57752 * 17 16 15 20 20 O 1.20832 * 119.99794 * 23.39583 * 19 17 16 21 21 O 1.34222 * 119.99772 * 203.39766 * 19 17 16 22 22 C 1.54633 * 101.68169 * 25.75996 * 17 16 15 23 23 C 1.34413 * 124.35329 * 102.51667 * 15 14 4 24 24 O 1.21283 * 124.94108 * 0.39262 * 23 15 14 25 25 H 1.09003 * 109.47088 * 304.74996 * 1 2 3 26 26 H 1.08996 * 109.46942 * 64.75057 * 1 2 3 27 27 H 1.09004 * 109.46604 * 184.75071 * 1 2 3 28 28 H 1.08994 * 109.46882 * 240.00407 * 2 1 3 29 29 H 1.08996 * 109.46889 * 174.18119 * 3 2 1 30 30 H 1.08999 * 109.47006 * 294.18365 * 3 2 1 31 31 H 1.09006 * 109.46944 * 54.18562 * 3 2 1 32 32 H 1.09001 * 109.47199 * 53.95603 * 5 4 2 33 33 H 1.08999 * 109.47094 * 173.95872 * 5 4 2 34 34 H 0.97000 * 120.00382 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47054 * 275.62205 * 14 4 2 36 36 H 1.08999 * 109.47629 * 35.62105 * 14 4 2 37 37 H 1.09006 * 110.24369 * 281.98283 * 16 15 14 38 38 H 1.08997 * 110.24790 * 43.97752 * 16 15 14 39 39 H 0.96708 * 116.99493 * 180.02562 * 21 19 17 40 40 H 1.09007 * 110.48425 * 216.31235 * 22 17 16 41 41 H 1.08995 * 110.48493 * 93.67219 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1995 5 6 3.4559 -0.9816 1.0909 6 6 3.6855 -1.9773 -0.0168 7 1 2.8483 -2.3575 -0.5832 8 6 4.9644 -2.4034 -0.3064 9 7 5.9839 -1.9408 0.3837 10 14 5.2490 -3.6381 -1.6790 11 1 3.9479 -4.0003 -2.2966 12 1 6.1362 -3.0387 -2.7080 13 1 5.8890 -4.8575 -1.1232 14 6 1.7293 0.0849 2.4116 15 7 1.6762 -0.8139 3.5672 16 6 0.5364 -1.6800 3.8909 17 6 1.0872 -2.7283 4.8857 18 1 0.3391 -2.9797 5.6374 19 6 1.5628 -3.9649 4.1674 20 8 1.8835 -3.9021 3.0041 21 8 1.6300 -5.1359 4.8199 22 6 2.2738 -1.9656 5.5192 23 6 2.6627 -0.9473 4.4704 24 8 3.7122 -0.3398 4.4475 25 1 -0.3633 0.5858 0.8444 26 1 -0.3633 0.4383 -0.9295 27 1 -0.3633 -1.0242 0.0851 28 1 1.8934 -0.5137 -0.8900 29 1 3.1250 1.4443 0.1042 30 1 1.7642 1.9254 -0.9375 31 1 1.5941 1.9855 0.8334 32 1 3.9961 -0.0611 0.8698 33 1 3.8151 -1.3966 2.0326 34 1 6.8835 -2.2409 0.1802 35 1 2.5133 0.8267 2.5640 36 1 0.7694 0.5889 2.2988 37 1 -0.2599 -1.0978 4.3547 38 1 0.1692 -2.1725 2.9906 39 1 1.9415 -5.9012 4.3174 40 1 3.1026 -2.6456 5.7166 41 1 1.9609 -1.4676 6.4369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833496791.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:05 Heat of formation + Delta-G solvation = -140.655396 kcal Electronic energy + Delta-G solvation = -24288.684765 eV Core-core repulsion = 20781.773707 eV Total energy + Delta-G solvation = -3506.911058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98951 -40.55478 -39.09229 -37.45168 -36.79357 -34.92615 -33.74085 -31.91922 -29.10061 -28.70024 -27.99057 -26.36931 -25.00804 -23.93453 -21.57888 -21.16602 -20.04900 -19.11926 -18.39485 -18.14137 -17.79798 -16.85986 -16.71287 -16.51164 -16.22833 -15.90384 -15.61688 -14.94074 -14.66027 -14.34982 -14.25733 -14.12364 -13.96657 -13.61688 -13.41366 -13.25232 -12.86146 -12.81433 -12.77091 -12.61570 -12.55260 -12.40510 -12.37511 -12.09145 -11.78939 -11.52240 -11.38921 -11.24497 -10.88059 -10.65020 -9.76378 -8.99189 -8.20175 -6.30265 1.25951 1.31032 1.33516 1.46916 1.55531 2.10339 2.20850 2.36055 3.10703 3.28112 3.31251 3.42083 3.80046 4.04357 4.18488 4.23907 4.27931 4.41445 4.45746 4.53404 4.60604 4.73772 4.78023 4.79708 4.82067 4.96398 4.99336 5.05682 5.23028 5.25604 5.38351 5.52481 5.56957 5.66366 5.73672 6.04881 6.22808 6.42883 6.63984 6.86910 7.08639 7.20974 7.37888 8.90987 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.012469 B = 0.007576 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.109727 B = 3695.238416 C = 4682.862556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.076 3.924 3 C -0.173 4.173 4 N -0.539 5.539 5 C 0.231 3.769 6 C -0.506 4.506 7 H 0.059 0.941 8 C -0.007 4.007 9 N -0.939 5.939 10 Si 0.969 3.031 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.282 1.282 14 C 0.288 3.712 15 N -0.601 5.601 16 C 0.116 3.884 17 C -0.081 4.081 18 H 0.190 0.810 19 C 0.465 3.535 20 O -0.530 6.530 21 O -0.510 6.510 22 C -0.127 4.127 23 C 0.492 3.508 24 O -0.592 6.592 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.077 0.923 31 H 0.067 0.933 32 H -0.048 1.048 33 H -0.017 1.017 34 H 0.260 0.740 35 H 0.023 0.977 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.077 0.923 39 H 0.423 0.577 40 H 0.094 0.906 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.288 -0.731 10.483 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.032 4.032 3 C -0.231 4.231 4 N -0.264 5.264 5 C 0.105 3.895 6 C -0.545 4.545 7 H 0.077 0.923 8 C -0.204 4.204 9 N -0.581 5.581 10 Si 0.794 3.206 11 H -0.184 1.184 12 H -0.200 1.200 13 H -0.208 1.208 14 C 0.076 3.924 15 N -0.334 5.334 16 C -0.005 4.005 17 C -0.100 4.100 18 H 0.207 0.793 19 C 0.307 3.693 20 O -0.417 6.417 21 O -0.323 6.323 22 C -0.167 4.167 23 C 0.281 3.719 24 O -0.473 6.473 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.086 0.914 32 H -0.031 1.031 33 H 0.001 0.999 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.095 0.905 39 H 0.283 0.717 40 H 0.112 0.888 41 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.896 -0.478 10.337 20.672 hybrid contribution 2.090 -0.459 -1.342 2.526 sum -15.805 -0.936 8.994 18.209 Atomic orbital electron populations 1.21748 0.91720 1.02101 1.02624 1.21690 0.96890 0.91912 0.92740 1.22381 0.99678 0.97996 1.03079 1.62041 1.17390 1.44866 1.02141 1.19044 0.83222 0.92551 0.94685 1.21427 0.92379 1.24264 1.16398 0.92265 1.25994 0.95852 0.98945 0.99610 1.70176 0.99377 1.45933 1.42564 0.85339 0.78442 0.78288 0.78555 1.18450 1.20036 1.20788 1.21775 1.01110 0.87676 0.81824 1.48408 1.18266 1.42724 1.24009 1.22350 0.88490 0.90663 0.99031 1.22142 1.00221 0.88231 0.99382 0.79325 1.23845 0.74325 0.85778 0.85389 1.91010 1.44685 1.86054 1.19997 1.84432 1.79889 1.19747 1.48263 1.22343 0.98802 0.96477 0.99047 1.21805 0.82419 0.83181 0.84495 1.90717 1.26383 1.52371 1.77805 0.91246 0.90660 0.92741 0.92091 0.96288 0.90393 0.91366 1.03067 0.99900 0.93106 0.95926 0.86043 0.84345 0.90484 0.71658 0.88753 0.81465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.33 9.13 71.98 0.66 -2.67 16 2 C 0.08 2.92 2.75 44.92 0.12 3.05 16 3 C -0.17 -6.05 8.46 71.98 0.61 -5.44 16 4 N -0.54 -24.31 4.52 -887.81 -4.02 -28.33 16 5 C 0.23 13.81 4.47 85.56 0.38 14.20 16 6 C -0.51 -31.58 8.33 25.60 0.21 -31.37 16 7 H 0.06 3.62 7.21 -2.91 -0.02 3.60 16 8 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 9 N -0.94 -63.08 13.29 21.45 0.28 -62.80 16 10 Si 0.97 48.53 29.54 68.60 2.03 50.56 16 11 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 14 C 0.29 10.83 4.32 170.81 0.74 11.57 16 15 N -0.60 -20.44 3.06 -828.69 -2.53 -22.97 16 16 C 0.12 2.53 6.56 86.89 0.57 3.10 16 17 C -0.08 -1.50 3.65 -10.42 -0.04 -1.54 16 18 H 0.19 1.19 8.14 -2.39 -0.02 1.17 16 19 C 0.46 12.78 7.39 71.24 0.53 13.31 16 20 O -0.53 -21.97 16.79 21.95 0.37 -21.60 16 21 O -0.51 -10.30 13.42 -51.34 -0.69 -10.99 16 22 C -0.13 -2.93 6.40 30.59 0.20 -2.74 16 23 C 0.49 18.82 7.36 87.90 0.65 19.46 16 24 O -0.59 -30.18 17.17 -3.04 -0.05 -30.23 16 25 H 0.07 1.51 6.53 -2.39 -0.02 1.49 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 2.74 6.61 -2.39 -0.02 2.72 16 29 H 0.02 0.81 6.52 -2.39 -0.02 0.79 16 30 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.07 2.03 6.97 -2.38 -0.02 2.01 16 32 H -0.05 -3.18 6.46 -2.39 -0.02 -3.20 16 33 H -0.02 -1.19 7.04 -2.39 -0.02 -1.20 16 34 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 35 H 0.02 1.01 7.18 -2.39 -0.02 0.99 16 36 H 0.12 3.40 5.75 -2.39 -0.01 3.38 16 37 H 0.14 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.08 2.02 7.50 -2.39 -0.02 2.01 16 39 H 0.42 6.33 9.10 -74.05 -0.67 5.66 16 40 H 0.09 2.42 7.90 -2.38 -0.02 2.41 16 41 H 0.17 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -97.06 335.34 0.85 -96.21 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.38 Total: 9.22 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 5.09 Total: 20.93 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -6.26 Total: -114.09 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -0.37 Total: -62.82 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -97.06 0.85 -96.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833496791.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.443 kcal (2) G-P(sol) polarization free energy of solvation -97.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds