Wall clock time and date at job start Tue Mar 31 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47185 * 2 1 4 4 N 1.46899 * 109.46879 * 119.99875 * 2 1 3 5 5 C 1.46899 * 111.00013 * 73.53182 * 4 2 1 6 6 C 1.50704 * 109.46921 * 66.04493 * 5 4 2 7 7 H 1.07997 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99847 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99993 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47348 * 89.99565 * 10 8 6 12 12 H 1.48504 * 109.46873 * 209.99952 * 10 8 6 13 13 H 1.48500 * 109.46757 * 329.99212 * 10 8 6 14 14 C 1.46900 * 111.00399 * 309.57373 * 4 2 1 15 15 N 1.46495 * 109.47639 * 208.34535 * 14 4 2 16 16 C 1.46761 * 124.34901 * 259.80096 * 15 14 4 17 17 C 1.54483 * 105.53516 * 163.21434 * 16 15 14 18 18 H 1.08998 * 110.96819 * 267.08968 * 17 16 15 19 19 C 1.50691 * 111.00669 * 143.33731 * 17 16 15 20 20 O 1.20832 * 120.00081 * 6.14617 * 19 17 16 21 21 O 1.34225 * 120.00395 * 186.14995 * 19 17 16 22 22 C 1.54633 * 101.76271 * 25.19979 * 17 16 15 23 23 C 1.34419 * 124.34963 * 79.62425 * 15 14 4 24 24 O 1.21285 * 124.93763 * 0.42565 * 23 15 14 25 25 H 1.09001 * 109.46983 * 305.56847 * 1 2 3 26 26 H 1.09000 * 109.47453 * 65.56986 * 1 2 3 27 27 H 1.08996 * 109.47160 * 185.56993 * 1 2 3 28 28 H 1.08994 * 109.47006 * 239.99725 * 2 1 3 29 29 H 1.09007 * 109.47478 * 174.09954 * 3 2 1 30 30 H 1.08997 * 109.47411 * 294.10104 * 3 2 1 31 31 H 1.09009 * 109.47350 * 54.10207 * 3 2 1 32 32 H 1.09005 * 109.47195 * 186.04023 * 5 4 2 33 33 H 1.08997 * 109.47265 * 306.04424 * 5 4 2 34 34 H 0.96993 * 119.99679 * 179.97438 * 9 8 6 35 35 H 1.09009 * 109.46878 * 88.34842 * 14 4 2 36 36 H 1.08998 * 109.47042 * 328.34989 * 14 4 2 37 37 H 1.08997 * 110.39409 * 44.09985 * 16 15 14 38 38 H 1.09001 * 110.03653 * 282.13579 * 16 15 14 39 39 H 0.96697 * 117.00480 * 180.02562 * 21 19 17 40 40 H 1.09001 * 110.48747 * 216.52660 * 22 17 16 41 41 H 1.09004 * 110.59227 * 93.94422 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8285 -2.1444 1.0840 6 6 2.7024 -2.6797 -0.0210 7 1 3.3367 -2.0086 -0.5810 8 6 2.6923 -4.0264 -0.3168 9 7 1.9203 -4.8438 0.3656 10 14 3.7760 -4.6901 -1.6859 11 1 5.0972 -5.0759 -1.1285 12 1 3.1297 -5.8797 -2.2962 13 1 3.9625 -3.6423 -2.7215 14 6 1.3714 -0.1708 2.4101 15 7 2.2723 -0.3308 3.5541 16 6 2.1698 -1.4092 4.5444 17 6 3.5307 -1.4306 5.2751 18 1 4.2147 -2.1372 4.8051 19 6 3.3536 -1.7473 6.7377 20 8 2.2641 -2.0521 7.1622 21 8 4.4059 -1.6908 7.5689 22 6 4.0169 0.0241 5.0787 23 6 3.3011 0.4891 3.8299 24 8 3.6077 1.4631 3.1754 25 1 -0.3633 0.5978 0.8359 26 1 -0.3634 0.4250 -0.9356 27 1 -0.3633 -1.0228 0.0997 28 1 1.8933 -0.5138 -0.8899 29 1 3.1249 1.4443 0.1056 30 1 1.7655 1.9249 -0.9380 31 1 1.5930 1.9860 0.8325 32 1 2.0994 -2.6226 2.0254 33 1 0.7839 -2.3564 0.8561 34 1 1.9129 -5.7910 0.1572 35 1 0.4489 -0.7215 2.5943 36 1 1.1424 0.8860 2.2729 37 1 1.9924 -2.3639 4.0493 38 1 1.3666 -1.1939 5.2492 39 1 4.2433 -1.9028 8.4982 40 1 5.0966 0.0488 4.9313 41 1 3.7351 0.6410 5.9321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833496792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:09 Heat of formation + Delta-G solvation = -114.506934 kcal Electronic energy + Delta-G solvation = -23640.187860 eV Core-core repulsion = 20134.410684 eV Total energy + Delta-G solvation = -3505.777176 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.92806 -39.59329 -37.53963 -36.46223 -35.82258 -32.84351 -32.55374 -30.33308 -27.67664 -27.30203 -26.57826 -24.92741 -23.60720 -22.15711 -20.82489 -19.73937 -18.69230 -18.11524 -17.26596 -16.74303 -16.26153 -15.74738 -15.39225 -15.05425 -14.71282 -14.40606 -13.96778 -13.66041 -13.42383 -13.23565 -13.09955 -12.76843 -12.68398 -12.23192 -11.90685 -11.79424 -11.63980 -11.43483 -11.41786 -11.32870 -10.99676 -10.73904 -10.71583 -10.64712 -10.54064 -10.03012 -9.80779 -9.53848 -9.26317 -8.53281 -8.35298 -7.29815 -6.06927 -4.07418 1.98938 2.70508 2.88284 3.29633 3.36066 3.39900 3.40576 4.19057 4.37406 4.40807 4.84609 4.86678 5.01635 5.22983 5.28884 5.42280 5.52455 5.58077 5.70281 5.72764 5.78980 5.83331 5.87788 5.95980 6.13651 6.27637 6.28030 6.35092 6.53999 6.73626 6.86505 6.90930 7.24672 7.32700 7.46878 7.68201 7.77898 8.03902 8.18098 8.48214 8.54035 9.00362 9.56900 11.03536 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.005828 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.231936 B = 4803.528733 C = 6017.790485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 C -0.137 4.137 4 N -0.541 5.541 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.290 3.710 15 N -0.600 5.600 16 C 0.114 3.886 17 C -0.097 4.097 18 H 0.134 0.866 19 C 0.496 3.504 20 O -0.509 6.509 21 O -0.512 6.512 22 C -0.140 4.140 23 C 0.526 3.474 24 O -0.523 6.523 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.028 0.972 33 H -0.004 1.004 34 H 0.261 0.739 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.411 0.589 40 H 0.112 0.888 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 7.458 11.121 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.021 4.021 3 C -0.195 4.195 4 N -0.267 5.267 5 C 0.068 3.932 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C 0.079 3.921 15 N -0.335 5.335 16 C -0.009 4.009 17 C -0.116 4.116 18 H 0.152 0.848 19 C 0.337 3.663 20 O -0.397 6.397 21 O -0.324 6.324 22 C -0.181 4.181 23 C 0.312 3.688 24 O -0.399 6.399 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.014 0.986 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.270 0.730 40 H 0.131 0.869 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.179 7.898 10.449 13.151 hybrid contribution -0.379 -1.138 -0.089 1.203 sum 0.800 6.759 10.360 12.396 Atomic orbital electron populations 1.22501 0.98626 1.02026 1.00937 1.21543 0.91585 0.94235 0.94759 1.21830 1.02193 0.95617 0.99845 1.61962 1.56949 1.07640 1.00160 1.19807 0.95471 0.80378 0.97579 1.21148 1.23861 0.92555 1.16747 0.91920 1.24960 0.95808 0.96958 0.96747 1.69946 1.39113 1.03917 1.40872 0.86532 0.80506 0.78420 0.82170 1.20716 1.21368 1.19851 1.21742 0.87960 0.99841 0.82522 1.48422 1.31626 1.27511 1.25960 1.22019 0.94821 0.93161 0.90929 1.21898 1.01108 1.00061 0.88569 0.84785 1.22957 0.81482 0.72774 0.89050 1.90745 1.27156 1.43912 1.77842 1.84537 1.40640 1.82382 1.24795 1.22302 1.03313 0.93761 0.98674 1.20461 0.80188 0.82871 0.85303 1.90701 1.67309 1.27468 1.54406 0.93674 0.92898 0.91944 0.88630 0.91898 0.93469 0.93639 0.95423 0.98615 0.92966 0.92900 0.89955 0.88570 0.89756 0.73042 0.86938 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 8.52 37.16 0.32 -2.71 16 2 C 0.09 1.67 2.74 -67.71 -0.19 1.48 16 3 C -0.14 -2.33 9.13 37.16 0.34 -1.99 16 4 N -0.54 -11.26 4.52 -231.97 -1.05 -12.31 16 5 C 0.19 4.70 4.46 -4.97 -0.02 4.67 16 6 C -0.50 -13.66 8.32 -34.44 -0.29 -13.95 16 7 H 0.06 1.72 7.22 -52.49 -0.38 1.34 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 10 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.29 5.16 4.17 -63.32 -0.26 4.90 16 15 N -0.60 -9.91 3.17 -175.91 -0.56 -10.47 16 16 C 0.11 1.62 6.56 -3.12 -0.02 1.60 16 17 C -0.10 -1.14 3.65 -90.14 -0.33 -1.47 16 18 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 19 C 0.50 5.46 7.55 36.00 0.27 5.73 16 20 O -0.51 -7.01 16.33 -18.76 -0.31 -7.32 16 21 O -0.51 -4.16 13.41 -39.25 -0.53 -4.69 16 22 C -0.14 -1.66 6.39 -26.74 -0.17 -1.83 16 23 C 0.53 8.73 8.02 -10.87 -0.09 8.64 16 24 O -0.52 -10.48 17.73 5.55 0.10 -10.38 16 25 H 0.04 0.67 6.87 -51.93 -0.36 0.32 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.15 6.56 -51.93 -0.34 0.81 16 28 H 0.10 2.03 6.60 -51.93 -0.34 1.69 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.75 6.61 -51.92 -0.34 0.40 16 32 H 0.03 0.71 6.67 -51.93 -0.35 0.37 16 33 H 0.00 -0.10 6.50 -51.93 -0.34 -0.44 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.05 0.91 7.74 -51.92 -0.40 0.51 16 36 H 0.08 1.42 5.56 -51.93 -0.29 1.13 16 37 H 0.10 1.53 6.83 -51.93 -0.35 1.17 16 38 H 0.08 1.13 7.06 -51.93 -0.37 0.76 16 39 H 0.41 1.56 9.10 45.56 0.41 1.97 16 40 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.03 7.90 -51.93 -0.41 0.62 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -33.01 334.55 -7.22 -40.23 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.10 Total: 2.03 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.54 Total: 6.53 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.87 Total: -47.74 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.73 Total: -22.39 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.01 -7.22 -40.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833496792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.276 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds