Wall clock time and date at job start Tue Mar 31 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47185 * 2 1 4 4 N 1.46899 * 109.46879 * 119.99875 * 2 1 3 5 5 C 1.46899 * 111.00013 * 73.53182 * 4 2 1 6 6 C 1.50704 * 109.46921 * 66.04493 * 5 4 2 7 7 H 1.07997 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99847 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99993 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47348 * 89.99565 * 10 8 6 12 12 H 1.48504 * 109.46873 * 209.99952 * 10 8 6 13 13 H 1.48500 * 109.46757 * 329.99212 * 10 8 6 14 14 C 1.46900 * 111.00399 * 309.57373 * 4 2 1 15 15 N 1.46495 * 109.47639 * 208.34535 * 14 4 2 16 16 C 1.46761 * 124.34901 * 259.80096 * 15 14 4 17 17 C 1.54483 * 105.53516 * 163.21434 * 16 15 14 18 18 H 1.08998 * 110.96819 * 267.08968 * 17 16 15 19 19 C 1.50691 * 111.00669 * 143.33731 * 17 16 15 20 20 O 1.20832 * 120.00081 * 6.14617 * 19 17 16 21 21 O 1.34225 * 120.00395 * 186.14995 * 19 17 16 22 22 C 1.54633 * 101.76271 * 25.19979 * 17 16 15 23 23 C 1.34419 * 124.34963 * 79.62425 * 15 14 4 24 24 O 1.21285 * 124.93763 * 0.42565 * 23 15 14 25 25 H 1.09001 * 109.46983 * 305.56847 * 1 2 3 26 26 H 1.09000 * 109.47453 * 65.56986 * 1 2 3 27 27 H 1.08996 * 109.47160 * 185.56993 * 1 2 3 28 28 H 1.08994 * 109.47006 * 239.99725 * 2 1 3 29 29 H 1.09007 * 109.47478 * 174.09954 * 3 2 1 30 30 H 1.08997 * 109.47411 * 294.10104 * 3 2 1 31 31 H 1.09009 * 109.47350 * 54.10207 * 3 2 1 32 32 H 1.09005 * 109.47195 * 186.04023 * 5 4 2 33 33 H 1.08997 * 109.47265 * 306.04424 * 5 4 2 34 34 H 0.96993 * 119.99679 * 179.97438 * 9 8 6 35 35 H 1.09009 * 109.46878 * 88.34842 * 14 4 2 36 36 H 1.08998 * 109.47042 * 328.34989 * 14 4 2 37 37 H 1.08997 * 110.39409 * 44.09985 * 16 15 14 38 38 H 1.09001 * 110.03653 * 282.13579 * 16 15 14 39 39 H 0.96697 * 117.00480 * 180.02562 * 21 19 17 40 40 H 1.09001 * 110.48747 * 216.52660 * 22 17 16 41 41 H 1.09004 * 110.59227 * 93.94422 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.8285 -2.1444 1.0840 6 6 2.7024 -2.6797 -0.0210 7 1 3.3367 -2.0086 -0.5810 8 6 2.6923 -4.0264 -0.3168 9 7 1.9203 -4.8438 0.3656 10 14 3.7760 -4.6901 -1.6859 11 1 5.0972 -5.0759 -1.1285 12 1 3.1297 -5.8797 -2.2962 13 1 3.9625 -3.6423 -2.7215 14 6 1.3714 -0.1708 2.4101 15 7 2.2723 -0.3308 3.5541 16 6 2.1698 -1.4092 4.5444 17 6 3.5307 -1.4306 5.2751 18 1 4.2147 -2.1372 4.8051 19 6 3.3536 -1.7473 6.7377 20 8 2.2641 -2.0521 7.1622 21 8 4.4059 -1.6908 7.5689 22 6 4.0169 0.0241 5.0787 23 6 3.3011 0.4891 3.8299 24 8 3.6077 1.4631 3.1754 25 1 -0.3633 0.5978 0.8359 26 1 -0.3634 0.4250 -0.9356 27 1 -0.3633 -1.0228 0.0997 28 1 1.8933 -0.5138 -0.8899 29 1 3.1249 1.4443 0.1056 30 1 1.7655 1.9249 -0.9380 31 1 1.5930 1.9860 0.8325 32 1 2.0994 -2.6226 2.0254 33 1 0.7839 -2.3564 0.8561 34 1 1.9129 -5.7910 0.1572 35 1 0.4489 -0.7215 2.5943 36 1 1.1424 0.8860 2.2729 37 1 1.9924 -2.3639 4.0493 38 1 1.3666 -1.1939 5.2492 39 1 4.2433 -1.9028 8.4982 40 1 5.0966 0.0488 4.9313 41 1 3.7351 0.6410 5.9321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833496792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:08 Heat of formation + Delta-G solvation = -138.712078 kcal Electronic energy + Delta-G solvation = -23641.237474 eV Core-core repulsion = 20134.410684 eV Total energy + Delta-G solvation = -3506.826790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.97734 -40.71631 -39.10056 -37.44823 -36.94015 -34.90140 -33.79138 -31.97350 -29.04630 -28.79330 -27.99006 -26.43387 -24.80615 -24.01974 -21.80005 -21.11678 -20.07368 -19.04534 -18.38291 -18.19133 -18.03501 -16.92185 -16.74933 -16.47076 -16.17762 -15.91097 -15.44299 -15.09437 -14.69568 -14.57523 -14.25367 -14.10595 -14.01449 -13.95620 -13.32578 -13.23180 -12.85534 -12.80691 -12.68533 -12.57973 -12.51758 -12.42207 -12.34721 -12.11536 -11.76721 -11.68386 -11.48615 -11.29152 -10.82723 -10.59450 -9.79164 -8.97969 -8.18510 -6.26305 1.11825 1.40313 1.40914 1.51603 1.57984 1.82024 2.22139 2.40727 3.13721 3.14450 3.27018 3.41287 3.86305 3.92619 4.04849 4.17863 4.26562 4.36980 4.40247 4.47777 4.54805 4.56969 4.76785 4.79231 4.82654 4.85980 4.97134 5.04953 5.22322 5.26376 5.40346 5.45375 5.56767 5.58349 5.69955 6.07745 6.16171 6.45507 6.64461 6.89173 6.98143 7.20840 7.42430 8.91282 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013483 B = 0.005828 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.231936 B = 4803.528733 C = 6017.790485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 C -0.122 4.122 4 N -0.552 5.552 5 C 0.212 3.788 6 C -0.518 4.518 7 H 0.053 0.947 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.291 3.709 15 N -0.607 5.607 16 C 0.115 3.885 17 C -0.090 4.090 18 H 0.138 0.862 19 C 0.511 3.489 20 O -0.539 6.539 21 O -0.500 6.500 22 C -0.124 4.124 23 C 0.515 3.485 24 O -0.563 6.563 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.009 0.991 33 H -0.026 1.026 34 H 0.263 0.737 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.433 0.567 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 8.166 11.886 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 C -0.180 4.180 4 N -0.278 5.278 5 C 0.086 3.914 6 C -0.556 4.556 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.784 3.216 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.080 3.920 15 N -0.341 5.341 16 C -0.008 4.008 17 C -0.110 4.110 18 H 0.156 0.844 19 C 0.353 3.647 20 O -0.429 6.429 21 O -0.314 6.314 22 C -0.164 4.164 23 C 0.303 3.697 24 O -0.441 6.441 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.027 0.973 33 H -0.008 1.008 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.295 0.705 40 H 0.148 0.852 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.000 8.607 11.254 14.308 hybrid contribution -0.629 -1.335 -0.285 1.503 sum 1.372 7.272 10.969 13.232 Atomic orbital electron populations 1.22365 0.96649 1.01017 1.02939 1.21578 0.93235 0.94886 0.92919 1.21690 1.00556 0.94216 1.01548 1.61921 1.58168 1.05683 1.02026 1.19408 0.93492 0.82725 0.95742 1.21394 1.24025 0.92826 1.17379 0.92887 1.25726 0.97022 0.97217 0.98940 1.70051 1.40391 1.04194 1.42272 0.85544 0.78824 0.77801 0.79420 1.20125 1.20790 1.19387 1.21724 0.88314 1.00062 0.81912 1.48540 1.31588 1.28184 1.25773 1.22010 0.96945 0.91346 0.90520 1.21784 0.99406 1.00381 0.89413 0.84392 1.22548 0.81373 0.72008 0.88727 1.90751 1.28449 1.45484 1.78257 1.84477 1.39043 1.81647 1.26241 1.22266 1.03635 0.93561 0.96897 1.21263 0.79970 0.82133 0.86322 1.90673 1.68278 1.29092 1.56065 0.91770 0.90733 0.94401 0.91477 0.94127 0.90820 0.92944 0.97251 1.00849 0.92807 0.92600 0.89078 0.90877 0.88814 0.70471 0.85160 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.61 8.52 71.98 0.61 -4.99 16 2 C 0.08 3.16 2.74 44.91 0.12 3.29 16 3 C -0.12 -4.06 9.13 71.98 0.66 -3.40 16 4 N -0.55 -23.48 4.52 -887.82 -4.01 -27.49 16 5 C 0.21 10.75 4.46 85.56 0.38 11.13 16 6 C -0.52 -28.77 8.32 25.60 0.21 -28.55 16 7 H 0.05 2.99 7.22 -2.91 -0.02 2.97 16 8 C 0.01 0.52 5.46 84.65 0.46 0.98 16 9 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 10 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 C 0.29 10.44 4.17 170.81 0.71 11.15 16 15 N -0.61 -20.00 3.17 -829.06 -2.63 -22.63 16 16 C 0.11 3.25 6.56 86.83 0.57 3.82 16 17 C -0.09 -1.99 3.65 -10.48 -0.04 -2.03 16 18 H 0.14 2.97 8.14 -2.39 -0.02 2.95 16 19 C 0.51 10.11 7.55 71.23 0.54 10.65 16 20 O -0.54 -14.03 16.33 21.95 0.36 -13.67 16 21 O -0.50 -6.49 13.41 -51.37 -0.69 -7.18 16 22 C -0.12 -2.65 6.39 30.59 0.20 -2.45 16 23 C 0.51 16.69 8.02 87.89 0.71 17.39 16 24 O -0.56 -22.33 17.73 -3.05 -0.05 -22.38 16 25 H 0.06 1.84 6.87 -2.39 -0.02 1.82 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.04 1.42 6.56 -2.39 -0.02 1.40 16 28 H 0.07 2.93 6.60 -2.39 -0.02 2.92 16 29 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.05 1.65 6.61 -2.38 -0.02 1.64 16 32 H 0.01 0.51 6.67 -2.38 -0.02 0.49 16 33 H -0.03 -1.42 6.50 -2.39 -0.02 -1.43 16 34 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.06 1.96 7.74 -2.38 -0.02 1.94 16 36 H 0.09 3.09 5.56 -2.39 -0.01 3.08 16 37 H 0.07 2.42 6.83 -2.39 -0.02 2.40 16 38 H 0.09 2.48 7.06 -2.39 -0.02 2.46 16 39 H 0.43 1.79 9.10 -74.06 -0.67 1.12 16 40 H 0.13 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.13 2.14 7.90 -2.38 -0.02 2.12 16 Total: -1.00 -72.26 334.55 0.80 -71.47 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.38 Total: 12.65 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 5.13 Total: 16.97 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -6.36 Total: -103.89 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.38 Total: -43.23 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -72.26 0.80 -71.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833496792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.245 kcal (2) G-P(sol) polarization free energy of solvation -72.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds