Wall clock time and date at job start Tue Mar 31 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 C 1.53002 * 109.46777 * 239.99936 * 2 1 3 5 5 C 1.52995 * 109.47245 * 120.00427 * 2 1 3 6 6 N 1.46496 * 109.47540 * 63.92339 * 5 2 1 7 7 C 1.46509 * 119.99835 * 84.36762 * 6 5 2 8 8 C 1.50702 * 109.46882 * 90.00453 * 7 6 5 9 9 H 1.07998 * 119.99941 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99791 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00042 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99983 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47233 * 90.00012 * 12 10 8 14 14 H 1.48497 * 109.47263 * 209.99983 * 12 10 8 15 15 H 1.48496 * 109.47188 * 330.00397 * 12 10 8 16 16 C 1.34771 * 120.00309 * 264.37177 * 6 5 2 17 17 O 1.21289 * 120.00331 * 183.56113 * 16 6 5 18 18 C 1.50699 * 120.00114 * 3.55702 * 16 6 5 19 19 H 1.09005 * 115.54679 * 39.58541 * 18 16 6 20 20 C 1.52994 * 117.50081 * 253.91847 * 18 16 6 21 21 C 1.52990 * 60.00120 * 252.50748 * 20 18 16 22 22 H 1.08999 * 117.50055 * 107.48893 * 21 20 18 23 23 N 1.46501 * 117.50091 * 252.51006 * 21 20 18 24 24 O 1.21801 * 120.00468 * 188.61813 * 23 21 20 25 25 O 1.21802 * 119.99653 * 8.62267 * 23 21 20 26 26 H 1.09010 * 109.46779 * 305.36009 * 1 2 3 27 27 H 1.08996 * 109.47510 * 65.36014 * 1 2 3 28 28 H 1.09002 * 109.47189 * 185.36227 * 1 2 3 29 29 H 1.09002 * 109.47003 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47348 * 300.00055 * 3 2 1 31 31 H 1.09003 * 109.47344 * 60.00544 * 3 2 1 32 32 H 1.08997 * 109.47496 * 300.00315 * 4 2 1 33 33 H 1.09007 * 109.46745 * 60.00211 * 4 2 1 34 34 H 1.08994 * 109.47219 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46964 * 303.92206 * 5 2 1 36 36 H 1.08999 * 109.47184 * 183.92796 * 5 2 1 37 37 H 1.08998 * 109.46947 * 210.00306 * 7 6 5 38 38 H 1.08996 * 109.46909 * 330.00031 * 7 6 5 39 39 H 0.97001 * 119.99709 * 179.97438 * 11 10 8 40 40 H 1.09007 * 117.49807 * 359.97438 * 20 18 16 41 41 H 1.09000 * 117.50193 * 144.99172 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 7 1.6305 -2.1271 1.2028 7 6 2.4386 -3.1016 0.4654 8 6 3.4735 -3.6952 1.3862 9 1 3.5244 -3.3780 2.4173 10 6 4.3559 -4.6425 0.9119 11 7 5.2594 -5.1602 1.7153 12 14 4.2683 -5.1906 -0.8717 13 1 5.1425 -4.3217 -1.7001 14 1 4.7253 -6.5993 -0.9797 15 1 2.8675 -5.0862 -1.3534 16 6 0.5103 -2.5240 1.8384 17 8 0.2056 -3.6979 1.8546 18 6 -0.3639 -1.5092 2.5291 19 1 -0.4904 -0.5625 2.0038 20 6 -0.3272 -1.4692 4.0581 21 6 -1.5526 -2.0338 3.3369 22 1 -1.7025 -3.1130 3.3687 23 7 -2.7744 -1.2255 3.3450 24 8 -3.8173 -1.6937 2.9247 25 8 -2.7473 -0.0851 3.7721 26 1 -0.3633 0.5948 0.8382 27 1 -0.3634 0.4284 -0.9340 28 1 -0.3634 -1.0232 0.0960 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6765 -0.2074 -2.1393 34 1 3.1299 -0.7209 -1.2496 35 1 1.6204 -0.2497 2.1378 36 1 3.1277 -0.6607 1.2850 37 1 1.7942 -3.8938 0.0843 38 1 2.9357 -2.6050 -0.3679 39 1 5.8799 -5.8270 1.3817 40 1 0.3289 -2.1772 4.5645 41 1 -0.4296 -0.4963 4.5388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839713229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:35 Heat of formation + Delta-G solvation = -14.889484 kcal Electronic energy + Delta-G solvation = -23905.096511 eV Core-core repulsion = 20403.639072 eV Total energy + Delta-G solvation = -3501.457439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.34996 -40.21313 -37.74532 -36.78295 -36.19224 -34.14329 -32.50548 -29.29652 -27.79285 -27.47058 -27.13465 -25.92850 -24.32638 -22.40171 -21.84842 -19.68584 -19.08582 -18.56374 -18.33289 -17.29510 -17.11182 -16.58966 -15.78555 -15.40917 -14.57232 -14.41045 -14.07719 -13.98226 -13.46044 -13.23975 -12.79463 -12.54567 -12.47963 -12.03110 -11.88581 -11.75180 -11.67331 -11.55474 -11.41842 -11.35479 -11.21646 -11.12983 -11.02314 -10.91010 -10.81870 -10.63841 -10.34722 -10.18882 -9.67648 -9.43243 -8.69896 -7.95507 -6.20233 -4.19718 0.41716 1.50833 2.51767 3.13544 3.17540 3.26534 3.29001 3.42221 3.80315 4.11750 4.28686 4.38148 4.62281 4.76457 4.80276 4.93483 5.07766 5.13489 5.28206 5.36947 5.43914 5.49187 5.50319 5.70712 5.74068 5.92071 5.92332 5.96214 6.04392 6.18295 6.27654 6.30720 6.39717 6.54595 6.77582 7.07031 7.47333 7.58726 7.92300 8.30520 8.58218 8.81985 9.39154 10.92954 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.005794 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.026911 B = 4831.238739 C = 5776.979253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.148 4.148 5 C 0.115 3.885 6 N -0.573 5.573 7 C 0.210 3.790 8 C -0.532 4.532 9 H 0.075 0.925 10 C 0.075 3.925 11 N -0.895 5.895 12 Si 0.871 3.129 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.264 1.264 16 C 0.536 3.464 17 O -0.529 6.529 18 C -0.155 4.155 19 H 0.154 0.846 20 C -0.112 4.112 21 C -0.068 4.068 22 H 0.185 0.815 23 N 0.016 4.984 24 O -0.158 6.158 25 O -0.168 6.168 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.266 0.734 40 H 0.135 0.865 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.289 12.959 -0.842 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.089 4.089 3 C -0.196 4.196 4 C -0.205 4.205 5 C -0.009 4.009 6 N -0.302 5.302 7 C 0.090 3.910 8 C -0.570 4.570 9 H 0.093 0.907 10 C -0.128 4.128 11 N -0.533 5.533 12 Si 0.697 3.303 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.189 1.189 16 C 0.321 3.679 17 O -0.407 6.407 18 C -0.177 4.177 19 H 0.172 0.828 20 C -0.150 4.150 21 C -0.167 4.167 22 H 0.202 0.798 23 N 0.536 4.464 24 O -0.377 6.377 25 O -0.385 6.385 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.621 11.752 -0.848 14.033 hybrid contribution -0.164 -0.277 -0.900 0.956 sum -7.785 11.475 -1.749 13.977 Atomic orbital electron populations 1.22142 0.95364 1.01598 1.01579 1.21008 0.95373 0.95778 0.96759 1.21809 1.01427 0.94642 1.01707 1.22088 1.01467 1.01099 0.95861 1.21682 1.01707 0.81011 0.96458 1.47726 1.23024 1.09064 1.50371 1.19970 0.90879 0.87755 0.92393 1.21273 1.14029 1.23211 0.98478 0.90729 1.24828 0.94882 0.95503 0.97591 1.69883 1.19120 1.28728 1.35538 0.86925 0.79060 0.78753 0.85531 1.19922 1.20804 1.18862 1.18917 0.81619 0.87570 0.79842 1.90739 1.72288 1.17514 1.60118 1.23530 0.94622 1.02697 0.96809 0.82842 1.23650 0.93508 1.05081 0.92733 1.25038 0.80229 0.98904 1.12575 0.79816 1.43845 1.03579 1.01232 0.97720 1.94567 1.20376 1.75230 1.47492 1.94512 1.92577 1.03747 1.47678 0.92660 0.92182 0.92500 0.92135 0.92522 0.92598 0.91433 0.93159 0.91989 0.90973 0.89135 0.94246 0.94102 0.92439 0.84700 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 6.86 37.16 0.25 -1.45 16 2 C -0.09 -1.04 0.85 -154.51 -0.13 -1.17 16 3 C -0.14 -1.31 8.47 37.16 0.31 -0.99 16 4 C -0.15 -1.96 7.02 37.16 0.26 -1.70 16 5 C 0.12 1.61 4.55 -4.05 -0.02 1.59 16 6 N -0.57 -10.45 1.99 -175.06 -0.35 -10.80 16 7 C 0.21 4.69 2.98 -5.19 -0.02 4.68 16 8 C -0.53 -14.32 9.94 -34.44 -0.34 -14.67 16 9 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 11 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 12 Si 0.87 20.60 27.47 -169.99 -4.67 15.93 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 16 C 0.54 9.76 6.27 -10.99 -0.07 9.69 16 17 O -0.53 -11.92 15.89 5.55 0.09 -11.83 16 18 C -0.15 -2.06 3.76 -91.78 -0.34 -2.41 16 19 H 0.15 1.80 3.89 -51.93 -0.20 1.60 16 20 C -0.11 -1.23 9.72 -26.74 -0.26 -1.49 16 21 C -0.07 -0.89 6.42 -67.94 -0.44 -1.33 16 22 H 0.18 2.52 7.68 -51.93 -0.40 2.12 16 23 N 0.02 0.22 4.33 -4.90 -0.02 0.20 16 24 O -0.16 -2.45 19.24 -29.46 -0.57 -3.01 16 25 O -0.17 -2.34 18.28 -29.46 -0.54 -2.88 16 26 H 0.05 0.55 6.57 -51.92 -0.34 0.21 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.76 5.78 -51.93 -0.30 0.46 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 1.05 5.70 -51.93 -0.30 0.75 16 33 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 34 H 0.06 0.84 7.83 -51.93 -0.41 0.43 16 35 H 0.07 0.84 6.58 -51.93 -0.34 0.50 16 36 H 0.09 1.35 8.11 -51.93 -0.42 0.92 16 37 H 0.04 0.97 6.53 -51.93 -0.34 0.63 16 38 H 0.04 0.85 4.77 -51.93 -0.25 0.61 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.13 1.48 8.14 -51.92 -0.42 1.06 16 41 H 0.14 1.18 7.63 -51.93 -0.40 0.79 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -31.76 330.51 -7.00 -38.76 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.82 Total: 1.72 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.88 Total: -7.26 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.40 Total: -36.40 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.02 Total: -17.73 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.76 -7.00 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839713229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.871 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds