Wall clock time and date at job start Tue Mar 31 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47158 * 2 1 4 4 C 1.53002 * 109.46777 * 239.99936 * 2 1 3 5 5 C 1.52995 * 109.47245 * 120.00427 * 2 1 3 6 6 N 1.46496 * 109.47540 * 63.92339 * 5 2 1 7 7 C 1.46509 * 119.99835 * 84.36762 * 6 5 2 8 8 C 1.50702 * 109.46882 * 90.00453 * 7 6 5 9 9 H 1.07998 * 119.99941 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99791 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00042 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99983 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47233 * 90.00012 * 12 10 8 14 14 H 1.48497 * 109.47263 * 209.99983 * 12 10 8 15 15 H 1.48496 * 109.47188 * 330.00397 * 12 10 8 16 16 C 1.34771 * 120.00309 * 264.37177 * 6 5 2 17 17 O 1.21289 * 120.00331 * 183.56113 * 16 6 5 18 18 C 1.50699 * 120.00114 * 3.55702 * 16 6 5 19 19 H 1.09005 * 115.54679 * 39.58541 * 18 16 6 20 20 C 1.52994 * 117.50081 * 253.91847 * 18 16 6 21 21 C 1.52990 * 60.00120 * 252.50748 * 20 18 16 22 22 H 1.08999 * 117.50055 * 107.48893 * 21 20 18 23 23 N 1.46501 * 117.50091 * 252.51006 * 21 20 18 24 24 O 1.21801 * 120.00468 * 188.61813 * 23 21 20 25 25 O 1.21802 * 119.99653 * 8.62267 * 23 21 20 26 26 H 1.09010 * 109.46779 * 305.36009 * 1 2 3 27 27 H 1.08996 * 109.47510 * 65.36014 * 1 2 3 28 28 H 1.09002 * 109.47189 * 185.36227 * 1 2 3 29 29 H 1.09002 * 109.47003 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47348 * 300.00055 * 3 2 1 31 31 H 1.09003 * 109.47344 * 60.00544 * 3 2 1 32 32 H 1.08997 * 109.47496 * 300.00315 * 4 2 1 33 33 H 1.09007 * 109.46745 * 60.00211 * 4 2 1 34 34 H 1.08994 * 109.47219 * 179.97438 * 4 2 1 35 35 H 1.09001 * 109.46964 * 303.92206 * 5 2 1 36 36 H 1.08999 * 109.47184 * 183.92796 * 5 2 1 37 37 H 1.08998 * 109.46947 * 210.00306 * 7 6 5 38 38 H 1.08996 * 109.46909 * 330.00031 * 7 6 5 39 39 H 0.97001 * 119.99709 * 179.97438 * 11 10 8 40 40 H 1.09007 * 117.49807 * 359.97438 * 20 18 16 41 41 H 1.09000 * 117.50193 * 144.99172 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2491 6 7 1.6305 -2.1271 1.2028 7 6 2.4386 -3.1016 0.4654 8 6 3.4735 -3.6952 1.3862 9 1 3.5244 -3.3780 2.4173 10 6 4.3559 -4.6425 0.9119 11 7 5.2594 -5.1602 1.7153 12 14 4.2683 -5.1906 -0.8717 13 1 5.1425 -4.3217 -1.7001 14 1 4.7253 -6.5993 -0.9797 15 1 2.8675 -5.0862 -1.3534 16 6 0.5103 -2.5240 1.8384 17 8 0.2056 -3.6979 1.8546 18 6 -0.3639 -1.5092 2.5291 19 1 -0.4904 -0.5625 2.0038 20 6 -0.3272 -1.4692 4.0581 21 6 -1.5526 -2.0338 3.3369 22 1 -1.7025 -3.1130 3.3687 23 7 -2.7744 -1.2255 3.3450 24 8 -3.8173 -1.6937 2.9247 25 8 -2.7473 -0.0851 3.7721 26 1 -0.3633 0.5948 0.8382 27 1 -0.3634 0.4284 -0.9340 28 1 -0.3634 -1.0232 0.0960 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6765 -0.2074 -2.1393 34 1 3.1299 -0.7209 -1.2496 35 1 1.6204 -0.2497 2.1378 36 1 3.1277 -0.6607 1.2850 37 1 1.7942 -3.8938 0.0843 38 1 2.9357 -2.6050 -0.3679 39 1 5.8799 -5.8270 1.3817 40 1 0.3289 -2.1772 4.5645 41 1 -0.4296 -0.4963 4.5388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839713229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:35 Heat of formation + Delta-G solvation = -34.099259 kcal Electronic energy + Delta-G solvation = -23905.929510 eV Core-core repulsion = 20403.639072 eV Total energy + Delta-G solvation = -3502.290438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.46686 -41.54526 -38.87763 -37.97441 -37.37370 -35.69492 -34.43720 -30.94824 -29.01249 -28.40257 -28.14837 -27.12870 -25.75644 -23.70334 -23.23716 -20.89560 -20.16587 -19.70296 -19.48436 -19.18773 -18.39660 -17.87046 -17.30414 -16.79372 -16.08439 -15.70461 -15.24520 -15.13970 -14.79192 -14.50154 -14.32761 -13.83184 -13.76640 -13.46158 -13.05730 -12.88246 -12.82487 -12.68957 -12.61987 -12.51654 -12.46585 -12.33649 -12.26351 -12.23449 -12.04715 -11.86029 -11.77141 -11.61879 -11.46413 -10.95425 -10.82861 -9.50796 -8.36735 -6.40775 -0.70701 0.40484 1.25688 1.27885 1.32739 1.41538 1.90881 2.17994 2.27196 2.67124 2.97398 3.06851 3.24887 3.53815 3.79827 3.82578 3.94886 4.08099 4.39644 4.42337 4.51300 4.52977 4.66046 4.68066 4.80394 4.84777 4.89060 4.91650 5.03266 5.07657 5.13509 5.16353 5.32279 5.36535 5.41070 5.50383 5.56789 6.18032 6.45379 6.48581 6.60708 7.08010 7.24941 8.79848 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.016702 B = 0.005794 C = 0.004846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.026911 B = 4831.238739 C = 5776.979253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.133 4.133 4 C -0.151 4.151 5 C 0.108 3.892 6 N -0.576 5.576 7 C 0.222 3.778 8 C -0.533 4.533 9 H 0.035 0.965 10 C 0.016 3.984 11 N -0.942 5.942 12 Si 0.935 3.065 13 H -0.250 1.250 14 H -0.283 1.283 15 H -0.258 1.258 16 C 0.530 3.470 17 O -0.585 6.585 18 C -0.152 4.152 19 H 0.178 0.822 20 C -0.083 4.083 21 C -0.076 4.076 22 H 0.171 0.829 23 N 0.020 4.980 24 O -0.209 6.209 25 O -0.130 6.130 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.014 0.986 38 H 0.062 0.938 39 H 0.268 0.732 40 H 0.134 0.866 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 16.040 -1.420 18.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 C -0.190 4.190 4 C -0.209 4.209 5 C -0.015 4.015 6 N -0.304 5.304 7 C 0.101 3.899 8 C -0.572 4.572 9 H 0.053 0.947 10 C -0.182 4.182 11 N -0.582 5.582 12 Si 0.758 3.242 13 H -0.174 1.174 14 H -0.209 1.209 15 H -0.182 1.182 16 C 0.317 3.683 17 O -0.466 6.466 18 C -0.173 4.173 19 H 0.195 0.805 20 C -0.120 4.120 21 C -0.175 4.175 22 H 0.188 0.812 23 N 0.540 4.460 24 O -0.415 6.415 25 O -0.359 6.359 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.032 0.968 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.153 0.847 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.190 14.798 -1.478 16.977 hybrid contribution 0.049 -1.142 -0.602 1.292 sum -8.141 13.655 -2.080 16.033 Atomic orbital electron populations 1.22134 0.94701 1.00477 1.03248 1.20969 0.95808 0.96917 0.94579 1.21774 1.01377 0.92602 1.03275 1.22096 1.01093 0.99902 0.97762 1.22016 1.01419 0.78782 0.99236 1.47728 1.22681 1.10236 1.49711 1.19587 0.89705 0.88335 0.92311 1.21533 1.14977 1.23213 0.97448 0.94702 1.25728 0.94493 0.95635 1.02366 1.70030 1.20416 1.29870 1.37907 0.85891 0.79689 0.78451 0.80121 1.17363 1.20898 1.18200 1.19657 0.81715 0.87832 0.79107 1.90708 1.73637 1.20215 1.62049 1.23349 0.93936 1.01744 0.98283 0.80497 1.23935 0.90931 1.06557 0.90614 1.24991 0.80287 0.98527 1.13725 0.81186 1.43889 1.03548 1.01163 0.97362 1.94599 1.21056 1.75744 1.50075 1.94473 1.92417 1.03454 1.45529 0.90532 0.90893 0.95064 0.92280 0.91269 0.90749 0.94312 0.91157 0.92595 0.87930 0.90278 0.96776 0.92026 0.92303 0.84746 0.80901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 6.86 71.98 0.49 -2.42 16 2 C -0.08 -1.71 0.85 -52.18 -0.04 -1.75 16 3 C -0.13 -1.97 8.47 71.98 0.61 -1.36 16 4 C -0.15 -3.75 7.02 71.98 0.51 -3.24 16 5 C 0.11 2.81 4.55 86.38 0.39 3.20 16 6 N -0.58 -21.02 1.99 -826.16 -1.64 -22.66 16 7 C 0.22 10.14 2.98 85.63 0.26 10.40 16 8 C -0.53 -29.75 9.94 25.60 0.25 -29.49 16 9 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 10 C 0.02 0.93 5.47 84.65 0.46 1.39 16 11 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 12 Si 0.94 43.00 27.47 68.60 1.88 44.89 16 13 H -0.25 -10.46 7.11 99.48 0.71 -9.76 16 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 15 H -0.26 -11.50 6.54 99.48 0.65 -10.85 16 16 C 0.53 19.42 6.27 87.66 0.55 19.97 16 17 O -0.59 -27.47 15.89 -3.06 -0.05 -27.52 16 18 C -0.15 -3.75 3.76 -11.54 -0.04 -3.80 16 19 H 0.18 3.51 3.89 -2.38 -0.01 3.51 16 20 C -0.08 -1.57 9.72 30.59 0.30 -1.27 16 21 C -0.08 -1.88 6.42 44.99 0.29 -1.60 16 22 H 0.17 4.79 7.68 -2.39 -0.02 4.77 16 23 N 0.02 0.53 4.33 -169.41 -0.73 -0.20 16 24 O -0.21 -6.43 19.24 18.88 0.36 -6.06 16 25 O -0.13 -3.12 18.28 18.88 0.35 -2.77 16 26 H 0.08 1.16 6.57 -2.38 -0.02 1.15 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 0.78 5.78 -2.39 -0.01 0.76 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.04 1.17 5.70 -2.39 -0.01 1.16 16 33 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.05 1.42 7.83 -2.39 -0.02 1.41 16 35 H 0.10 2.03 6.58 -2.39 -0.02 2.02 16 36 H 0.08 2.26 8.11 -2.39 -0.02 2.24 16 37 H 0.01 0.72 6.53 -2.39 -0.02 0.71 16 38 H 0.06 2.57 4.77 -2.39 -0.01 2.56 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.13 2.67 8.14 -2.38 -0.02 2.65 16 41 H 0.17 2.06 7.63 -2.39 -0.02 2.04 16 Total: -1.00 -73.19 330.51 5.48 -67.71 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.98 Total: 14.03 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.02 Total: -9.97 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -2.08 Total: -80.31 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: 0.66 Total: -36.35 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Total: -73.19 5.48 -67.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839713229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.612 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds