Wall clock time and date at job start Tue Mar 31 2020 05:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46573 * 2 1 4 4 C 1.52998 * 109.47546 * 300.00029 * 3 2 1 5 5 C 1.53005 * 109.46573 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46977 * 60.00566 * 3 2 1 7 7 C 1.46503 * 119.99781 * 239.07733 * 6 3 2 8 8 C 1.50708 * 109.47067 * 269.99994 * 7 6 3 9 9 H 1.08005 * 119.99894 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99963 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00299 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00096 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46971 * 60.00364 * 12 10 8 14 14 H 1.48496 * 109.47293 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47122 * 300.00555 * 12 10 8 16 16 C 1.34770 * 120.00340 * 59.08015 * 6 3 2 17 17 O 1.21283 * 120.00295 * 5.29088 * 16 6 3 18 18 C 1.50709 * 120.00089 * 185.29382 * 16 6 3 19 19 H 1.09000 * 115.54925 * 29.42737 * 18 16 6 20 20 C 1.53003 * 117.49735 * 243.75727 * 18 16 6 21 21 C 1.52994 * 117.49755 * 175.09689 * 18 16 6 22 22 H 1.09002 * 117.49976 * 0.02562 * 21 18 16 23 23 N 1.46501 * 117.50039 * 215.00397 * 21 18 16 24 24 O 1.21797 * 120.00714 * 120.00258 * 23 21 18 25 25 O 1.21805 * 119.99724 * 300.00203 * 23 21 18 26 26 H 1.09008 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47548 * 299.99490 * 1 2 3 28 28 H 1.09001 * 109.47701 * 59.99797 * 1 2 3 29 29 H 1.09000 * 109.46845 * 240.00273 * 2 1 3 30 30 H 1.08999 * 109.47005 * 120.00453 * 2 1 3 31 31 H 1.08997 * 109.46918 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47037 * 300.00168 * 4 3 2 33 33 H 1.09002 * 109.46865 * 60.00069 * 4 3 2 34 34 H 1.08995 * 109.46982 * 306.20013 * 5 3 2 35 35 H 1.08996 * 109.47115 * 66.20594 * 5 3 2 36 36 H 1.09002 * 109.46901 * 186.20256 * 5 3 2 37 37 H 1.09002 * 109.47276 * 29.99799 * 7 6 3 38 38 H 1.09000 * 109.47319 * 150.00414 * 7 6 3 39 39 H 0.96998 * 120.00704 * 179.97438 * 11 10 8 40 40 H 1.08997 * 117.49679 * 359.97438 * 20 18 16 41 41 H 1.08997 * 117.49636 * 144.99713 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 3.5699 1.4425 -0.0006 6 7 1.5516 2.1330 1.1962 7 6 0.7259 3.3357 1.0620 8 6 1.6135 4.5533 1.0291 9 1 2.6855 4.4422 1.1006 10 6 1.0572 5.8088 0.9067 11 7 -0.2480 5.9441 0.8191 12 14 2.1573 7.3180 0.8667 13 1 3.0861 7.2231 -0.2882 14 1 1.3205 8.5371 0.7305 15 1 2.9400 7.3936 2.1264 16 6 1.8619 1.6619 2.4202 17 8 2.6229 0.7244 2.5342 18 6 1.2632 2.2999 3.6473 19 1 0.2790 2.7481 3.5114 20 6 2.2203 2.9806 4.6279 21 6 1.5626 1.6492 4.9992 22 1 2.1930 0.7599 5.0012 23 7 0.5045 1.6762 6.0121 24 8 0.0597 0.6329 6.4562 25 8 0.0696 2.7420 6.4102 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8935 3.1913 -1.2493 32 1 1.8932 1.6500 -2.1391 33 1 0.4399 2.1637 -1.2492 34 1 3.9336 0.8355 0.8284 35 1 3.9329 1.0281 -0.9411 36 1 3.9333 2.4642 0.1104 37 1 0.1508 3.2804 0.1377 38 1 0.0449 3.4055 1.9102 39 1 -0.6395 6.8274 0.7334 40 1 3.2829 2.9667 4.3857 41 1 1.8656 3.8767 5.1371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841188040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:39 Heat of formation + Delta-G solvation = -21.513959 kcal Electronic energy + Delta-G solvation = -24150.375956 eV Core-core repulsion = 20648.631258 eV Total energy + Delta-G solvation = -3501.744698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.09230 -40.16603 -37.57858 -36.32743 -35.62768 -33.79230 -32.16701 -30.11751 -27.96679 -27.61605 -26.40294 -24.43880 -23.32696 -22.61400 -22.02853 -20.26496 -18.97270 -18.19507 -17.79081 -17.13369 -16.69801 -16.25951 -15.65025 -14.90477 -14.67897 -14.35592 -14.09937 -13.61951 -12.92500 -12.79575 -12.55998 -12.40850 -12.02958 -11.96358 -11.64231 -11.43659 -11.33590 -11.26846 -11.24083 -11.13985 -11.09017 -10.90507 -10.81615 -10.71591 -10.63286 -10.46595 -10.35792 -10.15234 -9.79806 -9.17826 -8.64682 -7.90780 -6.29051 -4.36879 0.65087 1.75900 2.69112 3.15993 3.22696 3.23272 3.35370 3.59349 4.09816 4.22356 4.48372 4.66434 4.92250 5.04671 5.19075 5.31257 5.36926 5.44327 5.62381 5.65116 5.77715 5.85982 5.92784 6.05635 6.06453 6.17504 6.32069 6.33939 6.45116 6.51586 6.53629 6.67828 6.72078 6.85946 7.06153 7.36005 7.64234 7.81832 7.91531 8.09243 8.58140 8.74120 9.30979 10.77673 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.007898 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.413827 B = 3544.148176 C = 5157.382694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.180 3.820 4 C -0.152 4.152 5 C -0.159 4.159 6 N -0.568 5.568 7 C 0.229 3.771 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.068 3.932 11 N -0.888 5.888 12 Si 0.895 3.105 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.546 3.454 17 O -0.563 6.563 18 C -0.122 4.122 19 H 0.147 0.853 20 C -0.097 4.097 21 C -0.078 4.078 22 H 0.180 0.820 23 N 0.016 4.984 24 O -0.168 6.168 25 O -0.163 6.163 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.034 0.966 39 H 0.267 0.733 40 H 0.129 0.871 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 -6.793 0.367 7.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.096 3.904 4 C -0.209 4.209 5 C -0.217 4.217 6 N -0.297 5.297 7 C 0.109 3.891 8 C -0.575 4.575 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.201 1.201 16 C 0.333 3.667 17 O -0.445 6.445 18 C -0.144 4.144 19 H 0.165 0.835 20 C -0.135 4.135 21 C -0.178 4.178 22 H 0.197 0.803 23 N 0.536 4.464 24 O -0.384 6.384 25 O -0.381 6.381 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.192 -7.139 -0.179 8.280 hybrid contribution 0.187 1.028 0.137 1.054 sum 4.379 -6.111 -0.041 7.518 Atomic orbital electron populations 1.21766 0.95962 1.00699 1.02136 1.21941 0.96094 0.96467 1.02767 1.20267 0.93807 0.91176 0.85156 1.22152 1.01798 1.02120 0.94847 1.22199 0.94872 1.02701 1.01905 1.48225 1.50193 1.27972 1.03355 1.19649 0.90343 0.80128 0.98947 1.21344 0.93554 0.90491 1.52137 0.92135 1.24912 0.95016 0.98988 0.94645 1.69891 1.09777 1.24227 1.48668 0.86601 0.80408 0.81937 0.78813 1.20174 1.21100 1.20060 1.18899 0.81260 0.82807 0.83767 1.90585 1.37222 1.30131 1.86564 1.22860 1.04483 1.00056 0.87023 0.83500 1.23498 1.00387 0.92512 0.97113 1.25108 0.95307 1.05114 0.92267 0.80250 1.43862 1.01226 1.00247 1.01032 1.94528 1.61582 1.22152 1.60185 1.94548 1.62070 1.19076 1.62422 0.93458 0.92882 0.92495 0.91792 0.90331 0.90014 0.92690 0.91727 0.90927 0.92860 0.92207 0.93350 0.94856 0.92305 0.85259 0.84681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.40 37.16 0.35 -1.82 16 2 C -0.13 -2.05 4.76 -26.73 -0.13 -2.17 16 3 C 0.18 3.01 0.73 -131.82 -0.10 2.91 16 4 C -0.15 -2.46 6.87 37.16 0.26 -2.20 16 5 C -0.16 -2.57 8.30 37.16 0.31 -2.27 16 6 N -0.57 -10.59 1.64 -160.17 -0.26 -10.85 16 7 C 0.23 4.88 4.41 -5.19 -0.02 4.86 16 8 C -0.54 -12.66 8.65 -34.44 -0.30 -12.96 16 9 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.09 13.29 55.43 0.74 -22.35 16 12 Si 0.90 19.49 29.54 -169.99 -5.02 14.46 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 C 0.55 9.99 6.85 -10.98 -0.08 9.92 16 17 O -0.56 -10.74 12.59 5.56 0.07 -10.67 16 18 C -0.12 -2.04 5.22 -91.77 -0.48 -2.52 16 19 H 0.15 2.62 6.34 -51.93 -0.33 2.29 16 20 C -0.10 -1.39 9.72 -26.69 -0.26 -1.65 16 21 C -0.08 -1.18 6.43 -67.89 -0.44 -1.61 16 22 H 0.18 2.56 7.68 -51.93 -0.40 2.16 16 23 N 0.02 0.27 4.33 -4.86 -0.02 0.25 16 24 O -0.17 -2.91 19.24 -29.46 -0.57 -3.48 16 25 O -0.16 -2.83 18.28 -29.46 -0.54 -3.37 16 26 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.05 0.86 7.60 -51.93 -0.39 0.47 16 28 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.32 6.29 -51.93 -0.33 1.00 16 31 H 0.08 1.51 7.13 -51.93 -0.37 1.14 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 1.06 5.21 -51.93 -0.27 0.79 16 34 H 0.07 1.25 6.27 -51.93 -0.33 0.92 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.09 5.75 -51.93 -0.30 0.79 16 38 H 0.03 0.75 5.86 -51.93 -0.30 0.45 16 39 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.14 1.86 7.63 -51.93 -0.40 1.46 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -26.03 334.20 -7.38 -33.41 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.83 Total: 5.48 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -0.98 Total: -7.93 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.45 Total: -32.95 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -1.04 Total: -17.51 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.03 -7.38 -33.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841188040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.896 kcal (2) G-P(sol) polarization free energy of solvation -26.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds