Wall clock time and date at job start Tue Mar 31 2020 05:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46573 * 2 1 4 4 C 1.52998 * 109.47546 * 300.00029 * 3 2 1 5 5 C 1.53005 * 109.46573 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46977 * 60.00566 * 3 2 1 7 7 C 1.46503 * 119.99781 * 239.07733 * 6 3 2 8 8 C 1.50708 * 109.47067 * 269.99994 * 7 6 3 9 9 H 1.08005 * 119.99894 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99963 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00299 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00096 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46971 * 60.00364 * 12 10 8 14 14 H 1.48496 * 109.47293 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47122 * 300.00555 * 12 10 8 16 16 C 1.34770 * 120.00340 * 59.08015 * 6 3 2 17 17 O 1.21283 * 120.00295 * 5.29088 * 16 6 3 18 18 C 1.50709 * 120.00089 * 185.29382 * 16 6 3 19 19 H 1.09000 * 115.54925 * 29.42737 * 18 16 6 20 20 C 1.53003 * 117.49735 * 243.75727 * 18 16 6 21 21 C 1.52994 * 117.49755 * 175.09689 * 18 16 6 22 22 H 1.09002 * 117.49976 * 0.02562 * 21 18 16 23 23 N 1.46501 * 117.50039 * 215.00397 * 21 18 16 24 24 O 1.21797 * 120.00714 * 120.00258 * 23 21 18 25 25 O 1.21805 * 119.99724 * 300.00203 * 23 21 18 26 26 H 1.09008 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47548 * 299.99490 * 1 2 3 28 28 H 1.09001 * 109.47701 * 59.99797 * 1 2 3 29 29 H 1.09000 * 109.46845 * 240.00273 * 2 1 3 30 30 H 1.08999 * 109.47005 * 120.00453 * 2 1 3 31 31 H 1.08997 * 109.46918 * 180.02562 * 4 3 2 32 32 H 1.08994 * 109.47037 * 300.00168 * 4 3 2 33 33 H 1.09002 * 109.46865 * 60.00069 * 4 3 2 34 34 H 1.08995 * 109.46982 * 306.20013 * 5 3 2 35 35 H 1.08996 * 109.47115 * 66.20594 * 5 3 2 36 36 H 1.09002 * 109.46901 * 186.20256 * 5 3 2 37 37 H 1.09002 * 109.47276 * 29.99799 * 7 6 3 38 38 H 1.09000 * 109.47319 * 150.00414 * 7 6 3 39 39 H 0.96998 * 120.00704 * 179.97438 * 11 10 8 40 40 H 1.08997 * 117.49679 * 359.97438 * 20 18 16 41 41 H 1.08997 * 117.49636 * 144.99713 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 3.5699 1.4425 -0.0006 6 7 1.5516 2.1330 1.1962 7 6 0.7259 3.3357 1.0620 8 6 1.6135 4.5533 1.0291 9 1 2.6855 4.4422 1.1006 10 6 1.0572 5.8088 0.9067 11 7 -0.2480 5.9441 0.8191 12 14 2.1573 7.3180 0.8667 13 1 3.0861 7.2231 -0.2882 14 1 1.3205 8.5371 0.7305 15 1 2.9400 7.3936 2.1264 16 6 1.8619 1.6619 2.4202 17 8 2.6229 0.7244 2.5342 18 6 1.2632 2.2999 3.6473 19 1 0.2790 2.7481 3.5114 20 6 2.2203 2.9806 4.6279 21 6 1.5626 1.6492 4.9992 22 1 2.1930 0.7599 5.0012 23 7 0.5045 1.6762 6.0121 24 8 0.0597 0.6329 6.4562 25 8 0.0696 2.7420 6.4102 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8935 3.1913 -1.2493 32 1 1.8932 1.6500 -2.1391 33 1 0.4399 2.1637 -1.2492 34 1 3.9336 0.8355 0.8284 35 1 3.9329 1.0281 -0.9411 36 1 3.9333 2.4642 0.1104 37 1 0.1508 3.2804 0.1377 38 1 0.0449 3.4055 1.9102 39 1 -0.6395 6.8274 0.7334 40 1 3.2829 2.9667 4.3857 41 1 1.8656 3.8767 5.1371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841188040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:38 Heat of formation + Delta-G solvation = -32.929924 kcal Electronic energy + Delta-G solvation = -24150.870990 eV Core-core repulsion = 20648.631258 eV Total energy + Delta-G solvation = -3502.239731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.42355 -41.58938 -38.90353 -37.69985 -37.02143 -35.43689 -33.83171 -31.37430 -29.56512 -28.96205 -27.91331 -25.76843 -24.87898 -24.05494 -23.30921 -21.60988 -20.30096 -19.54878 -19.16632 -18.67732 -18.34765 -17.73273 -17.05495 -16.45750 -16.24795 -15.71797 -15.47934 -14.89429 -14.33194 -14.25689 -14.09792 -13.74956 -13.48319 -13.39202 -12.95275 -12.82149 -12.80982 -12.76228 -12.63635 -12.53628 -12.51182 -12.29260 -12.20696 -12.16147 -12.06355 -12.02279 -11.76170 -11.60966 -11.42224 -10.68230 -10.47145 -9.45397 -8.17799 -6.30526 -0.73561 0.46194 1.30999 1.43025 1.46022 1.51520 1.97163 2.27033 2.42239 2.79407 3.13244 3.20419 3.34884 3.59490 3.91236 4.03285 4.10083 4.15639 4.38138 4.46783 4.56658 4.60642 4.66318 4.77407 4.82253 4.95395 4.97754 5.04014 5.11086 5.16924 5.18148 5.24702 5.33241 5.46253 5.53056 5.70077 5.88134 6.07615 6.42760 6.52037 6.81836 7.17277 7.41103 8.87485 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.011268 B = 0.007898 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.413827 B = 3544.148176 C = 5157.382694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.170 3.830 4 C -0.144 4.144 5 C -0.151 4.151 6 N -0.571 5.571 7 C 0.245 3.755 8 C -0.532 4.532 9 H 0.055 0.945 10 C 0.026 3.974 11 N -0.919 5.919 12 Si 0.947 3.053 13 H -0.274 1.274 14 H -0.288 1.288 15 H -0.270 1.270 16 C 0.546 3.454 17 O -0.570 6.570 18 C -0.142 4.142 19 H 0.132 0.868 20 C -0.082 4.082 21 C -0.064 4.064 22 H 0.193 0.807 23 N 0.017 4.983 24 O -0.175 6.175 25 O -0.174 6.174 26 H 0.064 0.936 27 H 0.028 0.972 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.019 0.981 39 H 0.266 0.734 40 H 0.147 0.853 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.665 -7.373 -0.081 8.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.086 3.914 4 C -0.202 4.202 5 C -0.209 4.209 6 N -0.300 5.300 7 C 0.125 3.875 8 C -0.570 4.570 9 H 0.073 0.927 10 C -0.175 4.175 11 N -0.558 5.558 12 Si 0.773 3.227 13 H -0.199 1.199 14 H -0.214 1.214 15 H -0.195 1.195 16 C 0.333 3.667 17 O -0.452 6.452 18 C -0.164 4.164 19 H 0.150 0.850 20 C -0.119 4.119 21 C -0.163 4.163 22 H 0.210 0.790 23 N 0.536 4.464 24 O -0.391 6.391 25 O -0.391 6.391 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.165 0.835 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.438 -7.728 -0.621 9.470 hybrid contribution -0.194 1.146 0.255 1.190 sum 5.245 -6.582 -0.366 8.424 Atomic orbital electron populations 1.21738 0.95711 1.01590 1.01214 1.21880 0.96232 0.95180 1.03219 1.20554 0.94297 0.92032 0.84522 1.22072 1.01284 1.00833 0.95969 1.22122 0.94284 1.01522 1.02947 1.48189 1.50035 1.27386 1.04390 1.19247 0.89984 0.80698 0.97589 1.21514 0.93419 0.91249 1.50833 0.92656 1.25534 0.95887 1.01353 0.94683 1.69988 1.11110 1.24534 1.50190 0.85769 0.78915 0.79073 0.78915 1.19909 1.21385 1.19459 1.19060 0.81049 0.82639 0.83982 1.90578 1.37608 1.30333 1.86699 1.22748 1.04552 1.01732 0.87359 0.85009 1.23686 1.00832 0.92366 0.95045 1.25137 0.94508 1.06088 0.90581 0.79038 1.44062 1.01274 0.99965 1.01110 1.94523 1.61828 1.22214 1.60581 1.94547 1.62471 1.19202 1.62907 0.91661 0.95267 0.91938 0.89167 0.91914 0.92677 0.89618 0.92439 0.91977 0.90135 0.93952 0.94565 0.96315 0.92516 0.83493 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.40 71.98 0.68 -3.38 16 2 C -0.13 -3.62 4.76 30.59 0.15 -3.47 16 3 C 0.17 5.45 0.73 3.60 0.00 5.46 16 4 C -0.14 -4.49 6.87 71.98 0.49 -4.00 16 5 C -0.15 -4.64 8.30 71.98 0.60 -4.04 16 6 N -0.57 -21.17 1.64 -779.05 -1.28 -22.45 16 7 C 0.25 10.63 4.41 85.64 0.38 11.01 16 8 C -0.53 -25.10 8.65 25.60 0.22 -24.88 16 9 H 0.06 2.64 7.81 -2.91 -0.02 2.62 16 10 C 0.03 1.28 5.46 84.65 0.46 1.74 16 11 N -0.92 -48.28 13.29 21.45 0.28 -47.99 16 12 Si 0.95 39.62 29.54 68.60 2.03 41.64 16 13 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 14 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 16 C 0.55 19.71 6.85 87.66 0.60 20.31 16 17 O -0.57 -21.13 12.59 -3.04 -0.04 -21.17 16 18 C -0.14 -4.70 5.22 -11.54 -0.06 -4.76 16 19 H 0.13 4.81 6.34 -2.39 -0.02 4.79 16 20 C -0.08 -2.22 9.72 30.62 0.30 -1.93 16 21 C -0.06 -1.84 6.43 45.01 0.29 -1.55 16 22 H 0.19 5.13 7.68 -2.39 -0.02 5.11 16 23 N 0.02 0.57 4.33 -169.29 -0.73 -0.17 16 24 O -0.17 -5.93 19.24 18.89 0.36 -5.57 16 25 O -0.17 -5.96 18.28 18.88 0.35 -5.62 16 26 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 27 H 0.03 0.93 7.60 -2.39 -0.02 0.91 16 28 H 0.06 1.66 6.43 -2.39 -0.02 1.65 16 29 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.06 2.01 6.29 -2.39 -0.02 2.00 16 31 H 0.05 2.01 7.13 -2.39 -0.02 1.99 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.86 5.21 -2.39 -0.01 1.84 16 34 H 0.06 2.04 6.27 -2.39 -0.01 2.02 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.67 5.75 -2.39 -0.01 1.65 16 38 H 0.02 0.88 5.86 -2.39 -0.01 0.87 16 39 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 40 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 41 H 0.14 3.71 7.63 -2.39 -0.02 3.69 16 Total: -1.00 -54.69 334.20 6.11 -48.58 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.04 Total: 22.23 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 4.11 Total: -9.50 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.73 Total: -70.61 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: 0.67 Total: -32.36 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.64 kcal Total: -54.69 6.11 -48.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841188040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.650 kcal (2) G-P(sol) polarization free energy of solvation -54.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds