Wall clock time and date at job start Tue Mar 31 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 C 1.52999 * 109.47073 * 240.00120 * 2 1 3 5 5 N 1.46491 * 109.47360 * 294.71193 * 4 2 1 6 6 C 1.46500 * 120.00555 * 96.23603 * 5 4 2 7 7 C 1.50706 * 109.46981 * 85.86312 * 6 5 4 8 8 H 1.07991 * 119.99816 * 1.24750 * 7 6 5 9 9 C 1.37877 * 119.99594 * 181.24937 * 7 6 5 10 10 N 1.31509 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99563 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46836 * 60.00037 * 11 9 7 13 13 H 1.48501 * 109.46816 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47277 * 300.00058 * 11 9 7 15 15 C 1.34779 * 119.99789 * 276.23796 * 5 4 2 16 16 O 1.21283 * 120.00201 * 355.29732 * 15 5 4 17 17 C 1.50706 * 119.99933 * 175.29776 * 15 5 4 18 18 H 1.09002 * 110.50254 * 332.59038 * 17 15 5 19 19 N 1.47100 * 110.56208 * 209.69098 * 17 15 5 20 20 C 1.34001 * 108.87918 * 241.42450 * 19 17 15 21 21 O 1.21512 * 123.07297 * 180.02562 * 20 19 17 22 22 O 1.33776 * 113.85976 * 0.02562 * 20 19 17 23 23 C 1.45699 * 109.47442 * 359.97438 * 22 20 19 24 24 H 1.09003 * 110.52274 * 241.37543 * 23 22 20 25 25 C 1.52998 * 110.52347 * 118.63308 * 23 22 20 26 26 H 1.08995 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46832 * 299.99615 * 1 2 3 28 28 H 1.09003 * 109.46960 * 59.99850 * 1 2 3 29 29 H 1.09003 * 109.47698 * 120.00239 * 2 1 3 30 30 H 1.08993 * 109.47431 * 299.99887 * 3 2 1 31 31 H 1.09002 * 109.47017 * 60.00497 * 3 2 1 32 32 H 1.09008 * 109.47256 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46957 * 54.70971 * 4 2 1 34 34 H 1.08999 * 109.47340 * 174.70388 * 4 2 1 35 35 H 1.08999 * 109.47497 * 205.86174 * 6 5 4 36 36 H 1.09000 * 109.46851 * 325.86355 * 6 5 4 37 37 H 0.97002 * 119.99916 * 179.97438 * 10 9 7 38 38 H 0.96991 * 125.55856 * 61.40739 * 19 17 15 39 39 H 1.08999 * 109.47200 * 311.57281 * 25 23 22 40 40 H 1.09001 * 109.46818 * 71.56577 * 25 23 22 41 41 H 1.08991 * 109.47671 * 191.56802 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6584 -2.1342 -1.1874 6 6 0.4489 -2.5971 -1.8722 7 6 0.7758 -2.9167 -3.3082 8 1 1.7878 -2.8071 -3.6689 9 6 -0.2173 -3.3489 -4.1615 10 7 -1.4495 -3.4828 -3.7221 11 14 0.1878 -3.7443 -5.9417 12 1 1.1998 -4.8301 -5.9896 13 1 -1.0443 -4.1854 -6.6434 14 1 0.7301 -2.5325 -6.6069 15 6 2.4202 -3.0084 -0.5004 16 8 3.4655 -2.6435 -0.0053 17 6 1.9730 -4.4395 -0.3474 18 1 0.8861 -4.5068 -0.3933 19 7 2.4761 -5.0060 0.9135 20 6 3.2759 -6.0441 0.6338 21 8 3.8315 -6.7028 1.4905 22 8 3.4068 -6.2892 -0.6748 23 6 2.6169 -5.3263 -1.4307 24 1 1.8494 -5.8354 -2.0138 25 6 3.5182 -4.4904 -2.3417 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8935 -0.5139 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6014 -0.2650 -2.1367 34 1 3.1259 -0.6398 -1.2980 35 1 0.0713 -3.4921 -1.3777 36 1 -0.3099 -1.8153 -1.8375 37 1 -2.1482 -3.7865 -4.3226 38 1 2.2638 -4.6809 1.8023 39 1 4.3678 -4.1178 -1.7695 40 1 3.8774 -5.1091 -3.1641 41 1 2.9517 -3.6491 -2.7405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841384764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:12 Heat of formation + Delta-G solvation = -114.194655 kcal Electronic energy + Delta-G solvation = -24357.210359 eV Core-core repulsion = 20851.446724 eV Total energy + Delta-G solvation = -3505.763635 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62992 -39.30553 -36.98072 -36.25835 -34.51270 -34.10721 -32.52869 -31.54818 -27.88422 -27.31889 -26.90215 -25.13617 -23.43623 -22.45969 -21.95314 -20.22509 -18.74897 -17.95483 -17.11605 -16.76687 -16.33835 -15.86073 -15.57504 -14.97023 -14.67296 -14.39576 -14.21639 -14.11044 -13.68955 -13.17519 -12.86204 -12.60122 -12.47214 -12.28234 -12.11275 -11.83823 -11.71064 -11.42763 -11.24451 -11.20536 -11.03868 -10.82495 -10.66783 -10.50574 -10.42368 -10.36716 -10.23577 -9.95375 -9.76184 -8.92191 -8.64552 -7.94189 -6.38002 -4.47253 2.76205 2.94912 3.06031 3.12198 3.19042 3.21588 3.48639 3.92032 4.16585 4.44477 4.79591 4.93978 5.06226 5.12367 5.18319 5.27404 5.33459 5.54715 5.57533 5.77853 5.85310 5.89824 6.06075 6.07546 6.14600 6.19009 6.21817 6.29819 6.41614 6.54797 6.59390 6.62038 6.92408 6.94441 7.27461 7.50104 7.56410 7.80591 8.03853 8.31083 8.52886 8.69009 9.22080 10.68070 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.008576 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.893280 B = 3264.231339 C = 5139.908322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.125 3.875 5 N -0.586 5.586 6 C 0.228 3.772 7 C -0.548 4.548 8 H 0.068 0.932 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.892 3.108 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.512 3.488 16 O -0.553 6.553 17 C 0.078 3.922 18 H 0.130 0.870 19 N -0.714 5.714 20 C 0.653 3.347 21 O -0.536 6.536 22 O -0.328 6.328 23 C 0.096 3.904 24 H 0.131 0.869 25 C -0.182 4.182 26 H 0.061 0.939 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.268 0.732 38 H 0.434 0.566 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 4.284 3.406 5.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.200 4.200 4 C 0.002 3.998 5 N -0.316 5.316 6 C 0.109 3.891 7 C -0.586 4.586 8 H 0.086 0.914 9 C -0.134 4.134 10 N -0.523 5.523 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.298 3.702 16 O -0.432 6.432 17 C -0.031 4.031 18 H 0.147 0.853 19 N -0.385 5.385 20 C 0.406 3.594 21 O -0.422 6.422 22 O -0.238 6.238 23 C 0.040 3.960 24 H 0.148 0.852 25 C -0.238 4.238 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.276 0.724 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.991 3.839 3.730 5.711 hybrid contribution -0.318 0.085 -0.758 0.826 sum 1.673 3.924 2.972 5.199 Atomic orbital electron populations 1.21878 0.94921 1.02386 1.01055 1.21484 0.96344 0.95988 0.99231 1.21746 1.00850 0.95843 1.01520 1.21404 1.00160 0.80682 0.97532 1.48244 1.26950 1.07289 1.49135 1.19686 0.81403 0.96214 0.91834 1.21430 0.95590 1.46847 0.94721 0.91446 1.24903 0.94740 0.94857 0.98853 1.69886 1.00728 1.45251 1.36402 0.86631 0.78033 0.79146 0.84253 1.19762 1.21087 1.20033 1.20113 0.84232 0.86727 0.79166 1.90664 1.23338 1.79178 1.50062 1.22600 1.02333 0.93305 0.84852 0.85272 1.45696 1.50974 1.32682 1.09121 1.18425 0.78253 0.80310 0.82458 1.91022 1.51920 1.53826 1.45475 1.87282 1.66267 1.53130 1.17102 1.23723 0.93373 0.87508 0.91408 0.85181 1.22551 1.00554 1.01472 0.99261 0.91951 0.93604 0.92534 0.91413 0.92615 0.92936 0.92798 0.89824 0.91169 0.94531 0.93547 0.92199 0.72410 0.91508 0.91097 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.37 37.16 0.31 -1.66 16 2 C -0.11 -1.54 3.08 -90.62 -0.28 -1.82 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C 0.13 1.99 4.83 -4.05 -0.02 1.97 16 5 N -0.59 -10.16 1.89 -175.06 -0.33 -10.49 16 6 C 0.23 4.43 4.31 -5.19 -0.02 4.40 16 7 C -0.55 -11.84 8.36 -34.44 -0.29 -12.13 16 8 H 0.07 1.46 5.92 -52.49 -0.31 1.15 16 9 C 0.07 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -21.54 13.29 55.43 0.74 -20.81 16 11 Si 0.89 18.37 29.54 -169.99 -5.02 13.35 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 C 0.51 9.08 4.66 -10.98 -0.05 9.03 16 16 O -0.55 -11.10 15.71 5.55 0.09 -11.01 16 17 C 0.08 1.27 3.54 -68.18 -0.24 1.03 16 18 H 0.13 1.96 5.88 -51.93 -0.31 1.66 16 19 N -0.71 -11.39 5.76 -59.35 -0.34 -11.73 16 20 C 0.65 12.26 9.16 53.71 0.49 12.75 16 21 O -0.54 -11.49 18.04 -19.12 -0.34 -11.84 16 22 O -0.33 -5.98 10.80 -37.84 -0.41 -6.39 16 23 C 0.10 1.58 4.50 -26.16 -0.12 1.46 16 24 H 0.13 1.98 8.14 -51.93 -0.42 1.56 16 25 C -0.18 -3.04 8.49 37.16 0.32 -2.73 16 26 H 0.06 0.94 6.30 -51.93 -0.33 0.61 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.08 1.33 8.02 -51.93 -0.42 0.91 16 34 H 0.07 1.15 7.55 -51.93 -0.39 0.76 16 35 H 0.04 0.72 5.56 -51.93 -0.29 0.43 16 36 H 0.05 0.96 6.53 -51.93 -0.34 0.62 16 37 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 38 H 0.43 5.97 8.96 -40.82 -0.37 5.60 16 39 H 0.07 1.19 7.35 -51.93 -0.38 0.81 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.12 2.08 3.66 -51.93 -0.19 1.89 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -27.05 329.47 -6.15 -33.20 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.83 Total: 8.24 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: 0.34 Total: 12.51 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.06 Total: -43.03 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.67 Total: -29.24 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.05 -6.15 -33.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841384764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.992 kcal (2) G-P(sol) polarization free energy of solvation -27.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds