Wall clock time and date at job start Tue Mar 31 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46995 * 2 1 4 4 C 1.52999 * 109.47073 * 240.00120 * 2 1 3 5 5 N 1.46491 * 109.47360 * 294.71193 * 4 2 1 6 6 C 1.46500 * 120.00555 * 96.23603 * 5 4 2 7 7 C 1.50706 * 109.46981 * 85.86312 * 6 5 4 8 8 H 1.07991 * 119.99816 * 1.24750 * 7 6 5 9 9 C 1.37877 * 119.99594 * 181.24937 * 7 6 5 10 10 N 1.31509 * 120.00222 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99563 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46836 * 60.00037 * 11 9 7 13 13 H 1.48501 * 109.46816 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47277 * 300.00058 * 11 9 7 15 15 C 1.34779 * 119.99789 * 276.23796 * 5 4 2 16 16 O 1.21283 * 120.00201 * 355.29732 * 15 5 4 17 17 C 1.50706 * 119.99933 * 175.29776 * 15 5 4 18 18 H 1.09002 * 110.50254 * 332.59038 * 17 15 5 19 19 N 1.47100 * 110.56208 * 209.69098 * 17 15 5 20 20 C 1.34001 * 108.87918 * 241.42450 * 19 17 15 21 21 O 1.21512 * 123.07297 * 180.02562 * 20 19 17 22 22 O 1.33776 * 113.85976 * 0.02562 * 20 19 17 23 23 C 1.45699 * 109.47442 * 359.97438 * 22 20 19 24 24 H 1.09003 * 110.52274 * 241.37543 * 23 22 20 25 25 C 1.52998 * 110.52347 * 118.63308 * 23 22 20 26 26 H 1.08995 * 109.46878 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46832 * 299.99615 * 1 2 3 28 28 H 1.09003 * 109.46960 * 59.99850 * 1 2 3 29 29 H 1.09003 * 109.47698 * 120.00239 * 2 1 3 30 30 H 1.08993 * 109.47431 * 299.99887 * 3 2 1 31 31 H 1.09002 * 109.47017 * 60.00497 * 3 2 1 32 32 H 1.09008 * 109.47256 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46957 * 54.70971 * 4 2 1 34 34 H 1.08999 * 109.47340 * 174.70388 * 4 2 1 35 35 H 1.08999 * 109.47497 * 205.86174 * 6 5 4 36 36 H 1.09000 * 109.46851 * 325.86355 * 6 5 4 37 37 H 0.97002 * 119.99916 * 179.97438 * 10 9 7 38 38 H 0.96991 * 125.55856 * 61.40739 * 19 17 15 39 39 H 1.08999 * 109.47200 * 311.57281 * 25 23 22 40 40 H 1.09001 * 109.46818 * 71.56577 * 25 23 22 41 41 H 1.08991 * 109.47671 * 191.56802 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6584 -2.1342 -1.1874 6 6 0.4489 -2.5971 -1.8722 7 6 0.7758 -2.9167 -3.3082 8 1 1.7878 -2.8071 -3.6689 9 6 -0.2173 -3.3489 -4.1615 10 7 -1.4495 -3.4828 -3.7221 11 14 0.1878 -3.7443 -5.9417 12 1 1.1998 -4.8301 -5.9896 13 1 -1.0443 -4.1854 -6.6434 14 1 0.7301 -2.5325 -6.6069 15 6 2.4202 -3.0084 -0.5004 16 8 3.4655 -2.6435 -0.0053 17 6 1.9730 -4.4395 -0.3474 18 1 0.8861 -4.5068 -0.3933 19 7 2.4761 -5.0060 0.9135 20 6 3.2759 -6.0441 0.6338 21 8 3.8315 -6.7028 1.4905 22 8 3.4068 -6.2892 -0.6748 23 6 2.6169 -5.3263 -1.4307 24 1 1.8494 -5.8354 -2.0138 25 6 3.5182 -4.4904 -2.3417 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8935 -0.5139 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1301 1.4425 -0.0005 33 1 1.6014 -0.2650 -2.1367 34 1 3.1259 -0.6398 -1.2980 35 1 0.0713 -3.4921 -1.3777 36 1 -0.3099 -1.8153 -1.8375 37 1 -2.1482 -3.7865 -4.3226 38 1 2.2638 -4.6809 1.8023 39 1 4.3678 -4.1178 -1.7695 40 1 3.8774 -5.1091 -3.1641 41 1 2.9517 -3.6491 -2.7405 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841384764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:12 Heat of formation + Delta-G solvation = -131.032704 kcal Electronic energy + Delta-G solvation = -24357.940511 eV Core-core repulsion = 20851.446724 eV Total energy + Delta-G solvation = -3506.493787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.05475 -40.75847 -38.48694 -37.61896 -35.96182 -35.50054 -34.15932 -32.92547 -29.42679 -28.72885 -27.96331 -26.48159 -25.02628 -23.91043 -23.36431 -21.42405 -20.15489 -19.35217 -18.75156 -18.25215 -17.80250 -17.31866 -17.01982 -16.44538 -16.17146 -15.81845 -15.57762 -15.41841 -14.96612 -14.58111 -14.34606 -14.03929 -13.76449 -13.68181 -13.48060 -13.17272 -13.00839 -12.86101 -12.69348 -12.55861 -12.46386 -12.13891 -12.03271 -12.00117 -11.86906 -11.73106 -11.53346 -11.49750 -11.29390 -10.57189 -10.17163 -9.43160 -8.13414 -6.25357 1.33789 1.48173 1.49229 1.54922 1.57610 1.65241 2.07768 2.46093 2.56340 3.08563 3.19194 3.38101 3.72446 3.84855 4.01721 4.07360 4.20338 4.22096 4.23748 4.64406 4.71978 4.74894 4.81648 4.83297 4.94752 4.97762 5.06219 5.09035 5.13919 5.24338 5.33993 5.44266 5.49350 5.63183 5.75024 5.86338 6.06959 6.11165 6.53818 6.84481 6.90119 7.19919 7.46801 8.91341 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010830 B = 0.008576 C = 0.005446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.893280 B = 3264.231339 C = 5139.908322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.104 4.104 3 C -0.137 4.137 4 C 0.122 3.878 5 N -0.582 5.582 6 C 0.240 3.760 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.035 3.965 10 N -0.914 5.914 11 Si 0.937 3.063 12 H -0.266 1.266 13 H -0.292 1.292 14 H -0.277 1.277 15 C 0.515 3.485 16 O -0.576 6.576 17 C 0.081 3.919 18 H 0.145 0.855 19 N -0.698 5.698 20 C 0.651 3.349 21 O -0.567 6.567 22 O -0.334 6.334 23 C 0.093 3.907 24 H 0.148 0.852 25 C -0.175 4.175 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.266 0.734 38 H 0.444 0.556 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 4.827 3.190 5.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.195 4.195 4 C 0.000 4.000 5 N -0.311 5.311 6 C 0.120 3.880 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.167 4.167 10 N -0.552 5.552 11 Si 0.764 3.236 12 H -0.191 1.191 13 H -0.218 1.218 14 H -0.203 1.203 15 C 0.301 3.699 16 O -0.457 6.457 17 C -0.028 4.028 18 H 0.162 0.838 19 N -0.369 5.369 20 C 0.404 3.596 21 O -0.456 6.456 22 O -0.244 6.244 23 C 0.038 3.962 24 H 0.166 0.834 25 C -0.232 4.232 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.288 0.712 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.894 4.411 3.510 5.947 hybrid contribution -0.272 -0.026 -0.703 0.755 sum 1.622 4.386 2.807 5.454 Atomic orbital electron populations 1.21822 0.94532 1.01507 1.01879 1.21410 0.96531 0.97086 0.97366 1.21711 1.00864 0.94239 1.02659 1.21528 0.99820 0.80037 0.98656 1.48186 1.26247 1.07989 1.48657 1.19436 0.81680 0.95844 0.91074 1.21653 0.95329 1.45381 0.95580 0.91458 1.25404 0.94724 0.95242 1.01311 1.69964 1.01349 1.46762 1.37169 0.85921 0.77520 0.78876 0.81307 1.19056 1.21816 1.20292 1.20270 0.83755 0.87181 0.78682 1.90660 1.24295 1.79694 1.51076 1.22646 1.03025 0.92316 0.84827 0.83823 1.45603 1.49925 1.31689 1.09710 1.18499 0.78225 0.80509 0.82367 1.90997 1.53224 1.55001 1.46337 1.87264 1.66593 1.53540 1.16993 1.23916 0.93502 0.87439 0.91362 0.83433 1.22461 0.99863 1.01312 0.99585 0.93653 0.91829 0.92641 0.92776 0.91811 0.91475 0.92779 0.89915 0.91802 0.94387 0.94622 0.92512 0.71183 0.92913 0.89487 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 8.37 71.98 0.60 -3.00 16 2 C -0.10 -2.76 3.08 -10.79 -0.03 -2.80 16 3 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 4 C 0.12 3.77 4.83 86.38 0.42 4.18 16 5 N -0.58 -19.59 1.89 -826.16 -1.56 -21.16 16 6 C 0.24 9.05 4.31 85.63 0.37 9.42 16 7 C -0.54 -22.67 8.36 25.60 0.21 -22.46 16 8 H 0.07 2.81 5.92 -2.92 -0.02 2.80 16 9 C 0.03 1.55 5.46 84.66 0.46 2.01 16 10 N -0.91 -43.75 13.29 21.45 0.28 -43.46 16 11 Si 0.94 36.65 29.54 68.60 2.03 38.68 16 12 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 13 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 15 C 0.52 17.71 4.66 87.66 0.41 18.12 16 16 O -0.58 -22.68 15.71 -3.04 -0.05 -22.73 16 17 C 0.08 2.50 3.54 44.50 0.16 2.66 16 18 H 0.14 4.09 5.88 -2.39 -0.01 4.08 16 19 N -0.70 -21.41 5.76 -573.39 -3.30 -24.71 16 20 C 0.65 23.86 9.16 129.91 1.19 25.05 16 21 O -0.57 -24.06 18.04 19.65 0.35 -23.71 16 22 O -0.33 -11.79 10.80 -47.36 -0.51 -12.30 16 23 C 0.09 2.92 4.50 30.96 0.14 3.06 16 24 H 0.15 4.15 8.14 -2.39 -0.02 4.13 16 25 C -0.18 -5.63 8.49 71.98 0.61 -5.02 16 26 H 0.04 1.31 6.30 -2.39 -0.02 1.29 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.08 2.55 8.02 -2.39 -0.02 2.53 16 34 H 0.06 2.05 7.55 -2.39 -0.02 2.03 16 35 H 0.04 1.45 5.56 -2.39 -0.01 1.44 16 36 H 0.04 1.45 6.53 -2.39 -0.02 1.44 16 37 H 0.27 12.44 8.31 -92.71 -0.77 11.67 16 38 H 0.44 11.65 8.96 -92.71 -0.83 10.82 16 39 H 0.05 1.83 7.35 -2.39 -0.02 1.82 16 40 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.10 3.61 3.66 -2.39 -0.01 3.60 16 Total: -1.00 -55.54 329.47 2.67 -52.87 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.23 Total: 27.55 kcal Atomic # 6 Polarization: 23.77 SS G_CDS: 5.20 Total: 28.97 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -4.58 Total: -89.33 kcal Atomic # 8 Polarization: -58.53 SS G_CDS: -0.20 Total: -58.74 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -55.54 2.67 -52.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841384764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.164 kcal (2) G-P(sol) polarization free energy of solvation -55.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds