Wall clock time and date at job start Tue Mar 31 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47681 * 2 1 4 4 C 1.52994 * 109.47399 * 120.00509 * 2 1 3 5 5 N 1.46502 * 109.47380 * 63.91685 * 4 2 1 6 6 C 1.46505 * 119.99871 * 84.21210 * 5 4 2 7 7 C 1.50699 * 109.46757 * 90.00084 * 6 5 4 8 8 H 1.08002 * 120.00562 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99570 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99754 * 179.72840 * 9 7 6 12 12 H 1.48505 * 109.46967 * 180.27456 * 11 9 7 13 13 H 1.48504 * 109.47070 * 300.27195 * 11 9 7 14 14 H 1.48498 * 109.46968 * 60.27558 * 11 9 7 15 15 C 1.34776 * 120.00355 * 264.21342 * 5 4 2 16 16 O 1.21285 * 119.99671 * 4.98151 * 15 5 4 17 17 C 1.50694 * 120.00025 * 184.97720 * 15 5 4 18 18 H 1.08997 * 110.50487 * 333.41763 * 17 15 5 19 19 N 1.47097 * 110.56515 * 210.67779 * 17 15 5 20 20 C 1.33997 * 108.88266 * 241.42884 * 19 17 15 21 21 O 1.21514 * 123.07215 * 180.02562 * 20 19 17 22 22 O 1.33767 * 113.85870 * 0.02562 * 20 19 17 23 23 C 1.45702 * 109.47696 * 359.97438 * 22 20 19 24 24 H 1.09004 * 110.52005 * 118.63079 * 23 22 20 25 25 C 1.53001 * 110.52763 * 241.37276 * 23 22 20 26 26 H 1.09002 * 109.47334 * 54.58243 * 1 2 3 27 27 H 1.09000 * 109.47599 * 174.59114 * 1 2 3 28 28 H 1.09002 * 109.46923 * 294.58764 * 1 2 3 29 29 H 1.09009 * 109.46915 * 240.00149 * 2 1 3 30 30 H 1.08999 * 109.47693 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47086 * 300.00506 * 3 2 1 32 32 H 1.09009 * 109.46305 * 60.00003 * 3 2 1 33 33 H 1.09001 * 109.47221 * 303.92033 * 4 2 1 34 34 H 1.08999 * 109.47568 * 183.91973 * 4 2 1 35 35 H 1.09001 * 109.46727 * 330.00704 * 6 5 4 36 36 H 1.08993 * 109.46999 * 210.00217 * 6 5 4 37 37 H 0.96999 * 119.99714 * 359.72369 * 10 9 7 38 38 H 0.97010 * 125.55453 * 61.44446 * 19 17 15 39 39 H 1.08997 * 109.47122 * 179.60568 * 25 23 22 40 40 H 1.09001 * 109.46938 * 299.61434 * 25 23 22 41 41 H 1.09005 * 109.46664 * 59.60507 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6303 -2.1271 1.2028 6 6 2.4364 -3.1010 0.4626 7 6 3.4737 -3.6953 1.3801 8 1 3.5270 -3.3795 2.4115 9 6 4.3549 -4.6423 0.9027 10 7 4.2905 -5.0265 -0.3534 11 14 5.6457 -5.3734 2.0380 12 1 6.4668 -6.3562 1.2861 13 1 6.5205 -4.2905 2.5553 14 1 4.9761 -6.0546 3.1750 15 6 0.5118 -2.5245 1.8412 16 8 -0.2038 -1.7052 2.3775 17 6 0.1502 -3.9867 1.8883 18 1 0.5696 -4.5115 1.0300 19 7 -1.3101 -4.1566 1.9349 20 6 -1.6379 -4.7809 3.0744 21 8 -2.7833 -5.0523 3.3760 22 8 -0.5891 -5.0780 3.8496 23 6 0.6357 -4.6217 3.2057 24 1 1.1391 -3.8791 3.8249 25 6 1.5647 -5.8036 2.9212 26 1 -0.3634 0.5956 -0.8375 27 1 -0.3634 -1.0231 -0.0969 28 1 -0.3633 0.4276 0.9345 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6205 -0.2498 2.1378 34 1 3.1277 -0.6609 1.2850 35 1 2.9313 -2.6038 -0.3716 36 1 1.7910 -3.8929 0.0825 37 1 3.6204 -4.6466 -0.9430 38 1 -1.9341 -3.8646 1.2519 39 1 2.4711 -5.4442 2.4340 40 1 1.8262 -6.2941 3.8589 41 1 1.0585 -6.5145 2.2682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841384766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:19 Heat of formation + Delta-G solvation = -121.749676 kcal Electronic energy + Delta-G solvation = -24351.099061 eV Core-core repulsion = 20845.007816 eV Total energy + Delta-G solvation = -3506.091245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60675 -39.38165 -37.01756 -36.25070 -34.79010 -34.21264 -32.67819 -31.55943 -27.73082 -27.21317 -26.94787 -25.02929 -23.38108 -22.57241 -22.00629 -20.24173 -19.15866 -17.74929 -17.35727 -17.21386 -16.29527 -16.06558 -15.47467 -14.84447 -14.59999 -14.30835 -14.26165 -13.98009 -13.61920 -13.33508 -13.05062 -12.95646 -12.47949 -12.39002 -12.11464 -11.97624 -11.63974 -11.60132 -11.32759 -11.23016 -10.94320 -10.81070 -10.76161 -10.46829 -10.43828 -10.41103 -10.30139 -9.97062 -9.47676 -8.92876 -8.68249 -7.96485 -6.73795 -4.52353 2.69536 2.88584 3.02119 3.21106 3.25769 3.40641 3.43417 3.86968 4.21625 4.43680 4.73861 4.93537 5.00284 5.05000 5.11056 5.21561 5.27423 5.49204 5.57584 5.71106 5.78410 5.82517 5.99703 6.05930 6.08304 6.13602 6.19040 6.19688 6.28113 6.44535 6.54658 6.59675 6.73621 6.90399 7.08027 7.47207 7.57936 7.80411 8.10637 8.28328 8.39967 8.55304 9.17097 10.61285 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.009277 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.912561 B = 3017.479442 C = 5238.436724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.142 4.142 4 C 0.124 3.876 5 N -0.579 5.579 6 C 0.221 3.779 7 C -0.621 4.621 8 H 0.060 0.940 9 C 0.030 3.970 10 N -0.895 5.895 11 Si 1.056 2.944 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.280 1.280 15 C 0.506 3.494 16 O -0.548 6.548 17 C 0.082 3.918 18 H 0.130 0.870 19 N -0.715 5.715 20 C 0.653 3.347 21 O -0.535 6.535 22 O -0.327 6.327 23 C 0.099 3.901 24 H 0.114 0.886 25 C -0.177 4.177 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.027 0.973 37 H 0.270 0.730 38 H 0.433 0.567 39 H 0.128 0.872 40 H 0.068 0.932 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 4.929 -0.161 5.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.200 4.200 4 C 0.000 4.000 5 N -0.309 5.309 6 C 0.101 3.899 7 C -0.660 4.660 8 H 0.078 0.922 9 C -0.177 4.177 10 N -0.529 5.529 11 Si 0.883 3.117 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.206 1.206 15 C 0.291 3.709 16 O -0.427 6.427 17 C -0.027 4.027 18 H 0.148 0.852 19 N -0.386 5.386 20 C 0.406 3.594 21 O -0.422 6.422 22 O -0.238 6.238 23 C 0.043 3.957 24 H 0.132 0.868 25 C -0.234 4.234 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.276 0.724 39 H 0.146 0.854 40 H 0.087 0.913 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.408 3.948 0.679 4.246 hybrid contribution -1.271 1.344 -0.653 1.962 sum -2.679 5.292 0.026 5.932 Atomic orbital electron populations 1.21737 0.94924 1.01262 1.01251 1.21494 0.96429 0.96064 0.99155 1.21748 1.00951 0.95702 1.01566 1.21464 0.99917 0.80816 0.97758 1.48011 1.23763 1.09324 1.49841 1.19631 0.90652 0.87018 0.92572 1.22260 1.18512 1.26688 0.98509 0.92161 1.25766 0.98931 0.94752 0.98234 1.70847 1.34837 1.42310 1.04903 0.83710 0.76205 0.76771 0.74994 1.20472 1.21135 1.20625 1.20261 0.81703 0.89622 0.79287 1.90672 1.50983 1.54042 1.47016 1.22553 0.81715 0.96093 1.02309 0.85237 1.45719 1.07735 1.62336 1.22802 1.18420 0.84861 0.76878 0.79257 1.91023 1.15989 1.59722 1.75435 1.87282 1.16717 1.75324 1.44432 1.23633 0.83618 0.98130 0.90310 0.86840 1.22533 1.01450 0.96131 1.03235 0.93737 0.93373 0.92236 0.91175 0.92568 0.92804 0.92726 0.90556 0.90262 0.95028 0.95512 0.91920 0.72438 0.85381 0.91270 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 7.92 37.15 0.29 -1.63 16 2 C -0.11 -1.57 3.13 -90.63 -0.28 -1.85 16 3 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 4 C 0.12 1.98 4.96 -4.04 -0.02 1.96 16 5 N -0.58 -10.22 2.24 -175.06 -0.39 -10.61 16 6 C 0.22 4.30 4.24 -5.19 -0.02 4.28 16 7 C -0.62 -13.29 7.12 -34.44 -0.25 -13.53 16 8 H 0.06 1.32 7.81 -52.49 -0.41 0.91 16 9 C 0.03 0.69 4.90 -17.82 -0.09 0.60 16 10 N -0.89 -22.13 13.65 55.43 0.76 -21.38 16 11 Si 1.06 20.90 29.58 -169.99 -5.03 15.87 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 H -0.29 -5.55 7.11 56.52 0.40 -5.15 16 14 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 15 C 0.51 9.11 5.55 -10.99 -0.06 9.05 16 16 O -0.55 -10.95 14.85 5.55 0.08 -10.87 16 17 C 0.08 1.37 3.31 -68.19 -0.23 1.15 16 18 H 0.13 2.11 5.38 -51.93 -0.28 1.83 16 19 N -0.71 -11.65 5.77 -59.36 -0.34 -11.99 16 20 C 0.65 12.42 9.16 53.71 0.49 12.91 16 21 O -0.54 -11.57 18.04 -19.12 -0.34 -11.91 16 22 O -0.33 -6.06 10.80 -37.82 -0.41 -6.47 16 23 C 0.10 1.67 4.14 -26.16 -0.11 1.56 16 24 H 0.11 1.91 7.72 -51.93 -0.40 1.51 16 25 C -0.18 -2.84 9.46 37.16 0.35 -2.49 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.76 6.90 -51.93 -0.36 0.40 16 28 H 0.06 0.91 7.81 -51.93 -0.41 0.51 16 29 H 0.07 1.03 8.11 -51.92 -0.42 0.61 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.08 1.26 7.33 -51.93 -0.38 0.88 16 34 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 35 H 0.03 0.65 7.90 -51.93 -0.41 0.24 16 36 H 0.03 0.53 5.76 -51.93 -0.30 0.23 16 37 H 0.27 6.57 7.22 -40.82 -0.29 6.28 16 38 H 0.43 6.11 8.96 -40.82 -0.37 5.74 16 39 H 0.13 2.31 4.51 -51.93 -0.23 2.08 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -26.83 331.70 -6.27 -33.10 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.01 Total: 8.57 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 0.43 Total: 10.70 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.02 Total: -43.98 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.67 Total: -29.25 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.83 -6.27 -33.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841384766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.651 kcal (2) G-P(sol) polarization free energy of solvation -26.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds