Wall clock time and date at job start Tue Mar 31 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47681 * 2 1 4 4 C 1.52994 * 109.47399 * 120.00509 * 2 1 3 5 5 N 1.46502 * 109.47380 * 63.91685 * 4 2 1 6 6 C 1.46505 * 119.99871 * 84.21210 * 5 4 2 7 7 C 1.50699 * 109.46757 * 90.00084 * 6 5 4 8 8 H 1.08002 * 120.00562 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99570 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00119 * 0.02562 * 9 7 6 11 11 Si 1.86806 * 119.99754 * 179.72840 * 9 7 6 12 12 H 1.48505 * 109.46967 * 180.27456 * 11 9 7 13 13 H 1.48504 * 109.47070 * 300.27195 * 11 9 7 14 14 H 1.48498 * 109.46968 * 60.27558 * 11 9 7 15 15 C 1.34776 * 120.00355 * 264.21342 * 5 4 2 16 16 O 1.21285 * 119.99671 * 4.98151 * 15 5 4 17 17 C 1.50694 * 120.00025 * 184.97720 * 15 5 4 18 18 H 1.08997 * 110.50487 * 333.41763 * 17 15 5 19 19 N 1.47097 * 110.56515 * 210.67779 * 17 15 5 20 20 C 1.33997 * 108.88266 * 241.42884 * 19 17 15 21 21 O 1.21514 * 123.07215 * 180.02562 * 20 19 17 22 22 O 1.33767 * 113.85870 * 0.02562 * 20 19 17 23 23 C 1.45702 * 109.47696 * 359.97438 * 22 20 19 24 24 H 1.09004 * 110.52005 * 118.63079 * 23 22 20 25 25 C 1.53001 * 110.52763 * 241.37276 * 23 22 20 26 26 H 1.09002 * 109.47334 * 54.58243 * 1 2 3 27 27 H 1.09000 * 109.47599 * 174.59114 * 1 2 3 28 28 H 1.09002 * 109.46923 * 294.58764 * 1 2 3 29 29 H 1.09009 * 109.46915 * 240.00149 * 2 1 3 30 30 H 1.08999 * 109.47693 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47086 * 300.00506 * 3 2 1 32 32 H 1.09009 * 109.46305 * 60.00003 * 3 2 1 33 33 H 1.09001 * 109.47221 * 303.92033 * 4 2 1 34 34 H 1.08999 * 109.47568 * 183.91973 * 4 2 1 35 35 H 1.09001 * 109.46727 * 330.00704 * 6 5 4 36 36 H 1.08993 * 109.46999 * 210.00217 * 6 5 4 37 37 H 0.96999 * 119.99714 * 359.72369 * 10 9 7 38 38 H 0.97010 * 125.55453 * 61.44446 * 19 17 15 39 39 H 1.08997 * 109.47122 * 179.60568 * 25 23 22 40 40 H 1.09001 * 109.46938 * 299.61434 * 25 23 22 41 41 H 1.09005 * 109.46664 * 59.60507 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6303 -2.1271 1.2028 6 6 2.4364 -3.1010 0.4626 7 6 3.4737 -3.6953 1.3801 8 1 3.5270 -3.3795 2.4115 9 6 4.3549 -4.6423 0.9027 10 7 4.2905 -5.0265 -0.3534 11 14 5.6457 -5.3734 2.0380 12 1 6.4668 -6.3562 1.2861 13 1 6.5205 -4.2905 2.5553 14 1 4.9761 -6.0546 3.1750 15 6 0.5118 -2.5245 1.8412 16 8 -0.2038 -1.7052 2.3775 17 6 0.1502 -3.9867 1.8883 18 1 0.5696 -4.5115 1.0300 19 7 -1.3101 -4.1566 1.9349 20 6 -1.6379 -4.7809 3.0744 21 8 -2.7833 -5.0523 3.3760 22 8 -0.5891 -5.0780 3.8496 23 6 0.6357 -4.6217 3.2057 24 1 1.1391 -3.8791 3.8249 25 6 1.5647 -5.8036 2.9212 26 1 -0.3634 0.5956 -0.8375 27 1 -0.3634 -1.0231 -0.0969 28 1 -0.3633 0.4276 0.9345 29 1 1.8933 -0.5139 -0.8901 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6205 -0.2498 2.1378 34 1 3.1277 -0.6609 1.2850 35 1 2.9313 -2.6038 -0.3716 36 1 1.7910 -3.8929 0.0825 37 1 3.6204 -4.6466 -0.9430 38 1 -1.9341 -3.8646 1.2519 39 1 2.4711 -5.4442 2.4340 40 1 1.8262 -6.2941 3.8589 41 1 1.0585 -6.5145 2.2682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841384766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:18 Heat of formation + Delta-G solvation = -138.481089 kcal Electronic energy + Delta-G solvation = -24351.824589 eV Core-core repulsion = 20845.007816 eV Total energy + Delta-G solvation = -3506.816773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.06074 -40.84985 -38.55328 -37.63840 -36.26315 -35.63381 -34.27538 -32.94267 -29.10329 -28.78472 -28.05299 -26.37043 -25.05751 -23.99823 -23.43280 -21.48362 -20.58833 -19.24408 -18.84899 -18.74350 -17.81257 -17.52815 -16.96484 -16.25424 -15.95807 -15.70849 -15.56559 -15.54140 -15.09657 -14.60772 -14.51881 -14.40504 -13.86131 -13.81188 -13.50347 -13.18816 -13.03444 -12.84253 -12.71399 -12.58307 -12.33605 -12.20724 -12.02098 -11.93402 -11.89307 -11.85413 -11.61320 -11.44506 -11.10336 -10.53274 -10.26573 -9.49176 -8.52780 -6.31521 1.24503 1.40367 1.57604 1.65993 1.67473 1.85339 1.98887 2.46203 2.60606 3.04486 3.22004 3.29825 3.58987 3.81619 3.90222 3.98780 4.10339 4.14526 4.20937 4.55274 4.61103 4.69200 4.76814 4.81146 4.84057 4.89837 4.94224 4.99917 5.02256 5.16470 5.34212 5.38942 5.40711 5.56560 5.61440 5.87501 6.01424 6.16867 6.47744 6.62186 6.83331 7.07425 7.43138 8.82703 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.010345 B = 0.009277 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.912561 B = 3017.479442 C = 5238.436724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.120 3.880 5 N -0.577 5.577 6 C 0.231 3.769 7 C -0.608 4.608 8 H 0.057 0.943 9 C -0.002 4.002 10 N -0.926 5.926 11 Si 1.085 2.915 12 H -0.293 1.293 13 H -0.280 1.280 14 H -0.257 1.257 15 C 0.508 3.492 16 O -0.567 6.567 17 C 0.087 3.913 18 H 0.137 0.863 19 N -0.699 5.699 20 C 0.651 3.349 21 O -0.565 6.565 22 O -0.333 6.333 23 C 0.099 3.901 24 H 0.114 0.886 25 C -0.170 4.170 26 H 0.063 0.937 27 H 0.029 0.971 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.263 0.737 38 H 0.443 0.557 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.556 5.429 0.037 5.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.002 4.002 5 N -0.306 5.306 6 C 0.110 3.890 7 C -0.647 4.647 8 H 0.075 0.925 9 C -0.204 4.204 10 N -0.563 5.563 11 Si 0.909 3.091 12 H -0.219 1.219 13 H -0.206 1.206 14 H -0.182 1.182 15 C 0.294 3.706 16 O -0.448 6.448 17 C -0.022 4.022 18 H 0.154 0.846 19 N -0.371 5.371 20 C 0.405 3.595 21 O -0.453 6.453 22 O -0.243 6.243 23 C 0.044 3.956 24 H 0.132 0.868 25 C -0.227 4.227 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.288 0.712 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.109 4.476 0.873 4.693 hybrid contribution -1.355 1.247 -0.714 1.975 sum -2.464 5.723 0.159 6.233 Atomic orbital electron populations 1.21665 0.95040 1.00357 1.01425 1.21451 0.96195 0.97406 0.97609 1.21711 1.01295 0.93891 1.02525 1.21599 0.99876 0.80028 0.98712 1.47996 1.23418 1.09822 1.49398 1.19412 0.90414 0.87162 0.91997 1.22364 1.18191 1.25730 0.98374 0.92510 1.26584 1.00226 0.95244 0.98338 1.70933 1.35706 1.43773 1.05846 0.83334 0.74896 0.76328 0.74545 1.21945 1.20582 1.18193 1.20392 0.81467 0.89933 0.78850 1.90669 1.51514 1.54701 1.47866 1.22546 0.81730 0.95342 1.02616 0.84593 1.45629 1.07855 1.61368 1.22253 1.18484 0.84573 0.76863 0.79614 1.91000 1.17149 1.61003 1.76152 1.87265 1.17020 1.75327 1.44679 1.23730 0.83221 0.98535 0.90139 0.86781 1.22442 1.00344 0.95859 1.04053 0.91770 0.95154 0.93402 0.91802 0.92020 0.91303 0.92323 0.91031 0.90386 0.96040 0.95234 0.92649 0.71218 0.86986 0.89703 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 7.92 71.98 0.57 -2.91 16 2 C -0.11 -2.85 3.13 -10.80 -0.03 -2.88 16 3 C -0.14 -2.86 9.19 71.98 0.66 -2.20 16 4 C 0.12 3.73 4.96 86.38 0.43 4.16 16 5 N -0.58 -19.82 2.24 -826.17 -1.85 -21.67 16 6 C 0.23 8.78 4.24 85.63 0.36 9.14 16 7 C -0.61 -25.32 7.12 25.60 0.18 -25.13 16 8 H 0.06 2.40 7.81 -2.91 -0.02 2.37 16 9 C 0.00 -0.08 4.90 84.66 0.41 0.33 16 10 N -0.93 -45.50 13.65 21.45 0.29 -45.21 16 11 Si 1.09 40.82 29.58 68.60 2.03 42.85 16 12 H -0.29 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 14 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 15 C 0.51 17.76 5.55 87.66 0.49 18.25 16 16 O -0.57 -22.15 14.85 -3.04 -0.05 -22.20 16 17 C 0.09 2.78 3.31 44.50 0.15 2.93 16 18 H 0.14 4.25 5.38 -2.39 -0.01 4.24 16 19 N -0.70 -22.00 5.77 -573.44 -3.31 -25.31 16 20 C 0.65 24.16 9.16 129.91 1.19 25.35 16 21 O -0.56 -24.06 18.04 19.64 0.35 -23.71 16 22 O -0.33 -11.90 10.80 -47.27 -0.51 -12.41 16 23 C 0.10 3.19 4.14 30.96 0.13 3.32 16 24 H 0.11 3.68 7.72 -2.39 -0.02 3.66 16 25 C -0.17 -5.13 9.46 71.98 0.68 -4.45 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 0.91 6.90 -2.39 -0.02 0.90 16 28 H 0.05 1.41 7.81 -2.39 -0.02 1.39 16 29 H 0.06 1.79 8.11 -2.38 -0.02 1.77 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.07 2.30 7.33 -2.39 -0.02 2.28 16 34 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 35 H 0.02 0.88 7.90 -2.39 -0.02 0.86 16 36 H 0.03 1.14 5.76 -2.39 -0.01 1.12 16 37 H 0.26 12.82 7.22 -92.71 -0.67 12.15 16 38 H 0.44 11.99 8.96 -92.70 -0.83 11.16 16 39 H 0.11 3.84 4.51 -2.39 -0.01 3.82 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -55.32 331.70 2.50 -52.82 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: 0.31 Total: 28.92 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 5.22 Total: 25.90 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.86 Total: -92.19 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -0.20 Total: -58.31 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -55.32 2.50 -52.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841384766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.657 kcal (2) G-P(sol) polarization free energy of solvation -55.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds