Wall clock time and date at job start Tue Mar 31 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46961 * 2 1 4 4 C 1.53002 * 109.47217 * 119.99498 * 2 1 3 5 5 N 1.46506 * 109.46624 * 63.21878 * 4 2 1 6 6 C 1.46497 * 119.99781 * 80.00816 * 5 4 2 7 7 C 1.50698 * 109.47571 * 89.99740 * 6 5 4 8 8 H 1.08002 * 119.99610 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00352 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00189 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00202 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47328 * 89.99656 * 11 9 7 13 13 H 1.48500 * 109.47268 * 209.99882 * 11 9 7 14 14 H 1.48503 * 109.46967 * 329.99699 * 11 9 7 15 15 C 1.34771 * 120.00074 * 260.27977 * 5 4 2 16 16 O 1.21282 * 119.99783 * 182.51251 * 15 5 4 17 17 C 1.50695 * 120.00024 * 2.51796 * 15 5 4 18 18 H 1.09000 * 110.50502 * 28.12735 * 17 15 5 19 19 N 1.47094 * 110.56783 * 150.87148 * 17 15 5 20 20 C 1.34006 * 108.88064 * 118.56960 * 19 17 15 21 21 O 1.21514 * 123.06902 * 180.02562 * 20 19 17 22 22 O 1.33761 * 113.85725 * 0.02562 * 20 19 17 23 23 C 1.46042 * 109.51282 * 0.08072 * 22 20 19 24 24 H 1.09000 * 110.56708 * 241.31563 * 23 22 20 25 25 C 1.53001 * 110.63676 * 118.47370 * 23 22 20 26 26 H 1.09001 * 109.47022 * 307.94511 * 1 2 3 27 27 H 1.09001 * 109.47011 * 67.94177 * 1 2 3 28 28 H 1.09001 * 109.47191 * 187.93913 * 1 2 3 29 29 H 1.09001 * 109.47491 * 240.00294 * 2 1 3 30 30 H 1.09007 * 109.46935 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47080 * 299.99863 * 3 2 1 32 32 H 1.08998 * 109.47231 * 60.00107 * 3 2 1 33 33 H 1.08998 * 109.47284 * 303.22126 * 4 2 1 34 34 H 1.08995 * 109.47108 * 183.21750 * 4 2 1 35 35 H 1.09006 * 109.47106 * 209.99859 * 6 5 4 36 36 H 1.09006 * 109.47286 * 329.99505 * 6 5 4 37 37 H 0.96998 * 120.00338 * 180.02562 * 10 9 7 38 38 H 0.96996 * 125.56227 * 298.55170 * 19 17 15 39 39 H 1.09003 * 109.46728 * 311.36423 * 25 23 22 40 40 H 1.08997 * 109.47471 * 71.35926 * 25 23 22 41 41 H 1.08992 * 109.47357 * 191.36505 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6160 -2.1230 1.2112 6 6 2.3553 -3.0899 0.3960 7 6 3.4542 -3.7073 1.2219 8 1 3.5882 -3.4094 2.2514 9 6 4.2878 -4.6530 0.6638 10 7 5.2466 -5.1922 1.3848 11 14 4.0556 -5.1687 -1.1166 12 1 4.8703 -4.2923 -1.9961 13 1 4.4896 -6.5790 -1.2841 14 1 2.6224 -5.0448 -1.4849 15 6 0.5425 -2.5218 1.9217 16 8 0.2186 -3.6906 1.9264 17 6 -0.2554 -1.5156 2.7103 18 1 -0.1864 -0.5294 2.2513 19 7 -1.6601 -1.9389 2.8167 20 6 -1.9633 -2.1146 4.1101 21 8 -3.0621 -2.4660 4.4917 22 8 -0.9459 -1.8678 4.9426 23 6 0.2282 -1.4663 4.1725 24 1 1.0468 -2.1691 4.3279 25 6 0.6597 -0.0471 4.5476 26 1 -0.3633 0.6319 0.8104 27 1 -0.3633 0.3859 -0.9525 28 1 -0.3633 -1.0178 0.1419 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6303 -0.2417 2.1383 34 1 3.1284 -0.6715 1.2786 35 1 1.6762 -3.8706 0.0531 36 1 2.7896 -2.5822 -0.4653 37 1 5.8333 -5.8572 0.9920 38 1 -2.2679 -2.0694 2.0721 39 1 -0.2079 0.6126 4.5314 40 1 1.0940 -0.0516 5.5474 41 1 1.4002 0.3088 3.8314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841384767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:22 Heat of formation + Delta-G solvation = -107.283169 kcal Electronic energy + Delta-G solvation = -24193.202022 eV Core-core repulsion = 20687.738092 eV Total energy + Delta-G solvation = -3505.463930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87600 -39.41831 -37.18232 -36.70944 -34.74012 -33.82908 -32.54636 -32.06173 -28.89694 -27.48553 -26.87051 -25.64288 -23.35243 -22.37681 -22.08088 -20.55483 -19.08120 -17.84250 -17.57071 -17.07438 -16.75777 -16.08420 -15.49475 -15.11861 -14.73160 -14.67003 -14.59500 -14.01445 -13.81036 -13.45512 -13.41374 -13.08555 -12.82770 -12.45333 -12.40284 -12.22525 -11.99849 -11.89497 -11.61736 -11.26066 -11.16946 -10.96137 -10.83326 -10.68333 -10.64168 -10.56918 -10.19470 -10.06786 -9.64641 -8.95621 -8.69374 -7.97138 -6.18855 -4.18913 2.53552 2.74298 2.82371 3.18235 3.23061 3.30284 3.31052 3.65450 4.08336 4.30078 4.39044 4.47620 4.73677 4.79278 4.85447 4.93661 5.10710 5.13466 5.16513 5.18081 5.46982 5.49159 5.56793 5.58896 5.70298 5.79148 5.81559 5.92679 6.03537 6.16751 6.26035 6.47830 6.71841 6.79401 7.06311 7.22696 7.47691 7.91366 8.09619 8.31943 8.60341 8.83039 9.40386 10.94192 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.006231 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.019049 B = 4492.737952 C = 5326.885860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.144 4.144 4 C 0.105 3.895 5 N -0.581 5.581 6 C 0.217 3.783 7 C -0.532 4.532 8 H 0.076 0.924 9 C 0.075 3.925 10 N -0.894 5.894 11 Si 0.873 3.127 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.497 3.503 16 O -0.516 6.516 17 C 0.068 3.932 18 H 0.125 0.875 19 N -0.710 5.710 20 C 0.653 3.347 21 O -0.527 6.527 22 O -0.321 6.321 23 C 0.080 3.920 24 H 0.124 0.876 25 C -0.163 4.163 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.041 0.959 36 H 0.029 0.971 37 H 0.266 0.734 38 H 0.436 0.564 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 16.297 -1.465 17.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.139 4.139 3 C -0.201 4.201 4 C -0.019 4.019 5 N -0.312 5.312 6 C 0.097 3.903 7 C -0.571 4.571 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.532 5.532 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.189 1.189 15 C 0.280 3.720 16 O -0.391 6.391 17 C -0.042 4.042 18 H 0.142 0.858 19 N -0.382 5.382 20 C 0.406 3.594 21 O -0.412 6.412 22 O -0.231 6.231 23 C 0.024 3.976 24 H 0.142 0.858 25 C -0.220 4.220 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.279 0.721 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.357 15.329 -0.869 17.025 hybrid contribution 0.008 -0.458 -1.488 1.556 sum -7.349 14.872 -2.356 16.755 Atomic orbital electron populations 1.21999 0.95732 1.01602 1.01701 1.21585 0.95838 0.96485 0.99965 1.21772 1.01483 0.95200 1.01694 1.21807 1.01753 0.81339 0.97026 1.47912 1.27769 1.09370 1.46120 1.19713 0.92168 0.87895 0.90536 1.21254 1.12744 1.23162 0.99922 0.90640 1.24839 0.94747 0.95426 0.97818 1.69881 1.18443 1.28228 1.36599 0.86896 0.79133 0.78607 0.85398 1.20017 1.20848 1.18916 1.20168 0.81788 0.88920 0.81086 1.90760 1.68545 1.17695 1.62073 1.22807 0.83307 1.00372 0.97695 0.85769 1.45646 1.11788 1.72599 1.08176 1.18399 0.84132 0.76316 0.80531 1.91055 1.19380 1.51649 1.79143 1.87342 1.21391 1.80906 1.33476 1.23889 0.87825 0.99924 0.85952 0.85786 1.22218 1.02702 0.92856 1.04198 0.92732 0.92396 0.92644 0.90182 0.92141 0.92579 0.92681 0.91138 0.89116 0.94119 0.95296 0.92425 0.72073 0.90984 0.89882 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.82 37.16 0.29 -1.16 16 2 C -0.12 -1.24 3.09 -90.61 -0.28 -1.52 16 3 C -0.14 -1.14 9.19 37.16 0.34 -0.80 16 4 C 0.10 1.31 4.86 -4.04 -0.02 1.29 16 5 N -0.58 -10.18 2.13 -175.06 -0.37 -10.55 16 6 C 0.22 4.81 4.21 -5.20 -0.02 4.79 16 7 C -0.53 -14.25 9.94 -34.44 -0.34 -14.60 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 10 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 11 Si 0.87 20.59 27.47 -169.99 -4.67 15.92 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 15 C 0.50 8.90 5.51 -10.99 -0.06 8.84 16 16 O -0.52 -11.90 16.33 5.56 0.09 -11.81 16 17 C 0.07 0.89 2.33 -68.19 -0.16 0.73 16 18 H 0.13 1.22 3.45 -51.93 -0.18 1.04 16 19 N -0.71 -9.89 5.75 -59.36 -0.34 -10.23 16 20 C 0.65 10.98 9.16 53.71 0.49 11.48 16 21 O -0.53 -10.47 18.04 -19.12 -0.34 -10.82 16 22 O -0.32 -5.06 10.81 -37.81 -0.41 -5.47 16 23 C 0.08 1.03 4.08 -26.16 -0.11 0.92 16 24 H 0.12 1.76 7.72 -51.93 -0.40 1.36 16 25 C -0.16 -1.37 9.40 37.16 0.35 -1.02 16 26 H 0.05 0.41 6.98 -51.93 -0.36 0.05 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.63 5.98 -51.93 -0.31 0.32 16 29 H 0.08 0.96 7.74 -51.93 -0.40 0.56 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.68 3.76 -51.93 -0.20 0.48 16 34 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.04 1.00 6.51 -51.93 -0.34 0.66 16 36 H 0.03 0.60 7.10 -51.93 -0.37 0.23 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.44 5.28 8.96 -40.82 -0.37 4.92 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.58 6.04 -51.93 -0.31 0.27 16 LS Contribution 327.89 15.07 4.94 4.94 Total: -1.00 -35.00 327.89 -5.73 -40.73 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.78 Total: 2.09 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 0.39 Total: 10.94 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.06 Total: -46.53 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.66 Total: -28.09 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.00 -5.73 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841384767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.549 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds