Wall clock time and date at job start Tue Mar 31 2020 06:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46961 * 2 1 4 4 C 1.53002 * 109.47217 * 119.99498 * 2 1 3 5 5 N 1.46506 * 109.46624 * 63.21878 * 4 2 1 6 6 C 1.46497 * 119.99781 * 80.00816 * 5 4 2 7 7 C 1.50698 * 109.47571 * 89.99740 * 6 5 4 8 8 H 1.08002 * 119.99610 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00352 * 179.97438 * 7 6 5 10 10 N 1.31519 * 120.00189 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00202 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47328 * 89.99656 * 11 9 7 13 13 H 1.48500 * 109.47268 * 209.99882 * 11 9 7 14 14 H 1.48503 * 109.46967 * 329.99699 * 11 9 7 15 15 C 1.34771 * 120.00074 * 260.27977 * 5 4 2 16 16 O 1.21282 * 119.99783 * 182.51251 * 15 5 4 17 17 C 1.50695 * 120.00024 * 2.51796 * 15 5 4 18 18 H 1.09000 * 110.50502 * 28.12735 * 17 15 5 19 19 N 1.47094 * 110.56783 * 150.87148 * 17 15 5 20 20 C 1.34006 * 108.88064 * 118.56960 * 19 17 15 21 21 O 1.21514 * 123.06902 * 180.02562 * 20 19 17 22 22 O 1.33761 * 113.85725 * 0.02562 * 20 19 17 23 23 C 1.46042 * 109.51282 * 0.08072 * 22 20 19 24 24 H 1.09000 * 110.56708 * 241.31563 * 23 22 20 25 25 C 1.53001 * 110.63676 * 118.47370 * 23 22 20 26 26 H 1.09001 * 109.47022 * 307.94511 * 1 2 3 27 27 H 1.09001 * 109.47011 * 67.94177 * 1 2 3 28 28 H 1.09001 * 109.47191 * 187.93913 * 1 2 3 29 29 H 1.09001 * 109.47491 * 240.00294 * 2 1 3 30 30 H 1.09007 * 109.46935 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47080 * 299.99863 * 3 2 1 32 32 H 1.08998 * 109.47231 * 60.00107 * 3 2 1 33 33 H 1.08998 * 109.47284 * 303.22126 * 4 2 1 34 34 H 1.08995 * 109.47108 * 183.21750 * 4 2 1 35 35 H 1.09006 * 109.47106 * 209.99859 * 6 5 4 36 36 H 1.09006 * 109.47286 * 329.99505 * 6 5 4 37 37 H 0.96998 * 120.00338 * 180.02562 * 10 9 7 38 38 H 0.96996 * 125.56227 * 298.55170 * 19 17 15 39 39 H 1.09003 * 109.46728 * 311.36423 * 25 23 22 40 40 H 1.08997 * 109.47471 * 71.35926 * 25 23 22 41 41 H 1.08992 * 109.47357 * 191.36505 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6160 -2.1230 1.2112 6 6 2.3553 -3.0899 0.3960 7 6 3.4542 -3.7073 1.2219 8 1 3.5882 -3.4094 2.2514 9 6 4.2878 -4.6530 0.6638 10 7 5.2466 -5.1922 1.3848 11 14 4.0556 -5.1687 -1.1166 12 1 4.8703 -4.2923 -1.9961 13 1 4.4896 -6.5790 -1.2841 14 1 2.6224 -5.0448 -1.4849 15 6 0.5425 -2.5218 1.9217 16 8 0.2186 -3.6906 1.9264 17 6 -0.2554 -1.5156 2.7103 18 1 -0.1864 -0.5294 2.2513 19 7 -1.6601 -1.9389 2.8167 20 6 -1.9633 -2.1146 4.1101 21 8 -3.0621 -2.4660 4.4917 22 8 -0.9459 -1.8678 4.9426 23 6 0.2282 -1.4663 4.1725 24 1 1.0468 -2.1691 4.3279 25 6 0.6597 -0.0471 4.5476 26 1 -0.3633 0.6319 0.8104 27 1 -0.3633 0.3859 -0.9525 28 1 -0.3633 -1.0178 0.1419 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6303 -0.2417 2.1383 34 1 3.1284 -0.6715 1.2786 35 1 1.6762 -3.8706 0.0531 36 1 2.7896 -2.5822 -0.4653 37 1 5.8333 -5.8572 0.9920 38 1 -2.2679 -2.0694 2.0721 39 1 -0.2079 0.6126 4.5314 40 1 1.0940 -0.0516 5.5474 41 1 1.4002 0.3088 3.8314 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841384767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:21 Heat of formation + Delta-G solvation = -134.394688 kcal Electronic energy + Delta-G solvation = -24194.377666 eV Core-core repulsion = 20687.738092 eV Total energy + Delta-G solvation = -3506.639574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.11067 -40.81564 -38.53005 -37.93370 -36.03021 -35.30081 -34.25160 -33.17803 -30.55353 -28.49950 -27.73422 -26.84179 -24.74899 -23.80233 -23.37805 -21.52110 -20.40375 -19.11076 -19.07986 -18.77516 -18.08360 -17.43183 -16.95739 -16.42904 -16.26412 -15.73523 -15.59652 -15.49825 -15.03392 -14.61939 -14.51009 -14.47953 -14.14426 -13.81295 -13.57412 -13.18595 -13.05306 -12.82240 -12.73843 -12.61646 -12.47832 -12.29649 -12.04589 -11.95226 -11.88325 -11.80234 -11.70507 -11.45706 -11.44606 -10.82240 -10.30572 -9.50093 -8.34148 -6.38863 1.23879 1.30572 1.36032 1.39485 1.44715 1.58909 1.97618 2.29908 2.44005 2.94177 3.00101 3.22591 3.47006 3.77114 3.87466 3.97931 4.01913 4.17373 4.29390 4.39579 4.66097 4.74613 4.80226 4.81900 4.84913 4.90381 4.97593 5.08868 5.12675 5.20348 5.35060 5.39504 5.46258 5.52762 5.57543 5.59940 5.99057 6.20320 6.50320 6.63496 6.83622 7.11850 7.27461 8.82277 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.015381 B = 0.006231 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.019049 B = 4492.737952 C = 5326.885860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.139 4.139 4 C 0.095 3.905 5 N -0.580 5.580 6 C 0.226 3.774 7 C -0.533 4.533 8 H 0.036 0.964 9 C 0.014 3.986 10 N -0.943 5.943 11 Si 0.940 3.060 12 H -0.249 1.249 13 H -0.287 1.287 14 H -0.257 1.257 15 C 0.492 3.508 16 O -0.578 6.578 17 C 0.084 3.916 18 H 0.169 0.831 19 N -0.698 5.698 20 C 0.651 3.349 21 O -0.564 6.564 22 O -0.332 6.332 23 C 0.074 3.926 24 H 0.102 0.898 25 C -0.157 4.157 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.017 0.983 36 H 0.052 0.948 37 H 0.267 0.733 38 H 0.445 0.555 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 19.549 -2.795 21.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.134 4.134 3 C -0.197 4.197 4 C -0.026 4.026 5 N -0.310 5.310 6 C 0.104 3.896 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.185 4.185 10 N -0.583 5.583 11 Si 0.763 3.237 12 H -0.174 1.174 13 H -0.212 1.212 14 H -0.181 1.181 15 C 0.278 3.722 16 O -0.458 6.458 17 C -0.025 4.025 18 H 0.186 0.814 19 N -0.369 5.369 20 C 0.404 3.596 21 O -0.452 6.452 22 O -0.242 6.242 23 C 0.018 3.982 24 H 0.120 0.880 25 C -0.213 4.213 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.289 0.711 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.849 18.660 -2.219 20.365 hybrid contribution 0.232 -1.468 -0.998 1.791 sum -7.617 17.192 -3.217 19.077 Atomic orbital electron populations 1.22027 0.94711 1.00856 1.03590 1.21538 0.96659 0.97665 0.97574 1.21750 1.01305 0.93253 1.03373 1.22197 1.01678 0.78729 1.00025 1.47921 1.27165 1.10787 1.45098 1.19334 0.90575 0.88635 0.91065 1.21527 1.13801 1.23162 0.98717 0.94573 1.25774 0.94416 0.95542 1.02738 1.70037 1.19906 1.29425 1.38933 0.85826 0.79715 0.78225 0.79912 1.17355 1.21247 1.18079 1.20980 0.81719 0.89009 0.80493 1.90730 1.70252 1.20594 1.64176 1.22889 0.81844 1.00292 0.97453 0.81388 1.45612 1.12114 1.71637 1.07581 1.18511 0.83898 0.76003 0.81178 1.91019 1.21017 1.53322 1.79871 1.87327 1.21877 1.80946 1.34081 1.24206 0.86258 1.02447 0.85306 0.87986 1.22301 1.04084 0.89538 1.05391 0.89985 0.91213 0.94906 0.92180 0.92506 0.91573 0.90376 0.87704 0.90025 0.96455 0.92977 0.92359 0.71079 0.88973 0.89043 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 7.82 71.98 0.56 -1.76 16 2 C -0.11 -2.01 3.09 -10.79 -0.03 -2.05 16 3 C -0.14 -1.60 9.19 71.98 0.66 -0.94 16 4 C 0.10 2.15 4.86 86.38 0.42 2.57 16 5 N -0.58 -19.98 2.13 -826.15 -1.76 -21.75 16 6 C 0.23 10.05 4.21 85.63 0.36 10.41 16 7 C -0.53 -29.41 9.94 25.60 0.25 -29.15 16 8 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 9 C 0.01 0.77 5.47 84.65 0.46 1.24 16 10 N -0.94 -57.75 13.96 21.45 0.30 -57.45 16 11 Si 0.94 42.70 27.47 68.60 1.88 44.59 16 12 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 13 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 14 H -0.26 -11.24 6.54 99.48 0.65 -10.59 16 15 C 0.49 17.53 5.51 87.66 0.48 18.01 16 16 O -0.58 -27.53 16.33 -3.04 -0.05 -27.58 16 17 C 0.08 2.04 2.33 44.50 0.10 2.15 16 18 H 0.17 2.56 3.45 -2.39 -0.01 2.55 16 19 N -0.70 -18.58 5.75 -573.43 -3.30 -21.87 16 20 C 0.65 21.56 9.16 129.91 1.19 22.75 16 21 O -0.56 -22.52 18.04 19.64 0.35 -22.17 16 22 O -0.33 -10.23 10.81 -47.22 -0.51 -10.74 16 23 C 0.07 1.77 4.08 30.96 0.13 1.89 16 24 H 0.10 2.92 7.72 -2.39 -0.02 2.90 16 25 C -0.16 -2.01 9.40 71.98 0.68 -1.33 16 26 H 0.08 0.77 6.98 -2.39 -0.02 0.75 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.03 0.65 5.98 -2.39 -0.01 0.63 16 29 H 0.06 1.31 7.74 -2.39 -0.02 1.29 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 1.58 3.76 -2.39 -0.01 1.57 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.02 0.86 6.51 -2.38 -0.02 0.85 16 36 H 0.05 2.09 7.10 -2.38 -0.02 2.07 16 37 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.44 10.24 8.96 -92.71 -0.83 9.41 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 0.90 6.04 -2.39 -0.01 0.88 16 Total: -1.00 -81.70 327.89 2.35 -79.35 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: 0.17 Total: 13.83 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 5.27 Total: 23.80 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -4.76 Total: -101.08 kcal Atomic # 8 Polarization: -60.28 SS G_CDS: -0.21 Total: -60.49 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.88 Total: 44.59 kcal Total: -81.70 2.35 -79.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841384767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.049 kcal (2) G-P(sol) polarization free energy of solvation -81.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds