Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00363 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99993 * 179.97438 * 13 12 11 16 16 C 1.46504 * 120.00240 * 179.97438 * 15 13 12 17 17 H 1.09005 * 109.39763 * 35.17529 * 16 15 13 18 18 C 1.53071 * 109.40077 * 154.99709 * 16 15 13 19 19 C 1.53345 * 108.42586 * 169.03043 * 18 16 15 20 20 C 1.52920 * 108.67384 * 292.47348 * 19 18 16 21 21 N 1.45759 * 110.49008 * 50.75151 * 20 19 18 22 22 O 1.41592 * 117.94628 * 160.92604 * 21 20 19 23 23 C 1.33357 * 124.10224 * 340.92566 * 21 20 19 24 24 O 1.21278 * 118.23986 * 182.22612 * 23 21 20 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 29 29 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 31 31 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 32 32 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 33 33 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 34 34 H 0.97005 * 119.99841 * 0.02562 * 15 13 12 35 35 H 1.08995 * 109.67589 * 288.76825 * 18 16 15 36 36 H 1.09001 * 109.67378 * 49.26328 * 18 16 15 37 37 H 1.09006 * 109.60094 * 52.22373 * 19 18 16 38 38 H 1.08999 * 109.60660 * 172.54879 * 19 18 16 39 39 H 1.09002 * 109.30091 * 171.06363 * 20 19 18 40 40 H 1.08997 * 109.30229 * 290.43785 * 20 19 18 41 41 H 0.96707 * 114.00154 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 6 1.7209 -7.4551 -0.0018 14 8 0.5081 -7.4552 -0.0009 15 7 2.3948 -8.6223 -0.0029 16 6 1.6623 -9.8911 -0.0023 17 1 0.7527 -9.7843 -0.5935 18 6 2.5405 -10.9855 -0.6138 19 6 1.8746 -12.3424 -0.3551 20 6 1.9158 -12.6298 1.1462 21 7 1.3993 -11.4927 1.8978 22 8 0.9782 -11.7147 3.2313 23 6 1.2984 -10.2564 1.4081 24 8 0.8911 -9.3803 2.1411 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 2.8719 -3.6044 -0.8906 29 1 2.8719 -3.6044 0.8894 30 1 0.8533 -5.0451 0.8886 31 1 0.8539 -5.0446 -0.8913 32 1 3.1010 -6.0919 -0.8918 33 1 3.1012 -6.0927 0.8881 34 1 3.3648 -8.6223 -0.0032 35 1 2.6361 -10.8223 -1.6872 36 1 3.5270 -10.9661 -0.1505 37 1 0.8387 -12.3117 -0.6932 38 1 2.4122 -13.1224 -0.8942 39 1 1.3092 -13.5094 1.3615 40 1 2.9452 -12.8233 1.4479 41 1 0.6458 -10.9229 3.6759 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848131658.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = -121.454345 kcal Electronic energy + Delta-G solvation = -22126.822751 eV Core-core repulsion = 18620.744313 eV Total energy + Delta-G solvation = -3506.078438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.95667 -40.39457 -37.77111 -37.36766 -36.58748 -35.07813 -34.60352 -32.08157 -31.41065 -29.96499 -27.45851 -25.35774 -24.22684 -23.69108 -21.82942 -21.41843 -20.63053 -19.02713 -18.46488 -18.32221 -17.85837 -17.54847 -16.76228 -16.52434 -16.30540 -15.72044 -15.43928 -15.19491 -14.92497 -14.84854 -14.52463 -14.50866 -13.74409 -13.61057 -13.54125 -13.31859 -13.08924 -12.78254 -12.60412 -12.42952 -12.35885 -12.16873 -12.12806 -11.91054 -11.43284 -11.36897 -11.35670 -11.17792 -10.78234 -10.54663 -10.20363 -9.81641 -8.18551 -6.31211 0.78551 1.20056 1.40004 1.44663 1.52461 1.70076 2.18502 2.42269 3.13850 3.14817 3.53596 3.57319 3.80580 3.90622 4.03238 4.09596 4.14570 4.24249 4.42993 4.63524 4.68774 4.72885 4.79567 4.82998 4.87475 4.98545 5.03785 5.17550 5.18576 5.30996 5.33088 5.38831 5.56420 5.67211 5.77498 5.87571 6.24838 6.26822 6.48029 6.86928 6.87198 7.26894 7.38380 8.93742 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.041970 B = 0.002485 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.977359 B =11262.901579 C =11549.115578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.126 4.126 13 C 0.515 3.485 14 O -0.575 6.575 15 N -0.705 5.705 16 C 0.145 3.855 17 H 0.107 0.893 18 C -0.123 4.123 19 C -0.124 4.124 20 C 0.120 3.880 21 N -0.457 5.457 22 O -0.352 6.352 23 C 0.474 3.526 24 O -0.587 6.587 25 H 0.263 0.737 26 H -0.020 1.020 27 H -0.014 1.014 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.424 0.576 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.861 -31.907 -3.007 34.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.211 1.211 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.165 4.165 13 C 0.303 3.697 14 O -0.453 6.453 15 N -0.360 5.360 16 C 0.035 3.965 17 H 0.124 0.876 18 C -0.161 4.161 19 C -0.162 4.162 20 C 0.002 3.998 21 N -0.233 5.233 22 O -0.248 6.248 23 C 0.261 3.739 24 O -0.467 6.467 25 H 0.072 0.928 26 H -0.001 1.001 27 H 0.004 0.996 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.130 0.870 34 H 0.263 0.737 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.162 0.838 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.849 -31.982 -2.793 33.887 hybrid contribution -0.493 1.662 0.951 1.977 sum 10.356 -30.320 -1.842 32.093 Atomic orbital electron populations 1.70139 1.08161 1.27845 1.51832 1.26136 0.95800 1.03872 0.94741 0.85403 0.78136 0.77505 0.79400 1.21082 1.18967 1.18668 1.21730 0.93781 0.92158 1.50365 0.91436 1.19058 0.94706 0.93916 0.94199 1.21442 0.97785 0.92555 1.01407 1.21248 0.97553 0.93891 1.00799 1.21660 0.98880 0.89191 1.06782 1.21264 0.87880 0.86800 0.73721 1.90704 1.16632 1.88115 1.49836 1.45674 1.10959 1.03503 1.75846 1.20907 0.99666 0.86359 0.89519 0.87553 1.22101 0.98828 0.91154 1.04006 1.22012 1.03566 0.98336 0.92278 1.21965 1.00698 0.86266 0.90898 1.49240 1.61938 1.09773 1.02360 1.88915 1.86774 1.36023 1.13109 1.21983 0.78456 0.81329 0.92096 1.90787 1.48402 1.47946 1.59582 0.92843 1.00148 0.99575 0.91504 0.92346 0.94797 0.93479 0.85266 0.87022 0.73749 0.86644 0.88076 0.90495 0.83795 0.88535 0.88698 0.75037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.45 13.29 21.45 0.28 -60.16 16 2 C -0.01 -0.51 5.46 84.66 0.46 -0.04 16 3 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.54 -32.16 9.11 25.60 0.23 -31.92 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.70 16 9 C 0.02 1.04 4.97 29.85 0.15 1.19 16 10 C -0.09 -4.01 5.15 30.59 0.16 -3.85 16 11 C -0.10 -3.73 4.50 30.59 0.14 -3.59 16 12 C -0.13 -3.30 5.70 29.85 0.17 -3.13 16 13 C 0.51 14.99 7.25 87.66 0.64 15.62 16 14 O -0.57 -23.30 15.18 -1.30 -0.02 -23.32 16 15 N -0.70 -13.03 4.97 -446.78 -2.22 -15.25 16 16 C 0.14 2.45 2.70 44.10 0.12 2.57 16 17 H 0.11 2.23 7.58 -2.38 -0.02 2.21 16 18 C -0.12 -0.51 5.51 30.73 0.17 -0.34 16 19 C -0.12 -0.21 6.02 30.68 0.18 -0.02 16 20 C 0.12 0.83 6.79 86.49 0.59 1.42 16 21 N -0.46 -8.30 4.00 -467.32 -1.87 -10.17 16 22 O -0.35 -7.49 14.85 -19.11 -0.28 -7.77 16 23 C 0.47 11.26 7.34 87.71 0.64 11.91 16 24 O -0.59 -20.62 15.06 19.69 0.30 -20.33 16 25 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 26 H -0.02 -1.25 8.14 -2.38 -0.02 -1.27 16 27 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 28 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.03 1.48 8.10 -2.39 -0.02 1.46 16 31 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 32 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.42 4.22 8.58 -92.70 -0.80 3.43 16 35 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.10 0.10 8.10 -2.39 -0.02 0.08 16 37 H 0.08 0.27 8.12 -2.38 -0.02 0.25 16 38 H 0.14 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.40 8.55 7.69 -74.05 -0.57 7.98 16 Total: -1.00 -91.74 342.45 1.54 -90.21 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -0.33 Total: 9.43 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: 3.65 Total: -10.18 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -3.80 Total: -85.58 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.01 Total: -51.42 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -91.74 1.54 -90.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848131658.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.248 kcal (2) G-P(sol) polarization free energy of solvation -91.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds