Wall clock time and date at job start Tue Mar 31 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46614 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00307 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99808 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00431 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.40067 * 325.00310 * 16 15 13 18 18 C 1.53067 * 109.40644 * 205.17168 * 16 15 13 19 19 C 1.53348 * 108.42539 * 190.97075 * 18 16 15 20 20 C 1.52915 * 108.67529 * 67.53495 * 19 18 16 21 21 N 1.45756 * 110.48559 * 309.24456 * 20 19 18 22 22 O 1.41598 * 117.94793 * 199.07653 * 21 20 19 23 23 C 1.33233 * 124.07019 * 19.15577 * 21 20 19 24 24 O 1.21283 * 118.15922 * 177.70645 * 23 21 20 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 31 31 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 32 32 H 1.08998 * 109.47018 * 300.00053 * 12 11 10 33 33 H 1.09002 * 109.47113 * 60.00475 * 12 11 10 34 34 H 0.97005 * 119.99841 * 359.97438 * 15 13 12 35 35 H 1.08997 * 109.67359 * 310.70793 * 18 16 15 36 36 H 1.09004 * 109.67202 * 71.23835 * 18 16 15 37 37 H 1.09004 * 109.60007 * 187.28549 * 19 18 16 38 38 H 1.08994 * 109.60303 * 307.77607 * 19 18 16 39 39 H 1.09000 * 109.30162 * 69.55675 * 20 19 18 40 40 H 1.08997 * 109.30423 * 189.14284 * 20 19 18 41 41 H 0.96695 * 114.00347 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 6 2.4745 -6.1500 0.0288 13 6 1.7209 -7.4551 0.0345 14 8 0.5082 -7.4550 0.0336 15 7 2.3948 -8.6222 0.0407 16 6 1.6624 -9.8909 0.0468 17 1 0.7517 -9.7805 0.6356 18 6 2.5394 -10.9815 0.6668 19 6 1.8738 -12.3400 0.4154 20 6 1.9180 -12.6369 -1.0840 21 7 1.4029 -11.5046 -1.8436 22 8 0.9843 -11.7349 -3.1766 23 6 1.3029 -10.2663 -1.3622 24 8 0.8979 -9.3953 -2.1026 25 1 -0.4850 0.8401 -0.0041 26 1 0.6241 -2.5528 0.9015 27 1 0.6247 -2.5609 -0.8785 28 1 2.8719 -3.6083 -0.8736 29 1 2.8719 -3.6004 0.9064 30 1 0.8539 -5.0406 0.9135 31 1 0.8533 -5.0490 -0.8665 32 1 3.1012 -6.0966 -0.8614 33 1 3.1011 -6.0879 0.9186 34 1 3.3648 -8.6222 0.0411 35 1 3.5265 -10.9654 0.2047 36 1 2.6330 -10.8116 1.7394 37 1 2.4123 -13.1170 0.9580 38 1 0.8375 -12.3072 0.7513 39 1 2.9480 -12.8323 -1.3824 40 1 1.3088 -13.5156 -1.2954 41 1 0.6535 -10.9458 -3.6269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848131659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:06 Heat of formation + Delta-G solvation = -91.378712 kcal Electronic energy + Delta-G solvation = -22124.926973 eV Core-core repulsion = 18620.152712 eV Total energy + Delta-G solvation = -3504.774261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12951 -39.31118 -37.03791 -36.51186 -34.85174 -34.18969 -32.58320 -31.24839 -30.06432 -28.95596 -25.79387 -24.45029 -23.43741 -22.22407 -20.51072 -20.02452 -19.84829 -18.23382 -17.61459 -16.79685 -16.77242 -16.11968 -15.61252 -15.43889 -15.00488 -14.56959 -14.41531 -14.32217 -14.10157 -13.76615 -13.60748 -12.79088 -12.65912 -12.53714 -12.19365 -12.09191 -11.96905 -11.63892 -11.60825 -11.49343 -10.96190 -10.55440 -10.48181 -10.45197 -10.36188 -9.79250 -9.56348 -9.26578 -9.17632 -9.05310 -8.92939 -8.27113 -5.91707 -3.94006 1.50163 2.08704 2.78835 3.04087 3.35606 3.42562 3.46656 3.84518 3.99549 4.04043 4.22675 4.51937 4.54046 4.72237 4.74510 4.90913 5.11453 5.12569 5.20898 5.29121 5.37190 5.42586 5.44300 5.49125 5.90197 6.08620 6.19937 6.36149 6.41830 6.60399 6.90112 7.05345 7.08111 7.24567 7.35082 7.72485 7.78773 7.95180 8.10369 8.28083 8.52049 9.14076 9.69422 11.19715 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042007 B = 0.002484 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.390007 B =11267.319030 C =11553.044237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.135 4.135 13 C 0.518 3.482 14 O -0.517 6.517 15 N -0.725 5.725 16 C 0.147 3.853 17 H 0.125 0.875 18 C -0.135 4.135 19 C -0.131 4.131 20 C 0.134 3.866 21 N -0.464 5.464 22 O -0.339 6.339 23 C 0.482 3.518 24 O -0.527 6.527 25 H 0.259 0.741 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.404 0.596 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 -30.358 1.905 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.175 4.175 13 C 0.306 3.694 14 O -0.390 6.390 15 N -0.380 5.380 16 C 0.038 3.962 17 H 0.142 0.858 18 C -0.173 4.173 19 C -0.170 4.170 20 C 0.014 3.986 21 N -0.242 5.242 22 O -0.235 6.235 23 C 0.268 3.732 24 O -0.402 6.402 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.239 0.761 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.209 -30.342 1.678 31.232 hybrid contribution 0.646 1.297 -0.546 1.549 sum 7.854 -29.045 1.132 30.110 Atomic orbital electron populations 1.69991 1.06048 1.26358 1.51091 1.25054 0.94838 0.99235 0.95525 0.86556 0.80071 0.83958 0.77522 1.19790 1.21070 1.21069 1.21326 0.93006 0.91201 1.50162 0.92712 1.19104 0.94086 0.91275 0.97340 1.21646 0.99062 0.93995 1.00033 1.21461 0.97035 0.92639 1.03041 1.21777 1.00098 0.91688 1.03970 1.21136 0.88568 0.85314 0.74369 1.90715 1.14175 1.87238 1.46874 1.45912 1.09971 1.04205 1.77923 1.20664 0.98976 0.85419 0.91155 0.85786 1.22046 0.99254 0.92951 1.03009 1.21930 1.03246 0.97927 0.93878 1.21444 0.99658 0.87688 0.89780 1.48782 1.63401 1.09052 1.02926 1.88950 1.86877 1.35664 1.12040 1.21385 0.79128 0.81218 0.91442 1.90815 1.45549 1.46454 1.57371 0.93120 0.96576 0.96567 0.93487 0.93490 0.91793 0.91708 0.89105 0.89050 0.76143 0.90030 0.88868 0.87800 0.89914 0.90759 0.89470 0.75023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.29 55.43 0.74 -27.26 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 11 C -0.10 -1.94 4.50 -26.73 -0.12 -2.07 16 12 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 13 C 0.52 7.58 7.26 -10.99 -0.08 7.50 16 14 O -0.52 -9.95 15.20 4.26 0.06 -9.89 16 15 N -0.73 -7.28 4.96 -55.15 -0.27 -7.55 16 16 C 0.15 1.33 2.70 -69.30 -0.19 1.15 16 17 H 0.12 1.28 7.57 -51.93 -0.39 0.89 16 18 C -0.13 -0.53 5.50 -26.52 -0.15 -0.68 16 19 C -0.13 -0.36 6.02 -26.59 -0.16 -0.52 16 20 C 0.13 0.65 6.79 -4.49 -0.03 0.62 16 21 N -0.46 -4.40 4.00 -61.42 -0.25 -4.64 16 22 O -0.34 -3.55 14.85 -32.07 -0.48 -4.03 16 23 C 0.48 5.70 7.33 -11.92 -0.09 5.62 16 24 O -0.53 -8.77 15.08 -17.97 -0.27 -9.04 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 2.66 8.58 -40.82 -0.35 2.31 16 35 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.02 8.14 -51.93 -0.42 -0.41 16 38 H 0.08 0.26 8.12 -51.93 -0.42 -0.16 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.40 3.94 7.68 45.56 0.35 4.29 16 LS Contribution 342.48 15.07 5.16 5.16 Total: -1.00 -39.21 342.48 -7.83 -47.04 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.85 Total: -0.46 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.66 Total: -6.52 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.22 Total: -39.46 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.68 Total: -22.96 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -39.21 -7.83 -47.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848131659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.335 kcal (2) G-P(sol) polarization free energy of solvation -39.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds