Wall clock time and date at job start Tue Mar 31 2020 05:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46614 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00307 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99808 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00431 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.40067 * 325.00310 * 16 15 13 18 18 C 1.53067 * 109.40644 * 205.17168 * 16 15 13 19 19 C 1.53348 * 108.42539 * 190.97075 * 18 16 15 20 20 C 1.52915 * 108.67529 * 67.53495 * 19 18 16 21 21 N 1.45756 * 110.48559 * 309.24456 * 20 19 18 22 22 O 1.41598 * 117.94793 * 199.07653 * 21 20 19 23 23 C 1.33233 * 124.07019 * 19.15577 * 21 20 19 24 24 O 1.21283 * 118.15922 * 177.70645 * 23 21 20 25 25 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 26 26 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 27 27 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 28 28 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 29 29 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 30 30 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 31 31 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 32 32 H 1.08998 * 109.47018 * 300.00053 * 12 11 10 33 33 H 1.09002 * 109.47113 * 60.00475 * 12 11 10 34 34 H 0.97005 * 119.99841 * 359.97438 * 15 13 12 35 35 H 1.08997 * 109.67359 * 310.70793 * 18 16 15 36 36 H 1.09004 * 109.67202 * 71.23835 * 18 16 15 37 37 H 1.09004 * 109.60007 * 187.28549 * 19 18 16 38 38 H 1.08994 * 109.60303 * 307.77607 * 19 18 16 39 39 H 1.09000 * 109.30162 * 69.55675 * 20 19 18 40 40 H 1.08997 * 109.30423 * 189.14284 * 20 19 18 41 41 H 0.96695 * 114.00347 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 6 2.4745 -6.1500 0.0288 13 6 1.7209 -7.4551 0.0345 14 8 0.5082 -7.4550 0.0336 15 7 2.3948 -8.6222 0.0407 16 6 1.6624 -9.8909 0.0468 17 1 0.7517 -9.7805 0.6356 18 6 2.5394 -10.9815 0.6668 19 6 1.8738 -12.3400 0.4154 20 6 1.9180 -12.6369 -1.0840 21 7 1.4029 -11.5046 -1.8436 22 8 0.9843 -11.7349 -3.1766 23 6 1.3029 -10.2663 -1.3622 24 8 0.8979 -9.3953 -2.1026 25 1 -0.4850 0.8401 -0.0041 26 1 0.6241 -2.5528 0.9015 27 1 0.6247 -2.5609 -0.8785 28 1 2.8719 -3.6083 -0.8736 29 1 2.8719 -3.6004 0.9064 30 1 0.8539 -5.0406 0.9135 31 1 0.8533 -5.0490 -0.8665 32 1 3.1012 -6.0966 -0.8614 33 1 3.1011 -6.0879 0.9186 34 1 3.3648 -8.6222 0.0411 35 1 3.5265 -10.9654 0.2047 36 1 2.6330 -10.8116 1.7394 37 1 2.4123 -13.1170 0.9580 38 1 0.8375 -12.3072 0.7513 39 1 2.9480 -12.8323 -1.3824 40 1 1.3088 -13.5156 -1.2954 41 1 0.6535 -10.9458 -3.6269 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848131659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:05 Heat of formation + Delta-G solvation = -121.451247 kcal Electronic energy + Delta-G solvation = -22126.231016 eV Core-core repulsion = 18620.152712 eV Total energy + Delta-G solvation = -3506.078304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96357 -40.40018 -37.76974 -37.36975 -36.58864 -35.08072 -34.60480 -32.08562 -31.41316 -29.96600 -27.46121 -25.36011 -24.22507 -23.69266 -21.83014 -21.41934 -20.63134 -19.02833 -18.47095 -18.32619 -17.85855 -17.54853 -16.76300 -16.51967 -16.30537 -15.72020 -15.44000 -15.19671 -14.92502 -14.84972 -14.54118 -14.50523 -13.74579 -13.59921 -13.54029 -13.32368 -13.09075 -12.84157 -12.59910 -12.42836 -12.30207 -12.16198 -12.14080 -11.91294 -11.43332 -11.37196 -11.35833 -11.15451 -10.78124 -10.56252 -10.20369 -9.82005 -8.18996 -6.31410 0.78459 1.20377 1.40048 1.41531 1.55035 1.70050 2.18522 2.41969 3.13645 3.14895 3.53784 3.57297 3.80562 3.90769 4.03281 4.09578 4.14612 4.24307 4.42892 4.63557 4.68811 4.72870 4.79454 4.83022 4.87539 4.98584 5.03656 5.17519 5.18597 5.30985 5.33088 5.38946 5.56703 5.67066 5.77478 5.87619 6.24786 6.27125 6.48010 6.87055 6.87396 7.26860 7.38271 8.93710 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.042007 B = 0.002484 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.390007 B =11267.319030 C =11553.044237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.972 3.028 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.094 4.094 11 C -0.097 4.097 12 C -0.126 4.126 13 C 0.515 3.485 14 O -0.575 6.575 15 N -0.705 5.705 16 C 0.145 3.855 17 H 0.107 0.893 18 C -0.123 4.123 19 C -0.124 4.124 20 C 0.119 3.881 21 N -0.457 5.457 22 O -0.351 6.351 23 C 0.474 3.526 24 O -0.588 6.588 25 H 0.263 0.737 26 H -0.014 1.014 27 H -0.020 1.020 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.112 0.888 33 H 0.129 0.871 34 H 0.424 0.576 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.861 -31.922 3.169 34.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.796 3.204 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.019 4.019 10 C -0.132 4.132 11 C -0.135 4.135 12 C -0.165 4.165 13 C 0.303 3.697 14 O -0.453 6.453 15 N -0.360 5.360 16 C 0.036 3.964 17 H 0.125 0.875 18 C -0.161 4.161 19 C -0.162 4.162 20 C 0.001 3.999 21 N -0.233 5.233 22 O -0.248 6.248 23 C 0.261 3.739 24 O -0.468 6.468 25 H 0.071 0.929 26 H 0.004 0.996 27 H -0.001 1.001 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.130 0.870 33 H 0.147 0.853 34 H 0.262 0.738 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.162 0.838 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 10.857 -32.003 2.957 33.924 hybrid contribution -0.510 1.669 -0.961 1.992 sum 10.347 -30.334 1.996 32.113 Atomic orbital electron populations 1.70152 1.08153 1.27707 1.51995 1.26137 0.95803 1.03878 0.94786 0.85298 0.79201 0.78237 0.77681 1.17966 1.20565 1.20339 1.21783 0.93777 0.92134 1.50083 0.91448 1.19067 0.94720 0.93938 0.94221 1.21442 0.97782 0.92555 1.01410 1.21250 0.97551 0.93888 1.00802 1.21663 0.98881 0.89191 1.06780 1.21264 0.87878 0.86800 0.73715 1.90701 1.16637 1.88116 1.49840 1.45671 1.10959 1.03499 1.75848 1.20905 0.99691 0.86323 0.89515 0.87534 1.22106 0.98850 0.91210 1.03943 1.22018 1.03559 0.98282 0.92331 1.21986 1.00721 0.86412 0.90733 1.49209 1.61976 1.09674 1.02397 1.88915 1.86901 1.35887 1.13096 1.21962 0.78452 0.81329 0.92158 1.90788 1.48478 1.48463 1.59081 0.92854 0.99552 1.00124 0.92348 0.91507 0.93474 0.94793 0.87025 0.85263 0.73753 0.88077 0.86644 0.83799 0.90474 0.88667 0.88540 0.75032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.40 13.29 21.45 0.28 -60.11 16 2 C -0.01 -0.55 5.46 84.66 0.46 -0.09 16 3 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.54 -31.98 9.11 25.60 0.23 -31.75 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.09 -4.00 5.15 30.59 0.16 -3.85 16 11 C -0.10 -3.72 4.50 30.60 0.14 -3.58 16 12 C -0.13 -3.30 5.70 29.85 0.17 -3.13 16 13 C 0.51 14.98 7.26 87.66 0.64 15.62 16 14 O -0.58 -23.29 15.20 -1.77 -0.03 -23.32 16 15 N -0.70 -13.03 4.96 -446.79 -2.22 -15.25 16 16 C 0.14 2.46 2.70 44.11 0.12 2.58 16 17 H 0.11 2.23 7.57 -2.39 -0.02 2.21 16 18 C -0.12 -0.51 5.50 30.73 0.17 -0.34 16 19 C -0.12 -0.21 6.02 30.68 0.18 -0.02 16 20 C 0.12 0.83 6.79 86.49 0.59 1.42 16 21 N -0.46 -8.29 4.00 -467.48 -1.87 -10.16 16 22 O -0.35 -7.48 14.85 -19.09 -0.28 -7.76 16 23 C 0.47 11.25 7.33 87.73 0.64 11.89 16 24 O -0.59 -20.64 15.08 19.45 0.29 -20.35 16 25 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 31 H 0.03 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.42 4.23 8.58 -92.70 -0.80 3.43 16 35 H 0.10 0.10 8.10 -2.39 -0.02 0.08 16 36 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.14 -0.77 8.14 -2.38 -0.02 -0.79 16 38 H 0.08 0.27 8.12 -2.39 -0.02 0.25 16 39 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.10 0.53 8.14 -2.39 -0.02 0.52 16 41 H 0.40 8.55 7.68 -74.06 -0.57 7.98 16 Total: -1.00 -91.77 342.48 1.53 -90.24 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.33 Total: 9.21 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 3.65 Total: -10.11 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -3.80 Total: -85.52 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.02 Total: -51.42 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -91.77 1.53 -90.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848131659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.210 kcal (2) G-P(sol) polarization free energy of solvation -91.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds