Wall clock time and date at job start Tue Mar 31 2020 05:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48497 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46636 * 299.99998 * 3 2 1 6 6 H 1.48495 * 109.47132 * 59.99749 * 3 2 1 7 7 C 1.37874 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00354 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9 13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9 14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11 16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13 17 17 C 1.53002 * 109.41659 * 178.67459 * 16 15 14 18 18 C 1.53007 * 109.47150 * 295.13077 * 17 16 15 19 19 C 1.50699 * 109.47223 * 179.97438 * 18 17 16 20 20 O 1.20824 * 119.99675 * 359.97438 * 19 18 17 21 21 O 1.34227 * 120.00020 * 179.97438 * 19 18 17 22 22 C 1.53040 * 109.60905 * 298.70899 * 16 15 14 23 23 C 1.46926 * 120.63157 * 354.78914 * 13 11 10 24 24 H 0.96998 * 119.99708 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46781 * 60.00452 * 9 7 2 26 26 H 1.08998 * 109.47255 * 300.00817 * 9 7 2 27 27 H 0.96993 * 120.00686 * 359.97438 * 10 9 7 28 28 H 1.08999 * 109.58363 * 246.19988 * 14 13 11 29 29 H 1.09002 * 109.58625 * 6.48116 * 14 13 11 30 30 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 31 31 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 32 32 H 1.08994 * 109.42367 * 58.75582 * 16 15 14 33 33 H 1.09008 * 109.47043 * 55.12644 * 17 16 15 34 34 H 1.08992 * 109.47289 * 175.12966 * 17 16 15 35 35 H 1.08998 * 109.46709 * 299.99684 * 18 17 16 36 36 H 1.09001 * 109.47144 * 59.99666 * 18 17 16 37 37 H 0.96700 * 116.99999 * 179.97438 * 21 19 18 38 38 H 1.08993 * 109.50186 * 301.42491 * 22 16 15 39 39 H 1.09004 * 109.52060 * 181.34332 * 22 16 15 40 40 H 1.09010 * 109.58451 * 353.37613 * 23 13 11 41 41 H 1.08999 * 109.58904 * 113.65827 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5621 -5.1068 -0.0929 13 7 2.6253 -5.9064 0.1003 14 6 2.1452 -7.2902 0.2162 15 6 2.8098 -8.1386 -0.8726 16 6 4.3323 -7.9875 -0.7688 17 6 5.0036 -8.8584 -1.8327 18 6 4.7187 -10.3327 -1.5391 19 6 5.3794 -11.1905 -2.5873 20 8 6.0126 -10.6754 -3.4781 21 8 5.2643 -12.5267 -2.5313 22 6 4.7194 -6.5234 -0.9899 23 6 4.0736 -5.6590 0.0975 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1566 -3.4355 -0.0009 28 1 2.4055 -7.6862 1.1978 29 1 1.0630 -7.3135 0.0879 30 1 2.5345 -9.1845 -0.7374 31 1 2.4767 -7.7980 -1.8531 32 1 4.6614 -8.3047 0.2206 33 1 4.6085 -8.6007 -2.8155 34 1 6.0797 -8.6862 -1.8172 35 1 5.1138 -10.5903 -0.5564 36 1 3.6425 -10.5049 -1.5546 37 1 5.7051 -13.0348 -3.2260 38 1 4.3686 -6.1982 -1.9693 39 1 5.8035 -6.4217 -0.9395 40 1 4.2640 -4.6062 -0.1116 41 1 4.4907 -5.9196 1.0702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851652010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:45 Heat of formation + Delta-G solvation = -139.265024 kcal Electronic energy + Delta-G solvation = -22254.353272 eV Core-core repulsion = 18747.502505 eV Total energy + Delta-G solvation = -3506.850767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65829 -39.88446 -37.78366 -36.51810 -34.55381 -34.23015 -32.38581 -31.22051 -30.80040 -27.35101 -26.27020 -23.48768 -23.36775 -22.19129 -21.16672 -20.32653 -19.11415 -18.46681 -18.01623 -16.82871 -16.53180 -15.98311 -15.69524 -15.12577 -14.82619 -14.60015 -14.23602 -13.91712 -13.83088 -13.59776 -13.21120 -13.10497 -12.79308 -12.34337 -12.13504 -11.91095 -11.90078 -11.74922 -11.43449 -11.28490 -11.01962 -10.92141 -10.89059 -10.86790 -10.59350 -10.40725 -10.25346 -9.34672 -9.29924 -8.71526 -8.36781 -7.69364 -6.13668 -4.20024 1.84608 2.67455 3.23020 3.25142 3.32702 3.36077 3.92015 4.32176 4.33198 4.49826 4.56653 4.65551 4.85144 4.86568 5.05546 5.07781 5.22326 5.22593 5.28823 5.36805 5.44181 5.56100 5.68223 5.71175 5.82472 5.88000 5.93763 6.02321 6.06585 6.14212 6.30988 6.83461 7.17796 7.51531 7.54460 7.57370 7.59991 7.88942 8.04563 8.78454 8.93397 9.35180 9.50249 10.96657 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035510 B = 0.002760 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.327491 B =10141.064220 C =10609.572892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.697 3.303 12 O -0.600 6.600 13 N -0.638 5.638 14 C 0.131 3.869 15 C -0.133 4.133 16 C -0.085 4.085 17 C -0.104 4.104 18 C -0.116 4.116 19 C 0.476 3.524 20 O -0.516 6.516 21 O -0.521 6.521 22 C -0.129 4.129 23 C 0.113 3.887 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.385 0.615 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.409 0.591 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.703 -22.113 -1.280 25.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.144 3.856 10 N -0.384 5.384 11 C 0.398 3.602 12 O -0.479 6.479 13 N -0.378 5.378 14 C 0.007 3.993 15 C -0.172 4.172 16 C -0.103 4.103 17 C -0.142 4.142 18 C -0.153 4.153 19 C 0.319 3.681 20 O -0.404 6.404 21 O -0.333 6.333 22 C -0.167 4.167 23 C -0.011 4.011 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.220 0.780 28 H 0.076 0.924 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.268 0.732 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.598 -21.705 -1.262 24.641 hybrid contribution 1.245 0.630 -0.515 1.487 sum 12.842 -21.075 -1.777 24.743 Atomic orbital electron populations 1.69994 1.06075 1.27115 1.49087 1.24949 0.94918 0.99398 0.94810 0.86363 0.79803 0.83013 0.77724 1.19670 1.20820 1.20821 1.21252 0.93238 0.90447 1.52915 0.91990 1.18984 0.87841 0.81156 0.97573 1.45883 1.10807 1.04471 1.77250 1.16068 0.84819 0.81109 0.78180 1.90850 1.14493 1.83873 1.58694 1.47289 1.05175 1.05977 1.79370 1.21307 1.00653 0.80136 0.97225 1.22148 0.94700 0.99835 1.00498 1.21198 0.95373 0.94957 0.98821 1.21512 1.01756 0.90855 1.00073 1.21505 1.02669 0.94038 0.97103 1.23709 0.77693 0.80985 0.85715 1.90741 1.39402 1.74253 1.36013 1.84551 1.72465 1.20594 1.55656 1.21955 1.00441 0.94382 0.99953 1.21539 0.80952 1.00078 0.98491 0.92540 0.95701 0.95850 0.77976 0.92396 0.88947 0.90921 0.91255 0.90689 0.90804 0.90873 0.87535 0.87264 0.73233 0.91175 0.90769 0.90068 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 10 N -0.73 -16.08 5.46 -66.41 -0.36 -16.45 16 11 C 0.70 14.81 8.29 -86.91 -0.72 14.09 16 12 O -0.60 -15.25 15.77 5.29 0.08 -15.17 16 13 N -0.64 -9.88 2.97 -178.49 -0.53 -10.41 16 14 C 0.13 1.65 6.43 -3.71 -0.02 1.63 16 15 C -0.13 -1.25 5.17 -26.45 -0.14 -1.39 16 16 C -0.08 -0.68 2.15 -90.41 -0.19 -0.87 16 17 C -0.10 -0.79 3.97 -26.73 -0.11 -0.89 16 18 C -0.12 -0.69 5.57 -27.88 -0.16 -0.85 16 19 C 0.48 3.80 8.33 36.01 0.30 4.10 16 20 O -0.52 -5.94 16.74 -18.75 -0.31 -6.26 16 21 O -0.52 -3.09 13.42 -39.25 -0.53 -3.62 16 22 C -0.13 -1.22 5.36 -26.61 -0.14 -1.37 16 23 C 0.11 1.33 6.39 -3.71 -0.02 1.31 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.75 8.14 -51.92 -0.42 0.33 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.39 7.33 5.81 -40.82 -0.24 7.09 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.39 6.99 -51.93 -0.36 1.03 16 30 H 0.07 0.51 6.52 -51.93 -0.34 0.17 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 34 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.55 6.53 -51.93 -0.34 0.21 16 37 H 0.41 0.87 9.10 45.56 0.41 1.28 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.00 5.65 -51.92 -0.29 0.70 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -35.95 336.33 -7.85 -43.80 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.34 Total: 3.20 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -1.65 Total: 9.46 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.16 Total: -52.45 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.76 Total: -25.04 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.95 -7.85 -43.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851652010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.464 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds