Wall clock time and date at job start Tue Mar 31 2020 05:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00181 * 2 1 4 4 H 1.48497 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46636 * 299.99998 * 3 2 1 6 6 H 1.48495 * 109.47132 * 59.99749 * 3 2 1 7 7 C 1.37874 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00147 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00354 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47096 * 180.02562 * 9 7 2 11 11 C 1.34782 * 119.99675 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00071 * 4.97931 * 11 10 9 13 13 N 1.34774 * 119.99915 * 184.98301 * 11 10 9 14 14 C 1.46926 * 120.63121 * 174.77166 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.33965 * 14 13 11 16 16 C 1.53354 * 109.14570 * 54.57617 * 15 14 13 17 17 C 1.53002 * 109.41659 * 178.67459 * 16 15 14 18 18 C 1.53007 * 109.47150 * 295.13077 * 17 16 15 19 19 C 1.50699 * 109.47223 * 179.97438 * 18 17 16 20 20 O 1.20824 * 119.99675 * 359.97438 * 19 18 17 21 21 O 1.34227 * 120.00020 * 179.97438 * 19 18 17 22 22 C 1.53040 * 109.60905 * 298.70899 * 16 15 14 23 23 C 1.46926 * 120.63157 * 354.78914 * 13 11 10 24 24 H 0.96998 * 119.99708 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46781 * 60.00452 * 9 7 2 26 26 H 1.08998 * 109.47255 * 300.00817 * 9 7 2 27 27 H 0.96993 * 120.00686 * 359.97438 * 10 9 7 28 28 H 1.08999 * 109.58363 * 246.19988 * 14 13 11 29 29 H 1.09002 * 109.58625 * 6.48116 * 14 13 11 30 30 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 31 31 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 32 32 H 1.08994 * 109.42367 * 58.75582 * 16 15 14 33 33 H 1.09008 * 109.47043 * 55.12644 * 17 16 15 34 34 H 1.08992 * 109.47289 * 175.12966 * 17 16 15 35 35 H 1.08998 * 109.46709 * 299.99684 * 18 17 16 36 36 H 1.09001 * 109.47144 * 59.99666 * 18 17 16 37 37 H 0.96700 * 116.99999 * 179.97438 * 21 19 18 38 38 H 1.08993 * 109.50186 * 301.42491 * 22 16 15 39 39 H 1.09004 * 109.52060 * 181.34332 * 22 16 15 40 40 H 1.09010 * 109.58451 * 353.37613 * 23 13 11 41 41 H 1.08999 * 109.58904 * 113.65827 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5621 -5.1068 -0.0929 13 7 2.6253 -5.9064 0.1003 14 6 2.1452 -7.2902 0.2162 15 6 2.8098 -8.1386 -0.8726 16 6 4.3323 -7.9875 -0.7688 17 6 5.0036 -8.8584 -1.8327 18 6 4.7187 -10.3327 -1.5391 19 6 5.3794 -11.1905 -2.5873 20 8 6.0126 -10.6754 -3.4781 21 8 5.2643 -12.5267 -2.5313 22 6 4.7194 -6.5234 -0.9899 23 6 4.0736 -5.6590 0.0975 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6246 -2.5571 0.8896 27 1 3.1566 -3.4355 -0.0009 28 1 2.4055 -7.6862 1.1978 29 1 1.0630 -7.3135 0.0879 30 1 2.5345 -9.1845 -0.7374 31 1 2.4767 -7.7980 -1.8531 32 1 4.6614 -8.3047 0.2206 33 1 4.6085 -8.6007 -2.8155 34 1 6.0797 -8.6862 -1.8172 35 1 5.1138 -10.5903 -0.5564 36 1 3.6425 -10.5049 -1.5546 37 1 5.7051 -13.0348 -3.2260 38 1 4.3686 -6.1982 -1.9693 39 1 5.8035 -6.4217 -0.9395 40 1 4.2640 -4.6062 -0.1116 41 1 4.4907 -5.9196 1.0702 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851652010.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:44 Heat of formation + Delta-G solvation = -165.800064 kcal Electronic energy + Delta-G solvation = -22255.503918 eV Core-core repulsion = 18747.502505 eV Total energy + Delta-G solvation = -3508.001413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42062 -41.11263 -38.94342 -37.11695 -36.20453 -35.60121 -34.33825 -32.09877 -31.83888 -29.19562 -27.30085 -25.00980 -24.23723 -23.65300 -22.00748 -21.13430 -20.63041 -19.49455 -18.96659 -18.04939 -17.39994 -17.28150 -17.09864 -16.60404 -16.43399 -15.51289 -15.25302 -15.06719 -14.86336 -14.75964 -14.52798 -14.17719 -13.96905 -13.82672 -13.54833 -13.14364 -12.88837 -12.76498 -12.74605 -12.51040 -12.24897 -12.12629 -12.06740 -11.78128 -11.55074 -11.46422 -11.40898 -11.19728 -10.99860 -10.81476 -10.02087 -9.32850 -8.28415 -6.45040 1.27606 1.43366 1.45219 1.58386 1.84443 2.21952 2.25111 2.39021 3.06413 3.21895 3.71363 3.84520 3.86100 4.06103 4.21725 4.27551 4.42144 4.51471 4.54308 4.60395 4.74692 4.86271 4.90641 4.95889 5.01348 5.05906 5.11854 5.19444 5.21814 5.26760 5.32737 5.49210 5.57476 5.63202 5.69596 5.80575 5.85675 6.15795 6.66776 7.04182 7.20503 7.25473 7.72338 8.84290 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.035510 B = 0.002760 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.327491 B =10141.064220 C =10609.572892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.285 3.715 10 N -0.726 5.726 11 C 0.690 3.310 12 O -0.651 6.651 13 N -0.628 5.628 14 C 0.122 3.878 15 C -0.125 4.125 16 C -0.076 4.076 17 C -0.098 4.098 18 C -0.113 4.113 19 C 0.479 3.521 20 O -0.560 6.560 21 O -0.517 6.517 22 C -0.126 4.126 23 C 0.106 3.894 24 H 0.269 0.731 25 H -0.018 1.018 26 H -0.015 1.015 27 H 0.402 0.598 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.424 0.576 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.689 -23.172 -0.311 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.591 4.591 8 H 0.100 0.900 9 C 0.162 3.838 10 N -0.382 5.382 11 C 0.391 3.609 12 O -0.534 6.534 13 N -0.366 5.366 14 C 0.000 4.000 15 C -0.164 4.164 16 C -0.094 4.094 17 C -0.135 4.135 18 C -0.150 4.150 19 C 0.324 3.676 20 O -0.452 6.452 21 O -0.331 6.331 22 C -0.164 4.164 23 C -0.016 4.016 24 H 0.078 0.922 25 H 0.000 1.000 26 H 0.003 0.997 27 H 0.240 0.760 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.152 0.848 36 H 0.141 0.859 37 H 0.286 0.714 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.662 -22.852 -0.289 27.153 hybrid contribution 0.301 0.807 -0.819 1.188 sum 14.962 -22.045 -1.108 26.666 Atomic orbital electron populations 1.70157 1.08292 1.28509 1.49981 1.26090 0.95815 1.03924 0.93854 0.85078 0.79058 0.77150 0.77707 1.17587 1.20487 1.20306 1.21601 0.94212 0.90432 1.52842 0.89956 1.18401 0.88144 0.83503 0.93769 1.45492 1.10815 1.03982 1.77883 1.16308 0.84885 0.81792 0.77915 1.90807 1.17129 1.84699 1.60808 1.47372 1.06250 1.05642 1.77323 1.21601 0.99322 0.78953 1.00121 1.22115 0.95642 1.00785 0.97812 1.21155 0.93922 0.93927 1.00396 1.21378 1.01438 0.91994 0.98717 1.21568 1.03402 0.92400 0.97672 1.24090 0.76740 0.81505 0.85284 1.90733 1.41540 1.75041 1.37845 1.84519 1.72338 1.19892 1.56306 1.21949 1.01661 0.94979 0.97789 1.21877 0.78391 1.00386 1.00976 0.92228 0.99979 0.99719 0.76033 0.89355 0.92084 0.87635 0.93660 0.87900 0.93001 0.90900 0.84760 0.85923 0.71423 0.93362 0.88186 0.90906 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.29 21.45 0.28 -56.75 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.99 42.77 29.54 68.60 2.03 44.80 16 4 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.79 9.28 25.60 0.24 -30.56 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.29 16.35 5.43 85.63 0.47 16.82 16 10 N -0.73 -33.01 5.46 -482.29 -2.63 -35.64 16 11 C 0.69 30.38 8.29 179.05 1.49 31.86 16 12 O -0.65 -35.12 15.77 -3.97 -0.06 -35.18 16 13 N -0.63 -19.11 2.97 -836.89 -2.49 -21.59 16 14 C 0.12 2.95 6.43 86.36 0.56 3.51 16 15 C -0.13 -2.09 5.17 30.78 0.16 -1.93 16 16 C -0.08 -0.95 2.15 -10.66 -0.02 -0.97 16 17 C -0.10 -1.21 3.97 30.60 0.12 -1.09 16 18 C -0.11 -0.97 5.57 29.85 0.17 -0.80 16 19 C 0.48 6.62 8.33 71.24 0.59 7.21 16 20 O -0.56 -12.38 16.74 21.97 0.37 -12.01 16 21 O -0.52 -4.87 13.42 -51.39 -0.69 -5.56 16 22 C -0.13 -2.07 5.36 30.67 0.16 -1.90 16 23 C 0.11 2.25 6.39 86.36 0.55 2.80 16 24 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 25 H -0.02 -1.15 8.14 -2.38 -0.02 -1.17 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.40 15.30 5.81 -92.71 -0.54 14.76 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.88 6.99 -2.39 -0.02 1.86 16 30 H 0.11 1.09 6.52 -2.39 -0.02 1.08 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 0.89 8.10 -2.38 -0.02 0.87 16 34 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 35 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.12 0.75 6.53 -2.39 -0.02 0.74 16 37 H 0.42 0.97 9.10 -74.06 -0.67 0.29 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.07 1.67 5.65 -2.38 -0.01 1.66 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -83.38 336.33 1.58 -81.80 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -0.16 Total: 14.58 kcal Atomic # 6 Polarization: 20.62 SS G_CDS: 4.94 Total: 25.56 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -4.84 Total: -113.99 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.38 Total: -52.75 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -83.38 1.58 -81.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851652010.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.005 kcal (2) G-P(sol) polarization free energy of solvation -83.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds