Wall clock time and date at job start Tue Mar 31 2020 06:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.46730 * 2 1 4 4 C 1.36934 * 119.99563 * 275.31578 * 3 2 1 5 5 H 1.07999 * 120.00491 * 38.91156 * 4 3 2 6 6 C 1.38820 * 119.99474 * 218.90277 * 4 3 2 7 7 N 1.31610 * 120.00152 * 19.50705 * 6 4 3 8 8 Si 1.86805 * 119.99768 * 199.49998 * 6 4 3 9 9 H 1.48498 * 109.47080 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46786 * 120.00165 * 8 6 4 11 11 H 1.48491 * 109.47187 * 240.00320 * 8 6 4 12 12 C 1.46494 * 119.99844 * 95.31630 * 3 2 1 13 13 C 1.50697 * 109.47374 * 270.00015 * 12 3 2 14 14 C 1.38314 * 119.93714 * 105.00069 * 13 12 3 15 15 C 1.38228 * 120.07674 * 179.97438 * 14 13 12 16 16 F 1.35100 * 120.03344 * 180.02562 * 15 14 13 17 17 C 1.39116 * 119.93609 * 359.97438 * 15 14 13 18 18 N 1.39841 * 120.06385 * 179.97438 * 17 15 14 19 19 C 1.46905 * 110.99662 * 120.00618 * 18 17 15 20 20 C 1.46900 * 110.99974 * 243.95287 * 18 17 15 21 21 C 1.38773 * 119.86812 * 0.02562 * 17 15 14 22 22 C 1.38393 * 119.92265 * 359.74478 * 21 17 15 23 23 F 1.35098 * 119.96407 * 180.25601 * 22 21 17 24 24 H 1.08999 * 109.47402 * 60.00484 * 1 2 3 25 25 H 1.09006 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47221 * 299.99419 * 1 2 3 27 27 H 1.09000 * 109.47221 * 240.00581 * 2 1 3 28 28 H 1.08999 * 109.47402 * 119.99516 * 2 1 3 29 29 H 0.97001 * 120.00665 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47220 * 29.99914 * 12 3 2 31 31 H 1.09001 * 109.46964 * 149.99917 * 12 3 2 32 32 H 1.08004 * 119.96120 * 359.95666 * 14 13 12 33 33 H 1.08996 * 109.47400 * 59.99793 * 19 18 17 34 34 H 1.09003 * 109.46819 * 179.97438 * 19 18 17 35 35 H 1.09006 * 109.46631 * 299.99725 * 19 18 17 36 36 H 1.08998 * 109.46812 * 60.00381 * 20 18 17 37 37 H 1.08998 * 109.47265 * 180.02562 * 20 18 17 38 38 H 1.08996 * 109.47387 * 300.00759 * 20 18 17 39 39 H 1.07998 * 120.03489 * 179.97438 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1428 2.0634 -1.1808 5 1 1.3986 1.9443 -1.9544 6 6 3.2257 2.9081 -1.3835 7 7 4.3085 2.7782 -0.6468 8 14 3.1459 4.2289 -2.7020 9 1 1.8290 4.1672 -3.3855 10 1 3.3158 5.5646 -2.0755 11 1 4.2292 4.0055 -3.6928 12 6 2.3732 2.0327 1.2632 13 6 1.1611 2.7276 1.8281 14 6 0.4903 2.1784 2.9058 15 6 -0.6214 2.8135 3.4266 16 9 -1.2757 2.2766 4.4796 17 6 -1.0654 4.0068 2.8660 18 7 -2.1902 4.6514 3.3903 19 6 -1.8509 5.9998 3.8644 20 6 -3.2776 4.6985 2.4038 21 6 -0.3905 4.5557 1.7847 22 6 0.7248 3.9174 1.2709 23 9 1.3855 4.4537 0.2216 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 5.0653 3.3681 -0.7886 30 1 2.7256 1.2833 1.9720 31 1 3.1616 2.7642 1.0859 32 1 0.8355 1.2520 3.3408 33 1 -1.4650 6.5907 3.0337 34 1 -2.7436 6.4788 4.2667 35 1 -1.0924 5.9306 4.6443 36 1 -3.5565 3.6832 2.1218 37 1 -4.1398 5.2052 2.8373 38 1 -2.9434 5.2421 1.5202 39 1 -0.7331 5.4817 1.3472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862231045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:32 Heat of formation + Delta-G solvation = -31.099406 kcal Electronic energy + Delta-G solvation = -23620.841538 eV Core-core repulsion = 20007.593669 eV Total energy + Delta-G solvation = -3613.247870 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.40864 -47.96975 -39.32904 -36.94627 -35.32662 -31.89889 -30.82784 -29.73065 -28.50897 -27.64232 -26.04844 -24.24297 -22.91834 -22.35074 -20.85433 -20.10281 -17.31728 -16.87927 -16.75460 -16.42864 -15.55851 -15.07182 -14.75491 -14.61243 -14.55713 -14.14875 -13.87465 -13.79717 -13.69305 -13.33568 -12.84187 -12.46871 -12.43908 -12.35707 -11.87044 -11.76933 -11.76068 -11.39849 -11.20511 -11.06576 -10.75987 -10.58061 -10.49961 -10.13580 -10.03227 -9.82131 -8.62010 -8.57823 -8.47929 -7.83953 -6.65191 -5.86063 -3.43608 1.39207 1.49055 3.34784 3.43656 3.46114 3.77588 3.80766 4.46589 4.61285 4.86218 5.00505 5.15638 5.26509 5.29019 5.40252 5.41686 5.50240 5.52265 5.65714 5.76667 5.80398 5.86907 6.01405 6.25735 6.29371 6.31380 6.36599 6.53392 6.60314 6.64882 6.80056 6.87393 6.92680 7.02219 7.12745 7.43524 7.52116 7.79038 8.46286 9.11093 9.73256 10.30445 11.14942 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.006604 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.583430 B = 4238.689004 C = 5012.804387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.573 5.573 4 C -0.256 4.256 5 H 0.058 0.942 6 C 0.027 3.973 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.291 1.291 12 C 0.173 3.827 13 C -0.082 4.082 14 C -0.130 4.130 15 C 0.104 3.896 16 F -0.136 7.136 17 C 0.050 3.950 18 N -0.502 5.502 19 C 0.028 3.972 20 C 0.028 3.972 21 C -0.168 4.168 22 C 0.123 3.877 23 F -0.114 7.114 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.044 0.956 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.256 0.744 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.032 0.968 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 2.772 7.609 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 N -0.291 5.291 4 C -0.385 4.385 5 H 0.076 0.924 6 C -0.174 4.174 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.218 1.218 12 C 0.047 3.953 13 C -0.086 4.086 14 C -0.151 4.151 15 C 0.084 3.916 16 F -0.114 7.114 17 C -0.046 4.046 18 N -0.222 5.222 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.189 4.189 22 C 0.102 3.898 23 F -0.092 7.092 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.870 2.559 7.963 12.938 hybrid contribution 0.035 1.344 -1.361 1.913 sum -9.836 3.903 6.603 12.473 Atomic orbital electron populations 1.22340 0.99991 0.99075 1.01290 1.20891 0.91676 0.86754 0.99045 1.43724 1.75678 1.08023 1.01716 1.18957 1.03550 1.22366 0.93614 0.92385 1.25117 0.94064 1.00554 0.97656 1.69938 1.03188 1.37874 1.41514 0.86391 0.77594 0.82419 0.81316 1.20037 1.21116 1.21835 1.20077 0.91646 0.97037 0.86541 1.21392 1.01312 0.92843 0.93085 1.20854 0.95033 1.01237 0.97962 1.17446 0.93424 0.93080 0.87678 1.91446 1.80315 1.85362 1.54283 1.18231 0.94851 0.95322 0.96147 1.59595 1.06053 1.19020 1.37551 1.22462 1.01657 0.87844 0.99956 1.22457 0.93435 1.02566 0.93400 1.21347 0.96951 1.01961 0.98659 1.17371 0.92053 0.93128 0.87238 1.91580 1.79132 1.84970 1.53516 0.93332 0.94426 0.93725 0.93379 0.94579 0.93409 0.93851 0.87257 0.84455 0.94974 0.91013 0.91088 0.91077 0.91014 0.94950 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.21 37.16 0.38 -2.69 16 2 C 0.14 2.92 6.44 -4.04 -0.03 2.89 16 3 N -0.57 -13.63 2.41 -174.61 -0.42 -14.05 16 4 C -0.26 -6.74 8.30 -15.06 -0.13 -6.87 16 5 H 0.06 1.58 7.90 -52.49 -0.41 1.16 16 6 C 0.03 0.73 4.01 -17.43 -0.07 0.66 16 7 N -0.88 -24.57 11.45 55.49 0.64 -23.93 16 8 Si 0.89 21.69 28.93 -169.99 -4.92 16.77 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 C 0.17 3.88 5.18 -5.20 -0.03 3.85 16 13 C -0.08 -1.62 5.27 -104.52 -0.55 -2.17 16 14 C -0.13 -2.25 8.99 -39.56 -0.36 -2.60 16 15 C 0.10 1.76 7.31 -39.26 -0.29 1.47 16 16 F -0.14 -2.27 17.08 2.25 0.04 -2.23 16 17 C 0.05 0.81 4.74 -83.68 -0.40 0.41 16 18 N -0.50 -7.01 4.82 -186.78 -0.90 -7.91 16 19 C 0.03 0.32 9.35 60.07 0.56 0.88 16 20 C 0.03 0.34 9.38 60.06 0.56 0.90 16 21 C -0.17 -2.87 8.55 -39.33 -0.34 -3.20 16 22 C 0.12 2.48 7.20 -39.45 -0.28 2.20 16 23 F -0.11 -2.63 13.83 2.25 0.03 -2.60 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.82 7.28 -51.93 -0.38 0.45 16 27 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 28 H 0.04 0.68 7.83 -51.93 -0.41 0.27 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.04 0.89 7.66 -51.93 -0.40 0.50 16 31 H 0.11 2.80 5.47 -51.93 -0.28 2.52 16 32 H 0.14 2.12 8.00 -52.48 -0.42 1.70 16 33 H 0.03 0.36 7.13 -51.93 -0.37 -0.01 16 34 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 38 H 0.03 0.38 7.34 -51.93 -0.38 0.00 16 39 H 0.13 1.99 7.02 -52.49 -0.37 1.62 16 LS Contribution 325.60 15.07 4.91 4.91 Total: -1.00 -28.26 325.60 -7.09 -35.35 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.51 Total: -2.04 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.95 Total: -4.27 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: -0.69 Total: -45.89 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.07 Total: -4.83 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.92 Total: 16.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.26 -7.09 -35.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862231045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.251 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds