Wall clock time and date at job start Tue Mar 31 2020 06:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.46730 * 2 1 4 4 C 1.36934 * 119.99563 * 275.31578 * 3 2 1 5 5 H 1.07999 * 120.00491 * 38.91156 * 4 3 2 6 6 C 1.38820 * 119.99474 * 218.90277 * 4 3 2 7 7 N 1.31610 * 120.00152 * 19.50705 * 6 4 3 8 8 Si 1.86805 * 119.99768 * 199.49998 * 6 4 3 9 9 H 1.48498 * 109.47080 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46786 * 120.00165 * 8 6 4 11 11 H 1.48491 * 109.47187 * 240.00320 * 8 6 4 12 12 C 1.46494 * 119.99844 * 95.31630 * 3 2 1 13 13 C 1.50697 * 109.47374 * 270.00015 * 12 3 2 14 14 C 1.38314 * 119.93714 * 105.00069 * 13 12 3 15 15 C 1.38228 * 120.07674 * 179.97438 * 14 13 12 16 16 F 1.35100 * 120.03344 * 180.02562 * 15 14 13 17 17 C 1.39116 * 119.93609 * 359.97438 * 15 14 13 18 18 N 1.39841 * 120.06385 * 179.97438 * 17 15 14 19 19 C 1.46905 * 110.99662 * 120.00618 * 18 17 15 20 20 C 1.46900 * 110.99974 * 243.95287 * 18 17 15 21 21 C 1.38773 * 119.86812 * 0.02562 * 17 15 14 22 22 C 1.38393 * 119.92265 * 359.74478 * 21 17 15 23 23 F 1.35098 * 119.96407 * 180.25601 * 22 21 17 24 24 H 1.08999 * 109.47402 * 60.00484 * 1 2 3 25 25 H 1.09006 * 109.46915 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47221 * 299.99419 * 1 2 3 27 27 H 1.09000 * 109.47221 * 240.00581 * 2 1 3 28 28 H 1.08999 * 109.47402 * 119.99516 * 2 1 3 29 29 H 0.97001 * 120.00665 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.47220 * 29.99914 * 12 3 2 31 31 H 1.09001 * 109.46964 * 149.99917 * 12 3 2 32 32 H 1.08004 * 119.96120 * 359.95666 * 14 13 12 33 33 H 1.08996 * 109.47400 * 59.99793 * 19 18 17 34 34 H 1.09003 * 109.46819 * 179.97438 * 19 18 17 35 35 H 1.09006 * 109.46631 * 299.99725 * 19 18 17 36 36 H 1.08998 * 109.46812 * 60.00381 * 20 18 17 37 37 H 1.08998 * 109.47265 * 180.02562 * 20 18 17 38 38 H 1.08996 * 109.47387 * 300.00759 * 20 18 17 39 39 H 1.07998 * 120.03489 * 179.97438 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1428 2.0634 -1.1808 5 1 1.3986 1.9443 -1.9544 6 6 3.2257 2.9081 -1.3835 7 7 4.3085 2.7782 -0.6468 8 14 3.1459 4.2289 -2.7020 9 1 1.8290 4.1672 -3.3855 10 1 3.3158 5.5646 -2.0755 11 1 4.2292 4.0055 -3.6928 12 6 2.3732 2.0327 1.2632 13 6 1.1611 2.7276 1.8281 14 6 0.4903 2.1784 2.9058 15 6 -0.6214 2.8135 3.4266 16 9 -1.2757 2.2766 4.4796 17 6 -1.0654 4.0068 2.8660 18 7 -2.1902 4.6514 3.3903 19 6 -1.8509 5.9998 3.8644 20 6 -3.2776 4.6985 2.4038 21 6 -0.3905 4.5557 1.7847 22 6 0.7248 3.9174 1.2709 23 9 1.3855 4.4537 0.2216 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 5.0653 3.3681 -0.7886 30 1 2.7256 1.2833 1.9720 31 1 3.1616 2.7642 1.0859 32 1 0.8355 1.2520 3.3408 33 1 -1.4650 6.5907 3.0337 34 1 -2.7436 6.4788 4.2667 35 1 -1.0924 5.9306 4.6443 36 1 -3.5565 3.6832 2.1218 37 1 -4.1398 5.2052 2.8373 38 1 -2.9434 5.2421 1.5202 39 1 -0.7331 5.4817 1.3472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862231045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:31 Heat of formation + Delta-G solvation = -46.120155 kcal Electronic energy + Delta-G solvation = -23621.492887 eV Core-core repulsion = 20007.593669 eV Total energy + Delta-G solvation = -3613.899218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.75737 -49.61674 -40.63673 -38.41170 -36.86582 -33.80204 -32.29202 -31.18236 -30.11815 -28.55259 -27.64171 -25.85660 -24.39837 -23.69601 -22.36307 -21.71254 -18.89541 -18.32374 -18.28300 -17.97550 -16.92274 -16.79090 -16.22465 -16.18513 -15.68899 -15.60602 -15.48326 -15.31619 -15.07512 -14.89008 -14.36959 -14.13954 -13.54723 -13.37773 -13.32500 -13.24169 -13.11511 -12.81766 -12.68601 -12.66141 -12.63168 -12.26026 -12.10427 -11.93562 -11.80000 -11.49717 -10.51918 -9.93311 -9.67883 -9.30652 -8.57160 -7.84637 -5.46276 0.01458 0.05919 1.39506 1.44763 1.51187 2.34586 2.51803 2.69503 3.21804 3.31395 3.45241 3.65626 3.81181 3.98830 4.13959 4.20786 4.36270 4.43885 4.48851 4.58466 4.61918 4.67563 4.76046 4.86813 4.92424 4.94014 4.97169 5.00330 5.08443 5.22299 5.29001 5.36852 5.54850 5.60271 5.70417 5.74048 5.82576 6.20050 6.48039 7.17305 7.83896 8.36257 9.12415 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.006604 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.583430 B = 4238.689004 C = 5012.804387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 N -0.588 5.588 4 C -0.254 4.254 5 H 0.044 0.956 6 C -0.008 4.008 7 N -0.911 5.911 8 Si 0.934 3.066 9 H -0.273 1.273 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.179 3.821 13 C -0.094 4.094 14 C -0.117 4.117 15 C 0.102 3.898 16 F -0.131 7.131 17 C 0.067 3.933 18 N -0.512 5.512 19 C 0.025 3.975 20 C 0.026 3.974 21 C -0.159 4.159 22 C 0.096 3.904 23 F -0.138 7.138 24 H 0.029 0.971 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.054 0.946 29 H 0.252 0.748 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.157 0.843 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.033 0.967 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.080 2.907 8.932 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.012 3.988 3 N -0.308 5.308 4 C -0.384 4.384 5 H 0.062 0.938 6 C -0.206 4.206 7 N -0.555 5.555 8 Si 0.763 3.237 9 H -0.198 1.198 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.053 3.947 13 C -0.098 4.098 14 C -0.137 4.137 15 C 0.082 3.918 16 F -0.110 7.110 17 C -0.029 4.029 18 N -0.234 5.234 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.180 4.180 22 C 0.075 3.925 23 F -0.117 7.117 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.175 0.825 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.118 0.882 38 H 0.051 0.949 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.099 2.693 9.302 15.497 hybrid contribution 0.579 1.297 -1.631 2.163 sum -11.520 3.990 7.672 14.404 Atomic orbital electron populations 1.22153 0.98026 1.00718 1.00243 1.21017 0.93117 0.85271 0.99364 1.43887 1.76152 1.09333 1.01474 1.18945 1.02718 1.22354 0.94363 0.93794 1.25520 0.94006 1.01965 0.99143 1.70024 1.03660 1.38720 1.43073 0.85751 0.77479 0.80662 0.79818 1.19750 1.21614 1.21742 1.19834 0.91945 0.96584 0.86383 1.21069 1.00809 0.93377 0.94577 1.20917 0.94558 1.01538 0.96720 1.17487 0.93311 0.93290 0.87725 1.91461 1.80161 1.85325 1.54045 1.18407 0.94842 0.94748 0.94872 1.59739 1.05362 1.20427 1.37842 1.22568 1.02999 0.86597 0.99952 1.22547 0.93580 1.02610 0.93265 1.21439 0.95768 1.02239 0.98572 1.17747 0.93337 0.94053 0.87379 1.91510 1.79908 1.85390 1.54874 0.95192 0.91359 0.93833 0.94545 0.92740 0.93858 0.92660 0.90704 0.82519 0.94717 0.88333 0.91445 0.91778 0.88240 0.94853 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 10.21 71.98 0.73 -4.59 16 2 C 0.14 5.53 6.44 86.38 0.56 6.09 16 3 N -0.59 -28.20 2.41 -706.33 -1.70 -29.90 16 4 C -0.25 -13.64 8.30 84.04 0.70 -12.94 16 5 H 0.04 2.45 7.90 -2.91 -0.02 2.43 16 6 C -0.01 -0.44 4.01 84.87 0.34 -0.10 16 7 N -0.91 -52.11 11.45 21.65 0.25 -51.86 16 8 Si 0.93 45.39 28.93 68.60 1.98 47.38 16 9 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 10 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 12 C 0.18 8.06 5.18 85.63 0.44 8.50 16 13 C -0.09 -3.68 5.27 -19.80 -0.10 -3.79 16 14 C -0.12 -3.82 8.99 22.29 0.20 -3.62 16 15 C 0.10 3.20 7.31 22.48 0.16 3.37 16 16 F -0.13 -4.02 17.08 44.97 0.77 -3.25 16 17 C 0.07 2.00 4.74 38.20 0.18 2.18 16 18 N -0.51 -12.68 4.82 -744.84 -3.59 -16.27 16 19 C 0.03 0.49 9.35 127.69 1.19 1.69 16 20 C 0.03 0.54 9.38 127.69 1.20 1.73 16 21 C -0.16 -5.19 8.55 22.43 0.19 -5.00 16 22 C 0.10 3.84 7.20 22.36 0.16 4.00 16 23 F -0.14 -6.52 13.83 44.97 0.62 -5.90 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 26 H 0.04 1.52 7.28 -2.39 -0.02 1.50 16 27 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 28 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 29 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 30 H 0.06 2.27 7.66 -2.38 -0.02 2.25 16 31 H 0.08 3.96 5.47 -2.39 -0.01 3.95 16 32 H 0.16 4.43 8.00 -2.91 -0.02 4.40 16 33 H 0.03 0.67 7.13 -2.39 -0.02 0.65 16 34 H 0.10 1.43 8.12 -2.39 -0.02 1.41 16 35 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.50 8.12 -2.39 -0.02 1.48 16 38 H 0.03 0.68 7.34 -2.39 -0.02 0.66 16 39 H 0.15 4.20 7.02 -2.91 -0.02 4.18 16 Total: -1.00 -61.15 325.60 5.33 -55.81 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.05 Total: 6.49 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.96 Total: -2.49 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -5.05 Total: -98.04 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 1.39 Total: -9.15 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.98 Total: 47.38 kcal Total: -61.15 5.33 -55.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862231045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.694 kcal (2) G-P(sol) polarization free energy of solvation -61.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds