Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 C 1.52995 * 109.46980 * 239.99995 * 2 1 3 5 5 S 1.81400 * 109.46837 * 120.00181 * 2 1 3 6 6 C 1.81397 * 103.00143 * 59.99738 * 5 2 1 7 7 C 1.52996 * 109.47095 * 179.97438 * 6 5 2 8 8 N 1.46494 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.35317 * 125.87155 * 125.32590 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.11507 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.09000 * 109.47552 * 300.00361 * 1 2 3 24 24 H 1.09002 * 109.46883 * 60.00189 * 1 2 3 25 25 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47007 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47442 * 300.00087 * 3 2 1 28 28 H 1.09001 * 109.47097 * 60.00224 * 3 2 1 29 29 H 1.08999 * 109.47598 * 299.99904 * 4 2 1 30 30 H 1.09002 * 109.47462 * 60.00171 * 4 2 1 31 31 H 1.09002 * 109.46870 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47171 * 60.00224 * 6 5 2 33 33 H 1.08997 * 109.47445 * 300.00340 * 6 5 2 34 34 H 1.08998 * 109.47402 * 60.00407 * 7 6 5 35 35 H 1.09000 * 109.47186 * 300.00002 * 7 6 5 36 36 H 1.08002 * 126.91295 * 359.96910 * 9 8 7 37 37 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 38 38 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 39 39 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 40 40 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 2.1346 -0.8552 1.4811 6 6 1.4374 -2.5204 1.3041 7 6 1.8633 -3.3809 2.4952 8 7 1.3007 -4.7259 2.3520 9 6 2.0000 -5.8842 2.3724 10 6 1.0934 -6.8751 2.2045 11 6 1.3740 -8.3548 2.1519 12 7 1.1888 -8.9345 3.4844 13 6 1.3840 -10.2757 3.6808 14 1 1.6789 -10.9051 2.8542 15 6 1.2029 -10.8261 4.9422 16 7 0.8430 -10.0589 5.9494 17 14 1.4699 -12.6553 5.2102 18 1 2.8874 -12.8999 5.5794 19 1 0.5846 -13.1298 6.3040 20 1 1.1500 -13.3906 3.9603 21 7 -0.1016 -6.2829 2.0999 22 7 0.0554 -5.0094 2.1912 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 1.8031 -2.9713 0.3814 33 1 0.3497 -2.4574 1.2714 34 1 1.4980 -2.9304 3.4181 35 1 2.9510 -3.4440 2.5274 36 1 3.0672 -5.9956 2.4955 37 1 2.4006 -8.5185 1.8239 38 1 0.6884 -8.8299 1.4503 39 1 0.9236 -8.3693 4.2268 40 1 0.7169 -10.4435 6.8309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881323062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = 99.514885 kcal Electronic energy + Delta-G solvation = -19391.334443 eV Core-core repulsion = 16369.883572 eV Total energy + Delta-G solvation = -3021.450871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.95343 -36.77471 -35.77328 -34.52662 -31.85605 -30.99702 -29.80314 -27.88905 -27.86487 -25.78308 -24.81908 -22.79729 -21.61067 -21.07196 -20.34900 -17.53900 -17.10601 -16.72695 -16.16314 -15.15688 -15.11774 -14.75518 -14.70689 -14.59516 -14.40619 -13.69655 -13.31306 -13.02467 -12.97235 -12.85151 -12.61406 -12.32164 -12.11519 -11.97147 -11.73917 -11.58449 -11.42667 -11.23447 -10.87434 -10.79035 -10.44323 -10.22363 -10.07983 -9.88596 -9.70433 -8.86999 -8.82994 -8.12108 -6.89758 -5.71901 -3.01633 1.00400 1.84023 1.99250 2.62063 2.91786 3.47147 3.52129 3.54429 4.07657 4.19501 4.20788 4.28723 4.55925 4.63552 4.71079 4.78784 4.98641 5.05354 5.07254 5.22326 5.24585 5.29742 5.30469 5.31211 5.34886 5.49207 5.56665 5.65151 5.68840 5.72426 5.85802 6.19521 6.41892 6.67088 6.74553 6.80189 7.72915 8.45363 8.83987 9.57020 10.12873 10.48788 11.50905 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.052220 B = 0.002514 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.068379 B =11136.303510 C =11219.418260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 C -0.128 4.128 4 C -0.146 4.146 5 S -0.234 6.234 6 C -0.106 4.106 7 C 0.138 3.862 8 N -0.300 5.300 9 C -0.041 4.041 10 C -0.005 4.005 11 C 0.233 3.767 12 N -0.726 5.726 13 C -0.239 4.239 14 H 0.073 0.927 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 N -0.252 5.252 22 N -0.097 5.097 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.190 0.810 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 24.532 -13.532 28.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.187 4.187 4 C -0.205 4.205 5 S -0.007 6.007 6 C -0.255 4.255 7 C 0.015 3.985 8 N -0.094 5.094 9 C -0.191 4.191 10 C -0.143 4.143 11 C 0.104 3.896 12 N -0.371 5.371 13 C -0.370 4.370 14 H 0.091 0.909 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.741 3.259 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 N -0.120 5.120 22 N -0.076 5.076 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.207 0.793 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.270 25.339 -12.868 28.738 hybrid contribution 0.430 -1.585 -0.280 1.666 sum 4.700 23.754 -13.148 27.554 Atomic orbital electron populations 1.22168 0.92405 1.02880 1.03154 1.22702 0.98591 0.98319 0.94424 1.21667 1.01841 0.92236 1.02926 1.22158 1.02154 1.00204 0.95991 1.86717 1.70307 1.09369 1.34298 1.23655 1.05431 0.95019 1.01392 1.21594 1.00075 0.77595 0.99190 1.47226 1.06483 1.07565 1.48163 1.23451 1.00953 0.84664 1.10077 1.22489 0.88688 0.98642 1.04516 1.18947 0.98195 0.82050 0.90437 1.42318 1.83398 1.06868 1.04504 1.19233 1.38956 0.84482 0.94374 0.90877 1.24771 1.02355 0.98007 0.95871 1.69687 1.53668 1.34317 1.00389 0.86147 0.77397 0.84986 0.77396 1.21735 1.21800 1.20670 1.75100 1.23348 0.97636 1.15892 1.78225 0.98321 1.11168 1.19879 0.91123 0.91481 0.92161 0.91566 0.90924 0.91514 0.92363 0.91440 0.91214 0.89130 0.88018 0.87605 0.86948 0.79326 0.94455 0.94341 0.78098 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.32 37.16 0.31 -0.63 16 2 C -0.03 -0.20 0.95 -90.62 -0.09 -0.28 16 3 C -0.13 -0.68 8.48 37.16 0.32 -0.37 16 4 C -0.15 -0.88 8.32 37.16 0.31 -0.57 16 5 S -0.23 -1.90 20.65 -107.50 -2.22 -4.12 16 6 C -0.11 -0.93 5.18 37.16 0.19 -0.73 16 7 C 0.14 1.33 6.46 -4.05 -0.03 1.30 16 8 N -0.30 -4.26 3.44 -61.27 -0.21 -4.47 16 9 C -0.04 -0.62 11.50 -17.04 -0.20 -0.82 16 10 C -0.01 -0.11 6.61 -82.78 -0.55 -0.65 16 11 C 0.23 4.96 6.82 -5.19 -0.04 4.93 16 12 N -0.73 -19.28 5.59 -61.09 -0.34 -19.62 16 13 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 14 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -29.05 13.06 55.49 0.72 -28.33 16 17 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 N -0.25 -5.21 12.41 33.29 0.41 -4.80 16 22 N -0.10 -1.72 12.92 60.35 0.78 -0.94 16 23 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.44 6.68 -51.93 -0.35 0.09 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.39 6.68 -51.93 -0.35 0.05 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.79 7.00 -51.92 -0.36 0.43 16 33 H 0.10 0.99 6.97 -51.93 -0.36 0.63 16 34 H 0.11 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.11 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.39 11.05 7.66 -40.82 -0.31 10.74 16 40 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 345.75 15.07 5.21 5.21 Total: -1.00 -33.82 345.75 -7.03 -40.85 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.35 Total: 3.84 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.01 Total: -5.33 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 1.36 Total: -58.15 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.22 Total: -4.12 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.82 -7.03 -40.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881323062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.366 kcal (2) G-P(sol) polarization free energy of solvation -33.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds