Wall clock time and date at job start Tue Mar 31 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 C 1.52995 * 109.46980 * 239.99995 * 2 1 3 5 5 S 1.81400 * 109.46837 * 120.00181 * 2 1 3 6 6 C 1.81397 * 103.00143 * 59.99738 * 5 2 1 7 7 C 1.52996 * 109.47095 * 179.97438 * 6 5 2 8 8 N 1.46494 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.35317 * 125.87155 * 125.32590 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.11507 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.09000 * 109.47552 * 300.00361 * 1 2 3 24 24 H 1.09002 * 109.46883 * 60.00189 * 1 2 3 25 25 H 1.09004 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47007 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47442 * 300.00087 * 3 2 1 28 28 H 1.09001 * 109.47097 * 60.00224 * 3 2 1 29 29 H 1.08999 * 109.47598 * 299.99904 * 4 2 1 30 30 H 1.09002 * 109.47462 * 60.00171 * 4 2 1 31 31 H 1.09002 * 109.46870 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47171 * 60.00224 * 6 5 2 33 33 H 1.08997 * 109.47445 * 300.00340 * 6 5 2 34 34 H 1.08998 * 109.47402 * 60.00407 * 7 6 5 35 35 H 1.09000 * 109.47186 * 300.00002 * 7 6 5 36 36 H 1.08002 * 126.91295 * 359.96910 * 9 8 7 37 37 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 38 38 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 39 39 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 40 40 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 2.1346 -0.8552 1.4811 6 6 1.4374 -2.5204 1.3041 7 6 1.8633 -3.3809 2.4952 8 7 1.3007 -4.7259 2.3520 9 6 2.0000 -5.8842 2.3724 10 6 1.0934 -6.8751 2.2045 11 6 1.3740 -8.3548 2.1519 12 7 1.1888 -8.9345 3.4844 13 6 1.3840 -10.2757 3.6808 14 1 1.6789 -10.9051 2.8542 15 6 1.2029 -10.8261 4.9422 16 7 0.8430 -10.0589 5.9494 17 14 1.4699 -12.6553 5.2102 18 1 2.8874 -12.8999 5.5794 19 1 0.5846 -13.1298 6.3040 20 1 1.1500 -13.3906 3.9603 21 7 -0.1016 -6.2829 2.0999 22 7 0.0554 -5.0094 2.1912 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2490 32 1 1.8031 -2.9713 0.3814 33 1 0.3497 -2.4574 1.2714 34 1 1.4980 -2.9304 3.4181 35 1 2.9510 -3.4440 2.5274 36 1 3.0672 -5.9956 2.4955 37 1 2.4006 -8.5185 1.8239 38 1 0.6884 -8.8299 1.4503 39 1 0.9236 -8.3693 4.2268 40 1 0.7169 -10.4435 6.8309 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881323062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:39 Heat of formation + Delta-G solvation = 77.597539 kcal Electronic energy + Delta-G solvation = -19392.284850 eV Core-core repulsion = 16369.883572 eV Total energy + Delta-G solvation = -3022.401279 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.25577 -37.28825 -37.10780 -36.16756 -33.70262 -32.05898 -31.50866 -28.37019 -28.36087 -27.59805 -25.76608 -24.75904 -22.83033 -21.95525 -21.36620 -19.33708 -18.43575 -17.66529 -17.02914 -16.59513 -16.09404 -16.00424 -15.67644 -15.34251 -15.21359 -15.19361 -15.06133 -14.33830 -13.88394 -13.77679 -13.44852 -13.36575 -13.02185 -12.88086 -12.76527 -12.63538 -12.47745 -12.42537 -12.08974 -12.06606 -11.96892 -11.86968 -11.79316 -11.10174 -10.95450 -10.80531 -10.22799 -9.02010 -8.75913 -7.93129 -5.23734 0.30951 0.62249 1.36403 1.43944 1.51444 1.52842 1.61647 1.64276 2.59939 3.24510 3.38555 3.47438 3.57462 3.71302 3.72348 3.94943 4.06351 4.08451 4.20271 4.21047 4.25933 4.51142 4.56691 4.63257 4.67461 4.76027 4.80552 4.85384 4.86932 4.87506 5.11092 5.13506 5.17606 5.23155 5.25393 5.51272 5.61653 6.26609 7.33216 7.49171 8.04555 8.30403 9.30949 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.052220 B = 0.002514 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.068379 B =11136.303510 C =11219.418260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C -0.126 4.126 4 C -0.144 4.144 5 S -0.245 6.245 6 C -0.097 4.097 7 C 0.130 3.870 8 N -0.284 5.284 9 C -0.016 4.016 10 C -0.038 4.038 11 C 0.236 3.764 12 N -0.740 5.740 13 C -0.243 4.243 14 H 0.085 0.915 15 C -0.080 4.080 16 N -0.974 5.974 17 Si 0.981 3.019 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.267 1.267 21 N -0.297 5.297 22 N -0.111 5.111 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.144 0.856 36 H 0.230 0.770 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.370 0.630 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 25.425 -14.630 30.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.185 4.185 4 C -0.203 4.203 5 S -0.017 6.017 6 C -0.246 4.246 7 C 0.010 3.990 8 N -0.079 5.079 9 C -0.168 4.168 10 C -0.177 4.177 11 C 0.108 3.892 12 N -0.383 5.383 13 C -0.374 4.374 14 H 0.103 0.897 15 C -0.272 4.272 16 N -0.625 5.625 17 Si 0.809 3.191 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.192 1.192 21 N -0.164 5.164 22 N -0.090 5.090 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.130 0.870 35 H 0.162 0.838 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.201 0.799 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.956 26.264 -14.022 30.363 hybrid contribution -0.063 -1.685 -0.026 1.686 sum 5.893 24.580 -14.048 28.918 Atomic orbital electron populations 1.22155 0.92439 1.02217 1.03699 1.22818 0.98539 0.98819 0.93629 1.21677 1.01865 0.91348 1.03588 1.22142 1.02238 0.99712 0.96218 1.86738 1.70253 1.08887 1.35837 1.23491 1.04564 0.95545 1.01001 1.22052 1.01748 0.75423 0.99816 1.47558 1.05473 1.09032 1.45817 1.23908 1.02078 0.83779 1.07035 1.22318 0.89575 0.98374 1.07430 1.18976 0.99121 0.83431 0.87671 1.42534 1.83351 1.06336 1.06038 1.19710 1.37381 0.85669 0.94668 0.89683 1.25673 1.03059 1.02654 0.95778 1.69864 1.55708 1.36259 1.00650 0.85036 0.77220 0.79537 0.77318 1.20899 1.22588 1.19186 1.75032 1.24824 0.98937 1.17624 1.78128 1.00081 1.10115 1.20683 0.91448 0.90084 0.93406 0.91523 0.89304 0.91801 0.93339 0.90151 0.91046 0.89043 0.89435 0.86963 0.83773 0.75365 0.91779 0.95343 0.79867 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.32 71.98 0.60 -1.11 16 2 C -0.03 -0.32 0.95 -10.79 -0.01 -0.33 16 3 C -0.13 -1.09 8.48 71.98 0.61 -0.48 16 4 C -0.14 -1.49 8.32 71.98 0.60 -0.89 16 5 S -0.24 -3.58 20.65 -56.49 -1.17 -4.75 16 6 C -0.10 -1.57 5.18 71.98 0.37 -1.20 16 7 C 0.13 2.22 6.46 86.38 0.56 2.78 16 8 N -0.28 -7.64 3.44 -347.75 -1.20 -8.84 16 9 C -0.02 -0.46 11.50 83.49 0.96 0.50 16 10 C -0.04 -1.47 6.61 41.60 0.28 -1.19 16 11 C 0.24 9.95 6.82 85.63 0.58 10.54 16 12 N -0.74 -39.48 5.59 -347.18 -1.94 -41.42 16 13 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 14 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 15 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 16 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 17 Si 0.98 46.77 29.55 68.60 2.03 48.79 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 N -0.30 -12.44 12.41 -48.60 -0.60 -13.04 16 22 N -0.11 -3.93 12.92 37.02 0.48 -3.45 16 23 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.05 0.68 6.68 -2.38 -0.02 0.66 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.60 6.68 -2.39 -0.02 0.58 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 1.47 7.00 -2.39 -0.02 1.45 16 33 H 0.09 1.68 6.97 -2.39 -0.02 1.67 16 34 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.14 1.60 8.07 -2.39 -0.02 1.58 16 36 H 0.23 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.37 21.67 7.66 -92.71 -0.71 20.96 16 40 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -73.86 345.75 4.05 -69.81 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.31 Total: 22.90 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 5.85 Total: -8.58 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -2.98 Total: -128.18 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.17 Total: -4.75 kcal Total: -73.86 4.05 -69.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881323062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.412 kcal (2) G-P(sol) polarization free energy of solvation -73.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds