Wall clock time and date at job start Tue Mar 31 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 C 1.52999 * 109.46869 * 239.99801 * 2 1 3 5 5 O 1.45196 * 109.47145 * 120.00103 * 2 1 3 6 6 C 1.34640 * 117.00029 * 59.99673 * 5 2 1 7 7 O 1.21504 * 120.00146 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99675 * 179.97438 * 6 5 2 9 9 C 1.46505 * 119.99806 * 184.48089 * 8 6 5 10 10 C 1.53008 * 115.54973 * 296.93617 * 9 8 6 11 11 N 1.46501 * 109.46965 * 279.79271 * 10 9 8 12 12 C 1.34776 * 119.99721 * 175.66096 * 11 10 9 13 13 O 1.21693 * 119.99997 * 359.72783 * 12 11 10 14 14 C 1.46374 * 120.00104 * 179.97438 * 12 11 10 15 15 H 1.08006 * 119.99758 * 353.21448 * 14 12 11 16 16 C 1.40045 * 120.00062 * 173.20413 * 14 12 11 17 17 N 1.30668 * 120.00570 * 6.64864 * 16 14 12 18 18 Si 1.86803 * 119.99907 * 186.64585 * 16 14 12 19 19 H 1.48493 * 109.47399 * 94.97549 * 18 16 14 20 20 H 1.48501 * 109.47128 * 214.97384 * 18 16 14 21 21 H 1.48504 * 109.46991 * 334.97209 * 18 16 14 22 22 C 1.52996 * 117.50157 * 82.60619 * 9 8 6 23 23 C 1.52992 * 117.50134 * 151.27027 * 9 8 6 24 24 H 1.08997 * 109.47019 * 299.99973 * 1 2 3 25 25 H 1.08997 * 109.47199 * 60.00245 * 1 2 3 26 26 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47016 * 299.99795 * 3 2 1 29 29 H 1.08997 * 109.47185 * 60.00128 * 3 2 1 30 30 H 1.09000 * 109.47575 * 299.99953 * 4 2 1 31 31 H 1.09004 * 109.47316 * 60.00675 * 4 2 1 32 32 H 1.09000 * 109.46923 * 179.97438 * 4 2 1 33 33 H 0.97000 * 120.00300 * 4.48001 * 8 6 5 34 34 H 1.08998 * 109.47239 * 159.78597 * 10 9 8 35 35 H 1.09002 * 109.46569 * 39.78768 * 10 9 8 36 36 H 0.96997 * 120.00163 * 355.66330 * 11 10 9 37 37 H 0.96999 * 120.00750 * 179.97438 * 17 16 14 38 38 H 1.08996 * 117.50064 * 215.00373 * 22 9 8 39 39 H 1.08996 * 117.49641 * 0.02562 * 22 9 8 40 40 H 1.09004 * 117.50108 * 359.97034 * 23 9 8 41 41 H 1.09006 * 117.50230 * 144.96934 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.7572 -4.0925 2.5346 10 6 0.2693 -4.4387 2.6212 11 7 -0.2038 -4.2211 3.9906 12 6 -1.5095 -4.3780 4.2853 13 8 -2.2963 -4.6957 3.4130 14 6 -1.9822 -4.1611 5.6536 15 1 -1.2726 -3.9832 6.4482 16 6 -3.3544 -4.1839 5.9323 17 7 -4.2047 -4.5263 5.0011 18 14 -3.9693 -3.7249 7.6354 19 1 -4.3493 -2.2895 7.6544 20 1 -5.1532 -4.5548 7.9746 21 1 -2.8944 -3.9657 8.6313 22 6 2.6701 -5.0774 1.8017 23 6 2.7327 -4.9649 3.3270 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1299 -0.7209 -1.2495 33 1 2.5732 -2.2200 3.1146 34 1 0.1229 -5.4837 2.3480 35 1 -0.2922 -3.8022 1.9374 36 1 0.4227 -3.9640 4.6850 37 1 -5.1552 -4.5425 5.1942 38 1 2.2108 -5.9720 1.3812 39 1 3.5023 -4.6639 1.2320 40 1 3.6061 -4.4775 3.7602 41 1 2.3146 -5.7853 3.9103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887341742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:53 Heat of formation + Delta-G solvation = -97.824223 kcal Electronic energy + Delta-G solvation = -23182.381055 eV Core-core repulsion = 19677.327295 eV Total energy + Delta-G solvation = -3505.053759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.70203 -38.75528 -36.91465 -36.22429 -34.19036 -32.83763 -32.41284 -31.97365 -27.48602 -27.35817 -27.26974 -25.11326 -23.26668 -22.45108 -20.17906 -19.81442 -19.35390 -18.06681 -17.34673 -16.43484 -15.98053 -15.82741 -15.27567 -14.73314 -14.50204 -14.24685 -13.93053 -13.87022 -13.51779 -13.15629 -12.59444 -12.44531 -12.30406 -11.99525 -11.92668 -11.87169 -11.59115 -11.53203 -11.38588 -11.27380 -11.17446 -10.91729 -10.74141 -10.42231 -10.33477 -10.21101 -10.16369 -9.74699 -8.97072 -8.80928 -7.54591 -7.42130 -6.15032 -4.59016 2.18832 3.01515 3.16048 3.22878 3.26304 3.69682 4.10605 4.14741 4.63246 4.65726 4.68261 4.71924 4.79135 4.87147 5.03419 5.32598 5.37875 5.47501 5.53788 5.61420 5.62377 5.70149 5.77787 5.83718 5.85924 5.89034 5.92567 6.11745 6.20749 6.30048 6.43707 6.54526 6.65842 6.80773 7.47381 7.56083 7.97986 8.14308 8.37665 8.57035 9.06752 9.59687 10.64946 10.84054 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.004396 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.178769 B = 6367.989391 C = 7240.912022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.368 6.368 6 C 0.653 3.347 7 O -0.553 6.553 8 N -0.677 5.677 9 C 0.111 3.889 10 C 0.161 3.839 11 N -0.764 5.764 12 C 0.555 3.445 13 O -0.580 6.580 14 C -0.547 4.547 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.168 4.168 23 C -0.163 4.163 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.405 0.595 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.378 0.622 37 H 0.268 0.732 38 H 0.105 0.895 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.192 7.768 -6.617 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.101 3.899 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.284 6.284 6 C 0.406 3.594 7 O -0.441 6.441 8 N -0.335 5.335 9 C 0.024 3.976 10 C 0.035 3.965 11 N -0.420 5.420 12 C 0.359 3.641 13 O -0.462 6.462 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.207 4.207 23 C -0.201 4.201 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.240 0.760 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.209 0.791 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.042 7.303 -7.828 18.463 hybrid contribution 0.245 0.693 1.445 1.621 sum 15.288 7.996 -6.383 18.396 Atomic orbital electron populations 1.22528 0.93740 1.05596 1.02410 1.22025 0.94572 0.91274 0.82060 1.21851 1.01925 0.92805 1.03095 1.22514 1.01169 1.03794 0.96492 1.86268 1.71550 1.23983 1.46579 1.18015 0.78797 0.80256 0.82307 1.90916 1.39578 1.70152 1.43458 1.43917 1.59527 1.08599 1.21504 1.20870 0.93587 0.76865 1.06243 1.20632 0.87840 1.00277 0.87721 1.46106 1.10486 1.77580 1.07785 1.18221 0.78970 0.77088 0.89862 1.90610 1.53821 1.51809 1.50008 1.20866 0.92172 1.52502 0.92826 0.91485 1.25694 0.96773 0.92875 0.97808 1.70030 1.02593 1.34077 1.32969 0.86388 0.78775 0.78878 0.82855 1.19877 1.20483 1.18916 1.23395 1.01661 1.01224 0.94464 1.23356 1.00114 1.01793 0.94831 0.92033 0.91326 0.89014 0.91697 0.90270 0.91452 0.89178 0.91303 0.92459 0.76011 0.92474 0.90832 0.79083 0.92170 0.87641 0.88594 0.88237 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 8.37 37.16 0.31 -2.20 16 2 C 0.14 1.69 1.13 -90.62 -0.10 1.59 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 5 O -0.37 -5.27 9.94 -40.32 -0.40 -5.67 16 6 C 0.65 10.54 7.89 54.05 0.43 10.97 16 7 O -0.55 -10.38 10.43 -19.27 -0.20 -10.58 16 8 N -0.68 -9.58 5.47 -52.47 -0.29 -9.87 16 9 C 0.11 1.66 1.80 -131.82 -0.24 1.42 16 10 C 0.16 3.30 5.59 -4.04 -0.02 3.28 16 11 N -0.76 -17.35 5.51 -61.72 -0.34 -17.69 16 12 C 0.55 16.17 7.74 -12.99 -0.10 16.07 16 13 O -0.58 -19.41 15.05 5.20 0.08 -19.34 16 14 C -0.55 -15.66 9.53 -35.63 -0.34 -16.00 16 15 H 0.07 1.75 7.86 -52.48 -0.41 1.34 16 16 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 17 N -0.77 -23.51 11.86 55.55 0.66 -22.85 16 18 Si 0.91 20.39 29.56 -169.99 -5.03 15.37 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 22 C -0.17 -2.08 10.11 -26.70 -0.27 -2.35 16 23 C -0.16 -1.87 10.07 -26.70 -0.27 -2.14 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.55 5.88 -51.93 -0.31 1.25 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.28 5.88 -51.93 -0.31 0.97 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.40 4.64 8.94 -40.82 -0.36 4.28 16 34 H 0.06 1.20 7.95 -51.93 -0.41 0.79 16 35 H 0.07 1.78 6.60 -51.93 -0.34 1.44 16 36 H 0.38 7.47 8.39 -40.82 -0.34 7.13 16 37 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 38 H 0.11 1.29 8.08 -51.93 -0.42 0.87 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 343.40 15.07 5.17 5.17 Total: -1.00 -36.37 343.40 -6.67 -43.04 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.27 Total: 12.10 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -0.06 Total: 10.31 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.03 Total: -50.40 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.52 Total: -35.59 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.37 -6.67 -43.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887341742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.787 kcal (2) G-P(sol) polarization free energy of solvation -36.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds