Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47055 * 2 1 4 4 C 1.52999 * 109.46869 * 239.99801 * 2 1 3 5 5 O 1.45196 * 109.47145 * 120.00103 * 2 1 3 6 6 C 1.34640 * 117.00029 * 59.99673 * 5 2 1 7 7 O 1.21504 * 120.00146 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99675 * 179.97438 * 6 5 2 9 9 C 1.46505 * 119.99806 * 184.48089 * 8 6 5 10 10 C 1.53008 * 115.54973 * 296.93617 * 9 8 6 11 11 N 1.46501 * 109.46965 * 279.79271 * 10 9 8 12 12 C 1.34776 * 119.99721 * 175.66096 * 11 10 9 13 13 O 1.21693 * 119.99997 * 359.72783 * 12 11 10 14 14 C 1.46374 * 120.00104 * 179.97438 * 12 11 10 15 15 H 1.08006 * 119.99758 * 353.21448 * 14 12 11 16 16 C 1.40045 * 120.00062 * 173.20413 * 14 12 11 17 17 N 1.30668 * 120.00570 * 6.64864 * 16 14 12 18 18 Si 1.86803 * 119.99907 * 186.64585 * 16 14 12 19 19 H 1.48493 * 109.47399 * 94.97549 * 18 16 14 20 20 H 1.48501 * 109.47128 * 214.97384 * 18 16 14 21 21 H 1.48504 * 109.46991 * 334.97209 * 18 16 14 22 22 C 1.52996 * 117.50157 * 82.60619 * 9 8 6 23 23 C 1.52992 * 117.50134 * 151.27027 * 9 8 6 24 24 H 1.08997 * 109.47019 * 299.99973 * 1 2 3 25 25 H 1.08997 * 109.47199 * 60.00245 * 1 2 3 26 26 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47083 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47016 * 299.99795 * 3 2 1 29 29 H 1.08997 * 109.47185 * 60.00128 * 3 2 1 30 30 H 1.09000 * 109.47575 * 299.99953 * 4 2 1 31 31 H 1.09004 * 109.47316 * 60.00675 * 4 2 1 32 32 H 1.09000 * 109.46923 * 179.97438 * 4 2 1 33 33 H 0.97000 * 120.00300 * 4.48001 * 8 6 5 34 34 H 1.08998 * 109.47239 * 159.78597 * 10 9 8 35 35 H 1.09002 * 109.46569 * 39.78768 * 10 9 8 36 36 H 0.96997 * 120.00163 * 355.66330 * 11 10 9 37 37 H 0.96999 * 120.00750 * 179.97438 * 17 16 14 38 38 H 1.08996 * 117.50064 * 215.00373 * 22 9 8 39 39 H 1.08996 * 117.49641 * 0.02562 * 22 9 8 40 40 H 1.09004 * 117.50108 * 359.97034 * 23 9 8 41 41 H 1.09006 * 117.50230 * 144.96934 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 1.7572 -4.0925 2.5346 10 6 0.2693 -4.4387 2.6212 11 7 -0.2038 -4.2211 3.9906 12 6 -1.5095 -4.3780 4.2853 13 8 -2.2963 -4.6957 3.4130 14 6 -1.9822 -4.1611 5.6536 15 1 -1.2726 -3.9832 6.4482 16 6 -3.3544 -4.1839 5.9323 17 7 -4.2047 -4.5263 5.0011 18 14 -3.9693 -3.7249 7.6354 19 1 -4.3493 -2.2895 7.6544 20 1 -5.1532 -4.5548 7.9746 21 1 -2.8944 -3.9657 8.6313 22 6 2.6701 -5.0774 1.8017 23 6 2.7327 -4.9649 3.3270 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1393 32 1 3.1299 -0.7209 -1.2495 33 1 2.5732 -2.2200 3.1146 34 1 0.1229 -5.4837 2.3480 35 1 -0.2922 -3.8022 1.9374 36 1 0.4227 -3.9640 4.6850 37 1 -5.1552 -4.5425 5.1942 38 1 2.2108 -5.9720 1.3812 39 1 3.5023 -4.6639 1.2320 40 1 3.6061 -4.4775 3.7602 41 1 2.3146 -5.7853 3.9103 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887341742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = -126.788190 kcal Electronic energy + Delta-G solvation = -23183.637027 eV Core-core repulsion = 19677.327295 eV Total energy + Delta-G solvation = -3506.309731 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.88319 -40.08234 -38.86153 -37.49266 -35.31453 -34.86496 -34.15402 -33.50273 -29.28772 -28.39037 -28.29228 -26.99056 -24.44261 -23.49523 -21.78774 -21.21987 -20.84832 -19.29366 -19.22311 -17.69493 -17.43645 -17.16649 -16.96134 -16.14415 -15.95442 -15.60899 -15.41171 -15.21889 -15.07283 -14.51400 -14.28691 -13.60578 -13.44500 -13.28732 -13.16054 -13.08362 -12.92135 -12.85616 -12.75678 -12.60940 -12.57635 -12.44092 -12.32097 -12.01968 -11.89115 -11.42776 -11.36564 -10.99290 -10.93193 -10.22848 -9.82088 -9.48638 -8.30064 -6.85498 1.08165 1.39655 1.41430 1.57538 1.77512 2.23456 2.47118 2.58548 3.03957 3.20712 3.58072 3.65140 3.74776 3.78188 3.85812 3.93685 3.99546 4.39385 4.55118 4.59498 4.68482 4.71404 4.74303 4.77529 4.83177 4.87530 4.91000 4.95863 5.11049 5.18642 5.27034 5.30732 5.31886 5.40997 5.60305 5.86806 6.21124 6.26098 6.42144 6.86260 7.39339 7.56351 8.49262 8.67360 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.004396 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.178769 B = 6367.989391 C = 7240.912022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.126 3.874 3 C -0.132 4.132 4 C -0.177 4.177 5 O -0.367 6.367 6 C 0.645 3.355 7 O -0.586 6.586 8 N -0.664 5.664 9 C 0.084 3.916 10 C 0.168 3.832 11 N -0.745 5.745 12 C 0.535 3.465 13 O -0.637 6.637 14 C -0.572 4.572 15 H 0.091 0.909 16 C 0.027 3.973 17 N -0.825 5.825 18 Si 1.000 3.000 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.244 1.244 22 C -0.157 4.157 23 C -0.128 4.128 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.419 0.581 34 H 0.043 0.957 35 H 0.027 0.973 36 H 0.396 0.604 37 H 0.274 0.726 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.136 0.864 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.669 9.154 -4.795 21.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.090 3.910 3 C -0.189 4.189 4 C -0.234 4.234 5 O -0.282 6.282 6 C 0.398 3.602 7 O -0.476 6.476 8 N -0.324 5.324 9 C -0.003 4.003 10 C 0.043 3.957 11 N -0.399 5.399 12 C 0.339 3.661 13 O -0.525 6.525 14 C -0.608 4.608 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.454 5.454 18 Si 0.819 3.181 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.167 1.167 22 C -0.196 4.196 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.257 0.743 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.230 0.770 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.132 0.868 40 H 0.154 0.846 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 17.615 8.714 -5.979 20.542 hybrid contribution -0.527 0.253 0.785 0.979 sum 17.087 8.966 -5.195 19.984 Atomic orbital electron populations 1.22495 0.95281 1.03053 1.03263 1.22399 0.93603 0.93172 0.81822 1.21870 1.02725 0.90105 1.04236 1.22447 1.01907 1.02012 0.97022 1.86285 1.71337 1.22948 1.47616 1.18327 0.78547 0.80818 0.82473 1.90917 1.40945 1.70966 1.44792 1.43795 1.58995 1.08297 1.21291 1.20527 0.90752 0.78020 1.11025 1.20476 0.91570 0.98479 0.85216 1.45705 1.08988 1.75954 1.09301 1.18719 0.80492 0.76803 0.90086 1.90563 1.55960 1.54427 1.51526 1.21420 0.93518 1.52668 0.93201 0.89066 1.27037 0.96671 0.91830 1.03281 1.70214 1.03352 1.35406 1.36451 0.84975 0.78506 0.78615 0.75967 1.19014 1.19778 1.16654 1.23477 1.00672 0.99739 0.95735 1.23506 0.99098 0.99781 0.94164 0.92833 0.88814 0.93142 0.90388 0.87900 0.91557 0.92385 0.89118 0.91108 0.74261 0.93835 0.95436 0.77035 0.91632 0.88022 0.86818 0.84560 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.13 8.37 71.98 0.60 -4.53 16 2 C 0.13 3.03 1.13 -10.80 -0.01 3.02 16 3 C -0.13 -2.09 8.85 71.98 0.64 -1.45 16 4 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 5 O -0.37 -10.38 9.94 -55.49 -0.55 -10.93 16 6 C 0.64 21.24 7.89 129.79 1.02 22.26 16 7 O -0.59 -23.37 10.43 19.83 0.21 -23.16 16 8 N -0.66 -18.37 5.47 -550.32 -3.01 -21.37 16 9 C 0.08 2.46 1.80 3.60 0.01 2.47 16 10 C 0.17 7.24 5.59 86.38 0.48 7.72 16 11 N -0.74 -34.70 5.51 -467.39 -2.58 -37.28 16 12 C 0.53 32.36 7.74 86.36 0.67 33.02 16 13 O -0.64 -45.22 15.05 -4.33 -0.07 -45.28 16 14 C -0.57 -33.03 9.53 24.83 0.24 -32.79 16 15 H 0.09 4.65 7.86 -2.91 -0.02 4.63 16 16 C 0.03 1.51 5.49 85.30 0.47 1.98 16 17 N -0.82 -52.14 11.86 21.83 0.26 -51.88 16 18 Si 1.00 41.53 29.56 68.60 2.03 43.56 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.24 -9.20 7.11 99.48 0.71 -8.49 16 22 C -0.16 -3.63 10.11 30.62 0.31 -3.32 16 23 C -0.13 -2.56 10.07 30.62 0.31 -2.25 16 24 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.05 1.84 5.88 -2.39 -0.01 1.83 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.70 5.88 -2.39 -0.01 1.69 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.42 8.83 8.94 -92.71 -0.83 8.00 16 34 H 0.04 1.96 7.95 -2.39 -0.02 1.94 16 35 H 0.03 1.44 6.60 -2.39 -0.02 1.42 16 36 H 0.40 15.44 8.39 -92.71 -0.78 14.66 16 37 H 0.27 15.65 8.29 -92.71 -0.77 14.89 16 38 H 0.10 2.43 8.08 -2.39 -0.02 2.41 16 39 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -85.80 343.40 1.07 -84.72 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -0.55 Total: 38.83 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 5.34 Total: 22.80 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -5.33 Total: -110.54 kcal Atomic # 8 Polarization: -78.96 SS G_CDS: -0.41 Total: -79.37 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -85.80 1.07 -84.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887341742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.064 kcal (2) G-P(sol) polarization free energy of solvation -85.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds