Wall clock time and date at job start Tue Mar 31 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 C 1.52997 * 109.47065 * 239.99964 * 2 1 3 5 5 O 1.45196 * 109.47364 * 60.00170 * 4 2 1 6 6 C 1.34225 * 116.99913 * 179.97438 * 5 4 2 7 7 O 1.20825 * 120.00485 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00196 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47468 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47383 * 180.02562 * 9 8 6 11 11 H 1.08008 * 119.99693 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00358 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99971 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99898 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47393 * 90.00277 * 14 12 10 16 16 H 1.48500 * 109.47036 * 210.00594 * 14 12 10 17 17 H 1.48503 * 109.47147 * 329.99958 * 14 12 10 18 18 N 1.46497 * 109.47002 * 119.99918 * 2 1 3 19 19 C 1.47057 * 125.40952 * 300.00131 * 18 2 1 20 20 C 1.54105 * 103.99235 * 179.97438 * 19 18 2 21 21 N 1.47394 * 103.70056 * 0.10684 * 20 19 18 22 22 C 1.33947 * 109.21036 * 359.88525 * 21 20 19 23 23 O 1.21594 * 123.03846 * 180.09410 * 22 21 20 24 24 H 1.09002 * 109.47661 * 299.99949 * 1 2 3 25 25 H 1.09002 * 109.47263 * 60.00182 * 1 2 3 26 26 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46674 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46970 * 299.99484 * 3 2 1 29 29 H 1.08995 * 109.46961 * 59.99932 * 3 2 1 30 30 H 1.09000 * 109.46988 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47340 * 299.99502 * 4 2 1 32 32 H 1.09002 * 109.46697 * 300.00124 * 8 6 5 33 33 H 1.08994 * 109.46818 * 59.99697 * 8 6 5 34 34 H 1.09004 * 109.46767 * 300.00090 * 9 8 6 35 35 H 1.08997 * 109.47164 * 59.99519 * 9 8 6 36 36 H 0.97005 * 120.00101 * 179.97438 * 13 12 10 37 37 H 1.09002 * 110.54831 * 298.59477 * 19 18 2 38 38 H 1.08997 * 110.54826 * 61.25951 * 19 18 2 39 39 H 1.08996 * 110.55034 * 118.66113 * 20 19 18 40 40 H 1.09001 * 110.54910 * 241.47819 * 20 19 18 41 41 H 0.97000 * 125.37712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5560 -0.0368 -2.4348 6 6 1.9172 -0.5466 -3.6228 7 8 2.6142 -1.5324 -3.6705 8 6 1.4533 0.1106 -4.8972 9 6 2.0002 -0.6632 -6.0985 10 6 1.5369 -0.0057 -7.3728 11 1 0.9141 0.8758 -7.3302 12 6 1.9079 -0.5292 -8.5931 13 7 1.5031 0.0443 -9.7052 14 14 2.9855 -2.0532 -8.6669 15 1 2.1280 -3.2654 -8.6872 16 1 3.8157 -2.0134 -9.8975 17 1 3.8698 -2.0924 -7.4745 18 7 2.0183 -0.6906 1.1962 19 6 1.7373 -0.2932 2.5839 20 6 2.4802 -1.3450 3.4304 21 7 3.1047 -2.2241 2.4255 22 6 2.7924 -1.7837 1.1997 23 8 3.1766 -2.3273 0.1821 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7490 -1.2492 32 1 0.3638 0.1099 -4.9305 33 1 1.8171 1.1375 -4.9297 34 1 3.0898 -0.6629 -6.0652 35 1 1.6360 -1.6900 -6.0657 36 1 1.7644 -0.3238 -10.5638 37 1 2.1297 0.7040 2.7832 38 1 0.6661 -0.3284 2.7824 39 1 3.2408 -0.8698 4.0497 40 1 1.7777 -1.9050 4.0476 41 1 3.6537 -2.9994 2.6213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892976379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:00 Heat of formation + Delta-G solvation = -102.872302 kcal Electronic energy + Delta-G solvation = -22923.604268 eV Core-core repulsion = 19418.331608 eV Total energy + Delta-G solvation = -3505.272660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51337 -39.88415 -37.24151 -36.63194 -35.41328 -33.54378 -31.73745 -31.31386 -29.15889 -27.55975 -27.44374 -25.88277 -23.31662 -22.58511 -21.55912 -19.68326 -19.33084 -17.82982 -17.35402 -16.92658 -16.64626 -16.22021 -16.14534 -15.12225 -14.87391 -14.56105 -14.25952 -14.09405 -13.83483 -13.80772 -13.44156 -12.86416 -12.76799 -12.69868 -12.39233 -12.22318 -12.20899 -11.97931 -11.49451 -11.44280 -11.25583 -10.96198 -10.30713 -10.22765 -10.07905 -9.93606 -9.83845 -9.59938 -9.52096 -9.20248 -8.90783 -8.50787 -6.02836 -4.02230 2.08380 2.86110 2.91567 3.14938 3.39489 3.46052 3.57266 3.62128 3.96865 4.34163 4.39895 4.51575 4.67903 4.76029 4.83568 4.94062 5.23199 5.23313 5.32372 5.37046 5.48128 5.52583 5.55214 5.62695 5.75278 5.90082 6.00158 6.05701 6.07994 6.10776 6.47977 6.59906 6.79172 6.95647 7.21239 7.31931 7.38611 7.76478 8.33048 8.38407 8.52689 8.99586 9.59557 11.09728 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.003319 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.164032 B = 8433.915010 C = 9027.671833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.204 3.796 3 C -0.156 4.156 4 C 0.077 3.923 5 O -0.369 6.369 6 C 0.456 3.544 7 O -0.504 6.504 8 C -0.093 4.093 9 C -0.003 4.003 10 C -0.525 4.525 11 H 0.075 0.925 12 C 0.071 3.929 13 N -0.902 5.902 14 Si 0.876 3.124 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.261 1.261 18 N -0.625 5.625 19 C 0.094 3.906 20 C 0.094 3.906 21 N -0.744 5.744 22 C 0.693 3.307 23 O -0.573 6.573 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.026 0.974 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 1.877 31.391 31.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.120 3.880 3 C -0.215 4.215 4 C 0.003 3.997 5 O -0.286 6.286 6 C 0.299 3.701 7 O -0.390 6.390 8 C -0.131 4.131 9 C -0.041 4.041 10 C -0.563 4.563 11 H 0.093 0.907 12 C -0.131 4.131 13 N -0.540 5.540 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.185 1.185 18 N -0.365 5.365 19 C -0.029 4.029 20 C -0.031 4.031 21 N -0.407 5.407 22 C 0.393 3.607 23 O -0.450 6.450 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.941 1.376 30.536 30.581 hybrid contribution 0.829 -1.221 0.295 1.505 sum -0.112 0.155 30.831 30.831 Atomic orbital electron populations 1.22181 0.93199 1.02873 1.03199 1.20104 0.94355 0.91784 0.81711 1.22180 1.01773 0.94303 1.03199 1.23146 1.00173 0.95377 0.80976 1.86390 1.70628 1.56449 1.15166 1.24652 0.77448 0.82963 0.85009 1.90657 1.35192 1.25671 1.87485 1.21513 1.02925 1.01179 0.87452 1.19486 0.97145 0.95745 0.91706 1.21037 1.32725 1.13844 0.88686 0.90655 1.24946 0.95597 0.97010 0.95553 1.69905 1.45783 1.40786 0.97558 0.86814 0.81409 0.83622 0.77842 1.20164 1.21351 1.18520 1.47271 1.53810 1.29427 1.06040 1.22313 1.01135 0.98896 0.80571 1.22397 0.97261 0.91500 0.91984 1.45213 1.56824 1.33121 1.05566 1.16066 0.79418 0.80982 0.84226 1.91074 1.59636 1.61648 1.32604 0.92148 0.89677 0.92151 0.92151 0.89676 0.92148 0.90028 0.90035 0.88455 0.88423 0.95588 0.96036 0.92649 0.89909 0.89887 0.89952 0.89954 0.72952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 8.40 37.16 0.31 -1.16 16 2 C 0.20 2.29 1.06 -131.82 -0.14 2.15 16 3 C -0.16 -1.47 8.40 37.16 0.31 -1.16 16 4 C 0.08 1.24 2.86 37.16 0.11 1.35 16 5 O -0.37 -6.20 8.88 -39.24 -0.35 -6.55 16 6 C 0.46 9.24 7.96 36.01 0.29 9.53 16 7 O -0.50 -12.07 15.73 -18.75 -0.29 -12.37 16 8 C -0.09 -1.89 5.75 -27.88 -0.16 -2.05 16 9 C 0.00 -0.08 3.33 -27.89 -0.09 -0.18 16 10 C -0.53 -15.15 9.66 -34.44 -0.33 -15.48 16 11 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 12 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 13 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 14 Si 0.88 22.87 27.47 -169.99 -4.67 18.20 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 17 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 18 N -0.62 -6.26 2.76 -163.88 -0.45 -6.71 16 19 C 0.09 0.49 6.86 -3.16 -0.02 0.46 16 20 C 0.09 0.38 8.08 -2.98 -0.02 0.35 16 21 N -0.74 -5.97 6.39 -64.46 -0.41 -6.38 16 22 C 0.69 8.70 8.47 -88.40 -0.75 7.95 16 23 O -0.57 -10.15 13.91 5.28 0.07 -10.07 16 24 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 25 H 0.08 0.84 7.68 -51.93 -0.40 0.45 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.84 7.68 -51.93 -0.40 0.45 16 29 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 30 H 0.08 1.50 7.07 -51.93 -0.37 1.13 16 31 H 0.08 1.49 7.07 -51.93 -0.37 1.13 16 32 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 33 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 34 H 0.03 0.68 7.15 -51.93 -0.37 0.31 16 35 H 0.02 0.56 7.53 -51.93 -0.39 0.17 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.08 0.30 7.84 -51.93 -0.41 -0.10 16 38 H 0.08 0.30 7.83 -51.93 -0.41 -0.10 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.43 2.83 8.96 -40.82 -0.37 2.46 16 LS Contribution 335.51 15.07 5.06 5.06 Total: -1.00 -37.36 335.51 -7.27 -44.63 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.40 Total: -2.24 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.60 Total: 3.76 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.09 Total: -40.41 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.57 Total: -28.99 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.67 Total: 18.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.36 -7.27 -44.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892976379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.242 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds