Wall clock time and date at job start Tue Mar 31 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 C 1.52997 * 109.47065 * 239.99964 * 2 1 3 5 5 O 1.45196 * 109.47364 * 60.00170 * 4 2 1 6 6 C 1.34225 * 116.99913 * 179.97438 * 5 4 2 7 7 O 1.20825 * 120.00485 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00196 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47468 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47383 * 180.02562 * 9 8 6 11 11 H 1.08008 * 119.99693 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00358 * 179.97438 * 10 9 8 13 13 N 1.31511 * 119.99971 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99898 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47393 * 90.00277 * 14 12 10 16 16 H 1.48500 * 109.47036 * 210.00594 * 14 12 10 17 17 H 1.48503 * 109.47147 * 329.99958 * 14 12 10 18 18 N 1.46497 * 109.47002 * 119.99918 * 2 1 3 19 19 C 1.47057 * 125.40952 * 300.00131 * 18 2 1 20 20 C 1.54105 * 103.99235 * 179.97438 * 19 18 2 21 21 N 1.47394 * 103.70056 * 0.10684 * 20 19 18 22 22 C 1.33947 * 109.21036 * 359.88525 * 21 20 19 23 23 O 1.21594 * 123.03846 * 180.09410 * 22 21 20 24 24 H 1.09002 * 109.47661 * 299.99949 * 1 2 3 25 25 H 1.09002 * 109.47263 * 60.00182 * 1 2 3 26 26 H 1.09002 * 109.47282 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46674 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46970 * 299.99484 * 3 2 1 29 29 H 1.08995 * 109.46961 * 59.99932 * 3 2 1 30 30 H 1.09000 * 109.46988 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47340 * 299.99502 * 4 2 1 32 32 H 1.09002 * 109.46697 * 300.00124 * 8 6 5 33 33 H 1.08994 * 109.46818 * 59.99697 * 8 6 5 34 34 H 1.09004 * 109.46767 * 300.00090 * 9 8 6 35 35 H 1.08997 * 109.47164 * 59.99519 * 9 8 6 36 36 H 0.97005 * 120.00101 * 179.97438 * 13 12 10 37 37 H 1.09002 * 110.54831 * 298.59477 * 19 18 2 38 38 H 1.08997 * 110.54826 * 61.25951 * 19 18 2 39 39 H 1.08996 * 110.55034 * 118.66113 * 20 19 18 40 40 H 1.09001 * 110.54910 * 241.47819 * 20 19 18 41 41 H 0.97000 * 125.37712 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.5560 -0.0368 -2.4348 6 6 1.9172 -0.5466 -3.6228 7 8 2.6142 -1.5324 -3.6705 8 6 1.4533 0.1106 -4.8972 9 6 2.0002 -0.6632 -6.0985 10 6 1.5369 -0.0057 -7.3728 11 1 0.9141 0.8758 -7.3302 12 6 1.9079 -0.5292 -8.5931 13 7 1.5031 0.0443 -9.7052 14 14 2.9855 -2.0532 -8.6669 15 1 2.1280 -3.2654 -8.6872 16 1 3.8157 -2.0134 -9.8975 17 1 3.8698 -2.0924 -7.4745 18 7 2.0183 -0.6906 1.1962 19 6 1.7373 -0.2932 2.5839 20 6 2.4802 -1.3450 3.4304 21 7 3.1047 -2.2241 2.4255 22 6 2.7924 -1.7837 1.1997 23 8 3.1766 -2.3273 0.1821 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -1.7490 -1.2492 32 1 0.3638 0.1099 -4.9305 33 1 1.8171 1.1375 -4.9297 34 1 3.0898 -0.6629 -6.0652 35 1 1.6360 -1.6900 -6.0657 36 1 1.7644 -0.3238 -10.5638 37 1 2.1297 0.7040 2.7832 38 1 0.6661 -0.3284 2.7824 39 1 3.2408 -0.8698 4.0497 40 1 1.7777 -1.9050 4.0476 41 1 3.6537 -2.9994 2.6213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892976379.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:59 Heat of formation + Delta-G solvation = -130.126526 kcal Electronic energy + Delta-G solvation = -22924.786100 eV Core-core repulsion = 19418.331608 eV Total energy + Delta-G solvation = -3506.454492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.32846 -41.42432 -38.44539 -37.57041 -36.62894 -35.65086 -33.46142 -32.41830 -29.73058 -29.02036 -28.30065 -27.46929 -24.25143 -23.35880 -23.16543 -21.41161 -20.21673 -19.37723 -18.57176 -18.26056 -17.82161 -17.49365 -17.38812 -16.41925 -16.18729 -15.71395 -15.59276 -15.25515 -14.83077 -14.78295 -14.74020 -14.52638 -13.96980 -13.85242 -13.40847 -13.22389 -13.20096 -12.94616 -12.89218 -12.73459 -12.32840 -12.29337 -12.17676 -12.04331 -11.84313 -11.72757 -11.48156 -11.38940 -11.00560 -10.80234 -10.35030 -9.52254 -8.33487 -6.36775 1.20370 1.21616 1.31530 1.33874 1.48480 1.88263 2.02942 2.32828 3.01848 3.02584 3.34351 3.59088 3.67391 3.89021 3.93404 4.19268 4.30079 4.37821 4.41444 4.44662 4.50235 4.57112 4.73333 4.74566 4.83678 4.88395 4.88447 4.98159 5.01327 5.21933 5.26371 5.31159 5.34011 5.38556 5.57510 5.68481 6.15918 6.20330 6.48537 6.67537 6.78456 7.28342 7.51016 8.81888 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034724 B = 0.003319 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.164032 B = 8433.915010 C = 9027.671833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.206 3.794 3 C -0.151 4.151 4 C 0.084 3.916 5 O -0.348 6.348 6 C 0.464 3.536 7 O -0.546 6.546 8 C -0.085 4.085 9 C 0.000 4.000 10 C -0.528 4.528 11 H 0.057 0.943 12 C 0.018 3.982 13 N -0.939 5.939 14 Si 0.934 3.066 15 H -0.268 1.268 16 H -0.276 1.276 17 H -0.265 1.265 18 N -0.626 5.626 19 C 0.087 3.913 20 C 0.093 3.907 21 N -0.738 5.738 22 C 0.677 3.323 23 O -0.640 6.640 24 H 0.097 0.903 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.013 0.987 35 H 0.012 0.988 36 H 0.269 0.731 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 2.899 34.546 34.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.122 3.878 3 C -0.209 4.209 4 C 0.010 3.990 5 O -0.265 6.265 6 C 0.309 3.691 7 O -0.436 6.436 8 C -0.123 4.123 9 C -0.038 4.038 10 C -0.566 4.566 11 H 0.075 0.925 12 C -0.180 4.180 13 N -0.580 5.580 14 Si 0.758 3.242 15 H -0.193 1.193 16 H -0.201 1.201 17 H -0.189 1.189 18 N -0.366 5.366 19 C -0.034 4.034 20 C -0.030 4.030 21 N -0.399 5.399 22 C 0.377 3.623 23 O -0.522 6.522 24 H 0.116 0.884 25 H 0.099 0.901 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -1.751 2.439 33.781 33.914 hybrid contribution 1.039 -1.491 -0.575 1.906 sum -0.712 0.948 33.206 33.227 Atomic orbital electron populations 1.22157 0.91338 1.02554 1.04839 1.20108 0.95614 0.92127 0.79923 1.22157 1.00953 0.92944 1.04839 1.23156 0.98475 0.94868 0.82525 1.86370 1.69768 1.55651 1.14668 1.24560 0.76458 0.82067 0.86005 1.90653 1.37208 1.27582 1.88157 1.21347 1.04053 1.01255 0.85611 1.19339 0.96355 0.95636 0.92470 1.21305 1.31929 1.13234 0.90120 0.92472 1.25722 0.97003 0.99862 0.95421 1.70002 1.47284 1.42444 0.98231 0.85900 0.79889 0.80419 0.77949 1.19338 1.20087 1.18919 1.47314 1.52997 1.28593 1.07666 1.22767 1.02985 1.00294 0.77382 1.22759 0.98216 0.90887 0.91147 1.45249 1.56185 1.33397 1.05081 1.16503 0.79712 0.81522 0.84599 1.91024 1.62205 1.63744 1.35262 0.88405 0.90133 0.93451 0.93464 0.90134 0.88403 0.93021 0.93004 0.86260 0.86283 0.96876 0.96977 0.92234 0.87612 0.87579 0.87438 0.87440 0.72477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.40 71.98 0.60 -1.87 16 2 C 0.21 4.36 1.06 3.60 0.00 4.37 16 3 C -0.15 -2.48 8.40 71.98 0.60 -1.87 16 4 C 0.08 2.79 2.86 71.98 0.21 3.00 16 5 O -0.35 -11.74 8.88 -51.37 -0.46 -12.20 16 6 C 0.46 19.00 7.96 71.24 0.57 19.56 16 7 O -0.55 -27.09 15.73 21.97 0.35 -26.75 16 8 C -0.09 -3.42 5.75 29.85 0.17 -3.25 16 9 C 0.00 -0.02 3.33 29.85 0.10 0.08 16 10 C -0.53 -30.68 9.66 25.60 0.25 -30.43 16 11 H 0.06 3.45 7.99 -2.91 -0.02 3.43 16 12 C 0.02 1.09 5.47 84.65 0.46 1.55 16 13 N -0.94 -58.99 13.96 21.45 0.30 -58.69 16 14 Si 0.93 47.51 27.47 68.60 1.88 49.39 16 15 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 16 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 17 H -0.26 -13.54 6.54 99.48 0.65 -12.89 16 18 N -0.63 -11.51 2.76 -791.11 -2.19 -13.70 16 19 C 0.09 0.54 6.86 86.65 0.59 1.13 16 20 C 0.09 0.40 8.08 86.58 0.70 1.10 16 21 N -0.74 -10.88 6.39 -476.58 -3.04 -13.92 16 22 C 0.68 17.08 8.47 179.57 1.52 18.60 16 23 O -0.64 -24.24 13.91 -4.01 -0.06 -24.29 16 24 H 0.10 0.88 7.70 -2.39 -0.02 0.87 16 25 H 0.08 1.41 7.68 -2.39 -0.02 1.39 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.41 7.68 -2.39 -0.02 1.40 16 29 H 0.10 0.89 7.70 -2.39 -0.02 0.87 16 30 H 0.05 2.03 7.07 -2.39 -0.02 2.01 16 31 H 0.05 2.03 7.07 -2.39 -0.02 2.02 16 32 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 33 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 34 H 0.01 0.69 7.15 -2.38 -0.02 0.67 16 35 H 0.01 0.63 7.53 -2.39 -0.02 0.61 16 36 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 37 H 0.11 0.22 7.84 -2.39 -0.02 0.20 16 38 H 0.11 0.22 7.83 -2.39 -0.02 0.20 16 39 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.43 5.43 8.96 -92.71 -0.83 4.60 16 Total: -1.00 -85.51 335.51 2.71 -82.80 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.14 Total: 5.39 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 5.78 Total: 11.97 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -4.93 Total: -86.31 kcal Atomic # 8 Polarization: -63.07 SS G_CDS: -0.17 Total: -63.24 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.88 Total: 49.39 kcal Total: -85.51 2.71 -82.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892976379.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.328 kcal (2) G-P(sol) polarization free energy of solvation -85.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds