Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00375 * 2 1 4 4 C 1.52997 * 109.47420 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47327 * 305.00600 * 4 3 2 6 6 O 1.42906 * 109.46668 * 65.00419 * 4 3 2 7 7 C 1.42902 * 113.99884 * 269.99610 * 6 4 3 8 8 C 1.50699 * 109.47315 * 185.00183 * 4 3 2 9 9 N 1.29955 * 126.28534 * 284.97709 * 8 4 3 10 10 O 1.21304 * 110.24536 * 179.97438 * 9 8 4 11 11 C 1.33640 * 109.81361 * 0.02562 * 10 9 8 12 12 C 1.50706 * 126.55033 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46953 * 270.02715 * 12 11 10 14 14 C 1.53006 * 109.46623 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46957 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99816 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00340 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00296 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47086 * 59.99480 * 20 18 16 22 22 H 1.48494 * 109.47288 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46879 * 299.99424 * 20 18 16 24 24 N 1.31130 * 106.90009 * 0.22679 * 11 10 9 25 25 H 1.09001 * 109.47651 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46959 * 299.99927 * 1 2 3 27 27 H 1.09005 * 109.47457 * 59.99240 * 1 2 3 28 28 H 1.09003 * 109.47036 * 60.00312 * 3 2 1 29 29 H 1.09002 * 109.47485 * 300.00739 * 3 2 1 30 30 H 1.08997 * 109.46889 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47436 * 300.00252 * 7 6 4 32 32 H 1.09000 * 109.46824 * 60.00338 * 7 6 4 33 33 H 1.09000 * 109.46974 * 150.02463 * 12 11 10 34 34 H 1.09001 * 109.46547 * 30.02554 * 12 11 10 35 35 H 1.09000 * 109.47486 * 60.00062 * 13 12 11 36 36 H 1.09001 * 109.47362 * 299.99339 * 13 12 11 37 37 H 1.08993 * 109.46955 * 300.00075 * 14 13 12 38 38 H 1.09000 * 109.47050 * 59.99904 * 14 13 12 39 39 H 1.08993 * 109.47839 * 299.99931 * 15 14 13 40 40 H 1.09000 * 109.47160 * 60.00369 * 15 14 13 41 41 H 0.97000 * 120.00540 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 8 3.9658 0.5792 -1.2202 7 6 4.0472 -0.8464 -1.1649 8 6 4.1480 2.5559 0.1245 9 7 4.2206 3.4533 -0.8126 10 8 4.7708 4.4511 -0.3966 11 6 5.1122 4.2796 0.8841 12 6 5.8142 5.2787 1.7673 13 6 7.3276 5.0846 1.6543 14 6 8.0402 6.0994 2.5505 15 6 9.5536 5.9049 2.4380 16 6 10.2556 6.9040 3.3212 17 1 9.6798 7.6071 3.9048 18 6 11.6328 6.9206 3.3843 19 7 12.3339 6.0641 2.6741 20 14 12.5029 8.1585 4.4797 21 1 12.0815 7.9546 5.8890 22 1 13.9717 7.9699 4.3704 23 1 12.1469 9.5350 4.0508 24 7 4.7246 3.0738 1.2237 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.6887 1.8463 0.8900 29 1 1.6886 1.8465 -0.8899 30 1 4.3801 -1.2290 -2.1298 31 1 4.7578 -1.1401 -0.3924 32 1 3.0652 -1.2576 -0.9307 33 1 5.5049 5.1295 2.8018 34 1 5.5528 6.2889 1.4521 35 1 7.6368 5.2339 0.6197 36 1 7.5889 4.0744 1.9695 37 1 7.7788 7.1094 2.2350 38 1 7.7310 5.9506 3.5851 39 1 9.8147 4.8949 2.7538 40 1 9.8631 6.0535 1.4034 41 1 13.3028 6.0754 2.7186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896654426.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = -41.855129 kcal Electronic energy + Delta-G solvation = -21672.862237 eV Core-core repulsion = 18170.235480 eV Total energy + Delta-G solvation = -3502.626757 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.68436 -39.26306 -37.44045 -36.24754 -35.51066 -33.47597 -32.16902 -30.69660 -29.35097 -27.43046 -26.34125 -25.80042 -24.55186 -23.53745 -22.30139 -20.88940 -20.18373 -18.15629 -17.85621 -17.21779 -16.74757 -16.38327 -16.20979 -15.65712 -15.45954 -15.13521 -14.63678 -14.40321 -14.24848 -13.31428 -13.02746 -12.98864 -12.84243 -12.58939 -12.26762 -12.08235 -11.82756 -11.72869 -11.60543 -11.47989 -11.14169 -11.01971 -10.65482 -10.60462 -10.56790 -10.23771 -10.07046 -9.94046 -9.71397 -9.31540 -9.06007 -8.34155 -5.99110 -4.01864 1.07399 1.98660 2.72217 2.82686 3.33789 3.37116 3.38459 3.40480 3.86079 4.04656 4.43077 4.46323 4.62880 4.80535 4.91158 4.94891 5.01103 5.09522 5.17143 5.20531 5.22881 5.30378 5.31238 5.36611 5.41371 5.55933 5.73374 5.82042 5.99129 6.05711 6.34130 6.58591 6.67070 6.72085 6.82387 7.09814 7.67764 7.81760 8.00707 8.07633 8.42369 9.05329 9.62212 11.12152 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036318 B = 0.002366 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.783436 B =11831.345988 C =12119.771972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.048 3.952 4 C 0.190 3.810 5 H 0.102 0.898 6 O -0.371 6.371 7 C 0.030 3.970 8 C 0.161 3.839 9 N -0.360 5.360 10 O 0.083 5.917 11 C 0.201 3.799 12 C -0.031 4.031 13 C -0.116 4.116 14 C -0.108 4.108 15 C 0.020 3.980 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.479 5.479 25 H 0.089 0.911 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.253 -10.691 -5.423 26.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.030 4.030 4 C 0.130 3.870 5 H 0.120 0.880 6 O -0.288 6.288 7 C -0.066 4.066 8 C -0.112 4.112 9 N -0.066 5.066 10 O 0.021 5.979 11 C -0.019 4.019 12 C -0.070 4.070 13 C -0.155 4.155 14 C -0.146 4.146 15 C -0.017 4.017 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 N -0.213 5.213 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.121 0.879 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.298 -11.333 -6.185 26.636 hybrid contribution 0.431 0.773 0.796 1.190 sum -22.867 -10.560 -5.389 25.758 Atomic orbital electron populations 1.22783 0.80359 1.03020 1.00285 1.87811 1.20305 1.26929 1.95518 1.23000 0.92482 0.85676 1.01818 1.19739 0.90865 0.86283 0.90087 0.88022 1.87962 1.87881 1.20959 1.32035 1.22953 1.01465 0.79585 1.02604 1.25106 1.01547 0.98499 0.86071 1.74668 1.14202 0.95342 1.22362 1.85343 1.53718 1.32478 1.26346 1.29200 0.94725 0.93924 0.84021 1.20579 0.95758 0.94149 0.96497 1.21753 0.89758 1.01929 1.02066 1.21633 0.98940 0.96536 0.97477 1.19100 0.88275 0.97149 0.97218 1.21220 0.91369 1.17362 1.26049 0.92680 1.25039 0.97769 0.95894 0.95851 1.69954 1.06337 1.36316 1.40873 0.86655 0.78443 0.81772 0.81103 1.20253 1.21342 1.20241 1.71870 1.15857 1.06883 1.26671 0.89256 0.93829 0.93821 0.91785 0.91659 0.89388 0.93771 0.92025 0.87151 0.87879 0.91570 0.91435 0.92867 0.92902 0.96571 0.96547 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.65 8.83 -40.08 -0.35 -4.01 16 3 C 0.05 0.49 5.58 37.16 0.21 0.69 16 4 C 0.19 2.29 3.05 -27.89 -0.08 2.21 16 5 H 0.10 1.13 7.79 -51.93 -0.40 0.72 16 6 O -0.37 -4.78 10.33 -40.08 -0.41 -5.20 16 7 C 0.03 0.28 10.71 101.05 1.08 1.36 16 8 C 0.16 2.30 7.10 -156.37 -1.11 1.19 16 9 N -0.36 -5.45 12.16 30.90 0.38 -5.08 16 10 O 0.08 1.18 11.31 18.11 0.20 1.39 16 11 C 0.20 2.71 7.77 -13.05 -0.10 2.61 16 12 C -0.03 -0.36 5.84 -27.88 -0.16 -0.53 16 13 C -0.12 -1.79 5.20 -26.73 -0.14 -1.93 16 14 C -0.11 -2.02 5.15 -26.73 -0.14 -2.16 16 15 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 16 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 17 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 N -0.48 -6.98 11.55 -9.86 -0.11 -7.10 16 25 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.06 0.54 6.40 -51.93 -0.33 0.21 16 33 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -32.55 351.58 -5.79 -38.34 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -6.62 Total: -5.72 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 0.12 Total: -8.23 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 1.00 Total: -38.35 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.56 Total: -7.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.55 -5.79 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896654426.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.514 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds